Wall clock time and date at job start Tue Mar 31 2020 12:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48505 * 109.47217 * 274.73588 * 3 2 1 5 5 H 1.48494 * 109.47029 * 34.73843 * 3 2 1 6 6 H 1.48502 * 109.46893 * 154.74065 * 3 2 1 7 7 C 1.38812 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99751 * 196.57986 * 7 2 1 9 9 N 1.36935 * 120.00412 * 16.58008 * 7 2 1 10 10 C 1.47612 * 118.64169 * 27.05679 * 9 7 2 11 11 C 1.53946 * 112.13896 * 137.87013 * 10 9 7 12 12 C 1.50883 * 110.09517 * 319.43099 * 11 10 9 13 13 C 1.52569 * 109.35091 * 91.89531 * 12 11 10 14 14 C 1.47092 * 114.32673 * 274.97872 * 13 12 11 15 15 H 1.09002 * 109.33351 * 302.72099 * 14 13 12 16 16 N 1.46498 * 109.33162 * 183.05905 * 14 13 12 17 17 C 1.34779 * 119.99783 * 154.37766 * 16 14 13 18 18 O 1.21565 * 120.00238 * 0.27716 * 17 16 14 19 19 C 1.47724 * 119.99962 * 180.27941 * 17 16 14 20 20 C 1.40947 * 125.97578 * 179.97438 * 19 17 16 21 21 C 1.36174 * 107.94727 * 180.11562 * 20 19 17 22 22 N 1.35798 * 107.31725 * 359.61512 * 21 20 19 23 23 N 1.31838 * 125.97163 * 359.69563 * 19 17 16 24 24 C 1.47426 * 108.07141 * 180.76927 * 22 21 20 25 25 C 1.54646 * 102.35955 * 15.19146 * 24 22 21 26 26 O 1.36118 * 140.87629 * 179.13031 * 21 20 19 27 27 C 1.44657 * 118.81414 * 207.06707 * 9 7 2 28 28 H 0.96997 * 120.00374 * 0.02562 * 1 2 3 29 29 H 1.09004 * 108.94614 * 17.18207 * 10 9 7 30 30 H 1.09002 * 108.94348 * 258.55446 * 10 9 7 31 31 H 1.09004 * 109.36090 * 199.24380 * 11 10 9 32 32 H 1.08994 * 109.26400 * 79.56072 * 11 10 9 33 33 H 1.09000 * 109.48996 * 331.93119 * 12 11 10 34 34 H 1.08995 * 109.49178 * 211.85357 * 12 11 10 35 35 H 1.09004 * 108.51278 * 153.72879 * 13 12 11 36 36 H 1.08992 * 108.39312 * 36.14607 * 13 12 11 37 37 H 0.96995 * 120.00115 * 334.65717 * 16 14 13 38 38 H 1.07994 * 126.02258 * 0.10226 * 20 19 17 39 39 H 1.08994 * 110.82901 * 133.41324 * 24 22 21 40 40 H 1.08999 * 110.83023 * 256.97855 * 24 22 21 41 41 H 1.09003 * 110.84891 * 93.36594 * 25 24 22 42 42 H 1.08996 * 110.85672 * 216.99449 * 25 24 22 43 43 H 1.09003 * 109.61526 * 150.83018 * 27 9 7 44 44 H 1.08998 * 109.33051 * 30.88953 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3976 2.1043 -1.3953 5 1 1.5013 2.6216 0.7978 6 1 3.5942 1.4133 0.5975 7 6 2.0102 -1.2022 -0.0005 8 1 3.0565 -1.2217 0.2663 9 7 1.3683 -2.3633 -0.3394 10 6 0.2039 -2.2901 -1.2437 11 6 0.2165 -3.4119 -2.2979 12 6 1.6189 -3.6239 -2.8124 13 6 2.3063 -4.7003 -1.9777 14 6 2.9324 -4.2022 -0.7434 15 1 3.6563 -3.4265 -0.9936 16 7 3.6187 -5.3063 -0.0680 17 6 4.6579 -5.0529 0.7519 18 8 5.0227 -3.9078 0.9349 19 6 5.3539 -6.1667 1.4281 20 6 6.4496 -6.0469 2.3065 21 6 6.8005 -7.2984 2.7128 22 7 5.9480 -8.1709 2.1161 23 7 5.0553 -7.4463 1.3195 24 6 6.3018 -9.5316 2.5597 25 6 7.2087 -9.2561 3.7817 26 8 7.7110 -7.9374 3.4973 27 6 1.8561 -3.6131 0.2015 28 1 -0.4850 0.8400 -0.0004 29 1 0.2109 -1.3261 -1.7524 30 1 -0.7086 -2.3699 -0.6527 31 1 -0.4349 -3.1358 -3.1271 32 1 -0.1459 -4.3348 -1.8452 33 1 2.1790 -2.6919 -2.7365 34 1 1.5799 -3.9415 -3.8544 35 1 3.0747 -5.1740 -2.5887 36 1 1.5654 -5.4536 -1.7103 37 1 3.3277 -6.2200 -0.2141 38 1 6.9268 -5.1251 2.6046 39 1 5.4115 -10.0867 2.8551 40 1 6.8505 -10.0625 1.7818 41 1 6.6282 -9.2595 4.7043 42 1 8.0228 -9.9791 3.8317 43 1 1.0303 -4.3183 0.2953 44 1 2.2938 -3.4347 1.1837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034250514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:22 Heat of formation + Delta-G solvation = 34.771868 kcal Electronic energy + Delta-G solvation = -27218.382214 eV Core-core repulsion = 23366.692582 eV Total energy + Delta-G solvation = -3851.689632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.38043 -41.12980 -39.69776 -38.93138 -36.26276 -34.86025 -34.30505 -32.88089 -32.00697 -30.69952 -29.89119 -27.91404 -26.29952 -25.41818 -24.57012 -23.56825 -22.50581 -21.64076 -21.19183 -20.72708 -18.88164 -18.57610 -18.09488 -17.64429 -17.32727 -16.78243 -16.59115 -16.36911 -16.10856 -15.96833 -15.45277 -15.26727 -15.01539 -14.73569 -14.33225 -14.25921 -14.07308 -13.96716 -13.81207 -13.13373 -13.10462 -13.00265 -12.81506 -12.46013 -12.36020 -12.25489 -12.14335 -12.02592 -11.64890 -11.46595 -11.37504 -11.28458 -11.13272 -10.53650 -10.34357 -10.12642 -9.69914 -8.62862 -7.86297 -5.32218 0.11636 0.78027 0.93585 1.43957 1.44740 1.55836 1.67619 2.22075 2.24114 2.53166 3.01189 3.26230 3.37654 3.72367 3.80447 3.85665 3.92638 4.09956 4.11856 4.24338 4.28560 4.41545 4.45784 4.48613 4.52005 4.63586 4.71751 4.74793 4.77029 5.00729 5.05104 5.11886 5.16338 5.22803 5.26515 5.37148 5.40231 5.62707 5.65645 5.72965 5.76056 5.83948 6.22520 6.42297 6.55753 7.13141 7.19845 7.95019 8.31275 9.18255 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.003079 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.890063 B = 9092.947570 C =10145.896430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.958 3.042 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.050 0.950 9 N -0.596 5.596 10 C 0.184 3.816 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.110 4.110 14 C 0.133 3.867 15 H 0.054 0.946 16 N -0.691 5.691 17 C 0.595 3.405 18 O -0.559 6.559 19 C 0.046 3.954 20 C -0.244 4.244 21 C 0.242 3.758 22 N -0.408 5.408 23 N -0.225 5.225 24 C 0.087 3.913 25 C 0.038 3.962 26 O -0.290 6.290 27 C 0.158 3.842 28 H 0.250 0.750 29 H 0.039 0.961 30 H -0.004 1.004 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.415 0.585 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.172 0.828 43 H 0.050 0.950 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 -26.291 2.239 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.068 0.932 9 N -0.318 5.318 10 C 0.059 3.941 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.148 4.148 14 C 0.026 3.974 15 H 0.072 0.928 16 N -0.342 5.342 17 C 0.378 3.622 18 O -0.435 6.435 19 C -0.119 4.119 20 C -0.274 4.274 21 C 0.073 3.927 22 N -0.206 5.206 23 N -0.056 5.056 24 C -0.031 4.031 25 C -0.036 4.036 26 O -0.197 6.197 27 C 0.030 3.970 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.014 0.986 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.253 0.747 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.189 0.811 43 H 0.069 0.931 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.928 -26.289 1.905 28.533 hybrid contribution 0.641 1.563 0.680 1.821 sum 11.569 -24.726 2.585 27.421 Atomic orbital electron populations 1.70217 1.06209 1.25683 1.55545 1.25650 0.96017 1.00995 1.01105 0.85393 0.78070 0.80250 0.77653 1.20721 1.21646 1.20408 1.19377 0.92377 0.86552 1.40971 0.93220 1.43738 1.34090 1.01679 1.52257 1.20872 0.87012 0.96561 0.89630 1.21943 0.97452 0.99064 0.98478 1.20804 0.95570 0.98275 0.98845 1.20536 1.00621 0.99034 0.94570 1.20862 0.94608 0.87796 0.94106 0.92814 1.45816 1.31435 1.11395 1.45573 1.17099 0.80009 0.86152 0.78927 1.90857 1.66738 1.22410 1.63506 1.21671 0.97996 0.91752 1.00529 1.20130 1.03104 0.95502 1.08655 1.20610 0.87976 0.91395 0.92755 1.51112 1.25009 1.08815 1.35685 1.77512 1.11809 1.02053 1.14266 1.23860 1.02545 0.78467 0.98188 1.24981 1.00079 0.81060 0.97492 1.87164 1.38049 1.29337 1.65136 1.20999 0.94460 0.87760 0.93816 0.94082 0.94274 0.98626 0.90910 0.91602 0.94000 0.89684 0.90613 0.90159 0.74740 0.82575 0.84409 0.85336 0.87223 0.81100 0.93129 0.96615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 11.11 21.65 0.24 -56.65 16 2 C -0.04 -2.49 4.84 84.86 0.41 -2.08 16 3 Si 0.96 48.24 29.59 68.60 2.03 50.27 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.26 -15.60 9.44 84.03 0.79 -14.81 16 8 H 0.05 3.11 7.88 -2.91 -0.02 3.09 16 9 N -0.60 -31.26 2.27 -698.14 -1.58 -32.84 16 10 C 0.18 8.99 4.67 86.49 0.40 9.40 16 11 C -0.13 -4.61 5.70 30.23 0.17 -4.44 16 12 C -0.10 -3.14 5.51 29.76 0.16 -2.98 16 13 C -0.11 -3.24 4.55 28.61 0.13 -3.11 16 14 C 0.13 4.99 2.34 43.79 0.10 5.09 16 15 H 0.05 2.46 7.56 -2.39 -0.02 2.44 16 16 N -0.69 -22.29 5.05 -451.27 -2.28 -24.57 16 17 C 0.59 22.06 7.79 86.75 0.68 22.73 16 18 O -0.56 -26.05 16.55 -3.92 -0.06 -26.12 16 19 C 0.05 1.45 7.09 42.32 0.30 1.75 16 20 C -0.24 -7.22 10.60 22.45 0.24 -6.99 16 21 C 0.24 5.60 8.32 83.60 0.70 6.29 16 22 N -0.41 -8.19 5.01 -453.36 -2.27 -10.46 16 23 N -0.22 -5.94 12.39 -48.51 -0.60 -6.54 16 24 C 0.09 0.55 8.10 86.76 0.70 1.25 16 25 C 0.04 0.15 8.08 72.54 0.59 0.74 16 26 O -0.29 -4.81 11.19 -94.89 -1.06 -5.87 16 27 C 0.16 7.14 5.24 87.36 0.46 7.59 16 28 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.04 2.15 6.40 -2.39 -0.02 2.14 16 30 H 0.00 -0.23 8.03 -2.39 -0.02 -0.25 16 31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.07 2.08 7.31 -2.39 -0.02 2.06 16 33 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 2.02 7.34 -2.39 -0.02 2.00 16 37 H 0.42 10.62 8.27 -92.71 -0.77 9.85 16 38 H 0.16 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 42 H 0.17 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.05 2.07 8.05 -2.39 -0.02 2.05 16 44 H 0.02 0.79 7.98 -2.39 -0.02 0.77 16 Total: -1.00 -82.11 356.42 0.50 -81.62 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.26 Total: 10.71 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.83 Total: 20.45 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -6.50 Total: -131.06 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.13 Total: -31.99 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -82.11 0.50 -81.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034250514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.388 kcal (2) G-P(sol) polarization free energy of solvation -82.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds