Wall clock time and date at job start Tue Mar 31 2020 13:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32218 * 120.50735 * 2 1 4 4 C 1.31906 * 121.14069 * 180.23311 * 3 2 1 5 5 N 1.31752 * 122.19810 * 359.48015 * 4 3 2 6 6 C 1.32745 * 120.86660 * 0.25511 * 5 4 3 7 7 O 1.35287 * 120.61141 * 179.97438 * 6 5 4 8 8 C 1.39764 * 120.51164 * 179.72396 * 2 1 3 9 9 C 1.47535 * 120.97716 * 0.02562 * 8 2 1 10 10 O 1.21592 * 120.00031 * 270.01954 * 9 8 2 11 11 N 1.34771 * 120.00341 * 90.02475 * 9 8 2 12 12 C 1.46502 * 120.00248 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.35305 * 324.99792 * 12 11 9 14 14 C 1.54847 * 109.35984 * 205.27383 * 12 11 9 15 15 C 1.50119 * 110.81501 * 200.92548 * 14 12 11 16 16 C 1.52526 * 105.41577 * 97.67901 * 15 14 12 17 17 C 1.46234 * 114.28269 * 270.59631 * 16 15 14 18 18 N 1.50171 * 107.53332 * 58.40418 * 17 16 15 19 19 C 1.36930 * 120.53403 * 109.61704 * 18 17 16 20 20 H 1.08003 * 119.99826 * 156.34811 * 19 18 17 21 21 C 1.38814 * 120.00129 * 336.34713 * 19 18 17 22 22 N 1.31619 * 120.00189 * 340.77437 * 21 19 18 23 23 Si 1.86804 * 119.99991 * 160.78192 * 21 19 18 24 24 H 1.48501 * 109.47282 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47146 * 119.99788 * 23 21 19 26 26 H 1.48497 * 109.46790 * 240.00025 * 23 21 19 27 27 C 1.43132 * 118.89795 * 289.65844 * 18 17 16 28 28 H 1.08990 * 109.46984 * 270.27682 * 1 2 3 29 29 H 1.08997 * 109.46983 * 30.27672 * 1 2 3 30 30 H 1.09001 * 109.46983 * 150.27313 * 1 2 3 31 31 H 1.07999 * 118.89930 * 179.75696 * 4 3 2 32 32 H 0.96702 * 113.99956 * 90.00351 * 7 6 5 33 33 H 0.97001 * 120.00237 * 359.97438 * 11 9 8 34 34 H 1.08994 * 109.20566 * 321.26903 * 14 12 11 35 35 H 1.09005 * 109.20899 * 80.62537 * 14 12 11 36 36 H 1.08998 * 110.25236 * 216.65379 * 15 14 12 37 37 H 1.09006 * 110.25089 * 338.70962 * 15 14 12 38 38 H 1.09003 * 108.51734 * 31.83753 * 16 15 14 39 39 H 1.08996 * 108.52102 * 149.50227 * 16 15 14 40 40 H 1.09002 * 109.84670 * 177.91385 * 17 16 15 41 41 H 1.09007 * 109.84047 * 298.90032 * 17 16 15 42 42 H 0.96989 * 120.00380 * 180.02562 * 22 21 19 43 43 H 1.08998 * 108.12900 * 329.75973 * 27 18 17 44 44 H 1.09003 * 107.99452 * 213.28777 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 -0.0046 5 7 4.2115 0.0467 0.0007 6 6 3.6234 -1.1433 0.0060 7 8 4.3619 -2.2768 0.0109 8 6 2.2166 -1.2041 0.0058 9 6 1.5124 -2.5005 0.0115 10 8 1.2215 -3.0297 1.0668 11 7 1.1916 -3.0983 -1.1530 12 6 0.4928 -4.3859 -1.1474 13 1 0.8385 -4.9808 -0.3019 14 6 0.7969 -5.1408 -2.4647 15 6 -0.2496 -6.1821 -2.7366 16 6 -1.2213 -5.5340 -3.7175 17 6 -2.3201 -4.8066 -3.0835 18 7 -1.7154 -3.7467 -2.2082 19 6 -1.8163 -2.4238 -2.5468 20 1 -1.7397 -1.6636 -1.7834 21 6 -2.0170 -2.0596 -3.8712 22 7 -1.7391 -2.9097 -4.8368 23 14 -2.6815 -0.3630 -4.2830 24 1 -2.9118 0.3965 -3.0278 25 1 -1.6984 0.3620 -5.1275 26 1 -3.9629 -0.4991 -5.0209 27 6 -1.0312 -4.1425 -1.0149 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8924 -0.5096 31 1 4.0086 2.1049 -0.0084 32 1 4.5767 -2.6025 0.8958 33 1 1.4234 -2.6760 -1.9950 34 1 0.8170 -4.4286 -3.2896 35 1 1.7706 -5.6242 -2.3845 36 1 0.2049 -7.0660 -3.1842 37 1 -0.7660 -6.4479 -1.8141 38 1 -0.6653 -4.8405 -4.3484 39 1 -1.6448 -6.3132 -4.3512 40 1 -2.9463 -4.3437 -3.8463 41 1 -2.9162 -5.4901 -2.4789 42 1 -1.8790 -2.6552 -5.7622 43 1 -1.4913 -5.0603 -0.6487 44 1 -1.1875 -3.3676 -0.2644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034360804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:47 Heat of formation + Delta-G solvation = 0.642214 kcal Electronic energy + Delta-G solvation = -28732.544344 eV Core-core repulsion = 24879.374739 eV Total energy + Delta-G solvation = -3853.169604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40252 -39.29395 -37.88561 -37.62030 -34.26971 -34.21911 -33.17170 -32.03768 -31.04309 -29.90802 -28.54258 -26.26977 -25.29262 -23.92487 -23.00068 -22.86355 -20.78398 -19.73239 -19.22800 -19.00186 -18.08002 -17.42751 -16.72328 -16.38204 -15.79527 -15.15388 -14.96493 -14.71551 -14.37231 -14.15767 -13.74247 -13.64891 -13.37165 -13.14515 -12.81053 -12.62346 -12.41416 -12.27332 -12.05245 -11.80671 -11.60038 -11.34440 -11.30372 -10.84772 -10.83789 -10.52965 -10.41454 -10.17555 -10.00644 -9.78358 -9.68813 -9.49198 -9.44489 -9.40389 -9.27797 -8.70845 -8.40159 -6.75447 -5.87200 -3.26500 0.53802 0.81924 2.73523 3.14460 3.30571 3.39535 3.40689 3.41404 3.66043 3.92596 4.17865 4.42890 4.77363 4.92508 5.13264 5.24474 5.31961 5.34089 5.44554 5.61406 5.65980 5.78431 5.90770 5.93960 6.07734 6.14298 6.20561 6.29631 6.40096 6.47317 6.58125 6.73137 6.80000 6.85463 6.92648 6.97973 7.12288 7.15976 7.22955 7.57175 7.67653 7.88618 7.91234 7.94205 8.35134 8.50539 9.11407 9.79131 10.32801 11.19206 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.005649 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.983343 B = 4955.048573 C = 6398.648606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.234 3.766 3 N -0.526 5.526 4 C 0.329 3.671 5 N -0.546 5.546 6 C 0.393 3.607 7 O -0.469 6.469 8 C -0.243 4.243 9 C 0.575 3.425 10 O -0.545 6.545 11 N -0.683 5.683 12 C 0.115 3.885 13 H 0.074 0.926 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.131 4.131 17 C 0.165 3.835 18 N -0.582 5.582 19 C -0.244 4.244 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.151 3.849 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.204 0.796 32 H 0.411 0.589 33 H 0.403 0.597 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.024 0.976 40 H 0.089 0.911 41 H 0.005 0.995 42 H 0.252 0.748 43 H 0.038 0.962 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 0.844 7.180 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 N -0.243 5.243 4 C 0.042 3.958 5 N -0.272 5.272 6 C 0.205 3.795 7 O -0.277 6.277 8 C -0.252 4.252 9 C 0.357 3.643 10 O -0.424 6.424 11 N -0.330 5.330 12 C 0.008 3.992 13 H 0.092 0.908 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.169 4.169 17 C 0.041 3.959 18 N -0.302 5.302 19 C -0.373 4.373 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.542 5.542 23 Si 0.722 3.278 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.217 1.217 27 C 0.021 3.979 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.220 0.780 32 H 0.272 0.728 33 H 0.237 0.763 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.043 0.957 40 H 0.107 0.893 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.822 1.296 7.136 10.667 hybrid contribution -0.203 0.301 -0.399 0.539 sum 7.618 1.597 6.738 10.295 Atomic orbital electron populations 1.21072 0.86416 1.06051 1.04288 1.21924 0.98008 0.85843 0.85352 1.68312 1.10043 1.29661 1.16249 1.24913 0.86412 0.95994 0.88502 1.68010 1.42709 0.98693 1.17744 1.19366 0.85578 0.85828 0.88732 1.84636 1.72586 1.36133 1.34384 1.21906 0.94889 0.97477 1.10916 1.17417 0.78819 0.83252 0.84764 1.90780 1.55593 1.64983 1.31017 1.46015 1.56727 1.22643 1.07659 1.22937 0.96239 0.82414 0.97614 0.90847 1.21667 0.97363 0.98063 0.97705 1.20971 0.97493 0.96489 1.00009 1.21010 0.99140 0.98640 0.98152 1.20178 0.93960 0.88467 0.93264 1.44172 1.58631 1.03113 1.24323 1.19167 1.44003 0.82895 0.91256 0.91641 1.24873 1.01411 0.97227 0.95878 1.69958 1.50301 1.35153 0.98769 0.86394 0.78751 0.84517 0.78167 1.20242 1.21963 1.21664 1.20746 0.88826 0.97924 0.90444 0.89028 0.89070 0.88187 0.77986 0.72818 0.76275 0.90166 0.94176 0.93226 0.92396 0.88117 0.95692 0.89309 0.97644 0.93780 0.94342 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.85 36.01 0.35 -1.45 16 2 C 0.23 3.59 6.86 -81.85 -0.56 3.03 16 3 N -0.53 -7.49 10.36 -10.52 -0.11 -7.60 16 4 C 0.33 4.07 12.27 -92.09 -1.13 2.94 16 5 N -0.55 -7.53 10.45 -14.32 -0.15 -7.68 16 6 C 0.39 5.70 7.85 -16.19 -0.13 5.57 16 7 O -0.47 -6.02 13.10 -17.55 -0.23 -6.25 16 8 C -0.24 -3.81 5.67 -104.57 -0.59 -4.41 16 9 C 0.57 9.93 5.36 -12.47 -0.07 9.86 16 10 O -0.55 -10.67 16.77 5.28 0.09 -10.58 16 11 N -0.68 -11.87 5.08 -52.93 -0.27 -12.14 16 12 C 0.12 2.05 2.92 -65.95 -0.19 1.86 16 13 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 14 C -0.11 -1.90 5.23 -27.19 -0.14 -2.04 16 15 C -0.11 -1.90 5.76 -28.41 -0.16 -2.06 16 16 C -0.13 -2.59 5.02 -30.19 -0.15 -2.74 16 17 C 0.16 3.56 5.24 -5.20 -0.03 3.54 16 18 N -0.58 -12.88 2.60 -175.30 -0.46 -13.33 16 19 C -0.24 -5.87 9.62 -15.06 -0.14 -6.01 16 20 H 0.07 1.58 6.48 -52.48 -0.34 1.24 16 21 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -22.89 9.42 55.49 0.52 -22.37 16 23 Si 0.89 20.25 29.60 -169.99 -5.03 15.22 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 C 0.15 2.99 4.77 -4.82 -0.02 2.97 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.71 5.77 -51.93 -0.30 1.41 16 31 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.41 3.39 9.06 45.56 0.41 3.80 16 33 H 0.40 7.16 8.43 -40.82 -0.34 6.81 16 34 H 0.08 1.60 6.59 -51.93 -0.34 1.26 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.97 6.28 -51.93 -0.33 0.64 16 38 H 0.10 2.30 5.28 -51.93 -0.27 2.02 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 2.17 6.06 -51.93 -0.31 1.86 16 41 H 0.01 0.11 8.12 -51.93 -0.42 -0.31 16 42 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 43 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16 44 H 0.04 0.78 7.83 -51.93 -0.41 0.38 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -28.54 351.45 -8.47 -37.01 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.08 Total: 11.36 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -3.05 Total: 11.07 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.46 Total: -63.13 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.14 Total: -16.83 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.54 -8.47 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034360804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.653 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds