Wall clock time and date at job start Tue Mar 31 2020 13:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32218 * 120.50735 * 2 1 4 4 C 1.31906 * 121.14069 * 180.23311 * 3 2 1 5 5 N 1.31752 * 122.19810 * 359.48015 * 4 3 2 6 6 C 1.32745 * 120.86660 * 0.25511 * 5 4 3 7 7 O 1.35287 * 120.61141 * 179.97438 * 6 5 4 8 8 C 1.39764 * 120.51164 * 179.72396 * 2 1 3 9 9 C 1.47535 * 120.97716 * 0.02562 * 8 2 1 10 10 O 1.21592 * 120.00031 * 270.01954 * 9 8 2 11 11 N 1.34771 * 120.00341 * 90.02475 * 9 8 2 12 12 C 1.46502 * 120.00248 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.35305 * 324.99792 * 12 11 9 14 14 C 1.54847 * 109.35984 * 205.27383 * 12 11 9 15 15 C 1.50119 * 110.81501 * 200.92548 * 14 12 11 16 16 C 1.52526 * 105.41577 * 97.67901 * 15 14 12 17 17 C 1.46234 * 114.28269 * 270.59631 * 16 15 14 18 18 N 1.50171 * 107.53332 * 58.40418 * 17 16 15 19 19 C 1.36930 * 120.53403 * 109.61704 * 18 17 16 20 20 H 1.08003 * 119.99826 * 156.34811 * 19 18 17 21 21 C 1.38814 * 120.00129 * 336.34713 * 19 18 17 22 22 N 1.31619 * 120.00189 * 340.77437 * 21 19 18 23 23 Si 1.86804 * 119.99991 * 160.78192 * 21 19 18 24 24 H 1.48501 * 109.47282 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47146 * 119.99788 * 23 21 19 26 26 H 1.48497 * 109.46790 * 240.00025 * 23 21 19 27 27 C 1.43132 * 118.89795 * 289.65844 * 18 17 16 28 28 H 1.08990 * 109.46984 * 270.27682 * 1 2 3 29 29 H 1.08997 * 109.46983 * 30.27672 * 1 2 3 30 30 H 1.09001 * 109.46983 * 150.27313 * 1 2 3 31 31 H 1.07999 * 118.89930 * 179.75696 * 4 3 2 32 32 H 0.96702 * 113.99956 * 90.00351 * 7 6 5 33 33 H 0.97001 * 120.00237 * 359.97438 * 11 9 8 34 34 H 1.08994 * 109.20566 * 321.26903 * 14 12 11 35 35 H 1.09005 * 109.20899 * 80.62537 * 14 12 11 36 36 H 1.08998 * 110.25236 * 216.65379 * 15 14 12 37 37 H 1.09006 * 110.25089 * 338.70962 * 15 14 12 38 38 H 1.09003 * 108.51734 * 31.83753 * 16 15 14 39 39 H 1.08996 * 108.52102 * 149.50227 * 16 15 14 40 40 H 1.09002 * 109.84670 * 177.91385 * 17 16 15 41 41 H 1.09007 * 109.84047 * 298.90032 * 17 16 15 42 42 H 0.96989 * 120.00380 * 180.02562 * 22 21 19 43 43 H 1.08998 * 108.12900 * 329.75973 * 27 18 17 44 44 H 1.09003 * 107.99452 * 213.28777 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 -0.0046 5 7 4.2115 0.0467 0.0007 6 6 3.6234 -1.1433 0.0060 7 8 4.3619 -2.2768 0.0109 8 6 2.2166 -1.2041 0.0058 9 6 1.5124 -2.5005 0.0115 10 8 1.2215 -3.0297 1.0668 11 7 1.1916 -3.0983 -1.1530 12 6 0.4928 -4.3859 -1.1474 13 1 0.8385 -4.9808 -0.3019 14 6 0.7969 -5.1408 -2.4647 15 6 -0.2496 -6.1821 -2.7366 16 6 -1.2213 -5.5340 -3.7175 17 6 -2.3201 -4.8066 -3.0835 18 7 -1.7154 -3.7467 -2.2082 19 6 -1.8163 -2.4238 -2.5468 20 1 -1.7397 -1.6636 -1.7834 21 6 -2.0170 -2.0596 -3.8712 22 7 -1.7391 -2.9097 -4.8368 23 14 -2.6815 -0.3630 -4.2830 24 1 -2.9118 0.3965 -3.0278 25 1 -1.6984 0.3620 -5.1275 26 1 -3.9629 -0.4991 -5.0209 27 6 -1.0312 -4.1425 -1.0149 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8924 -0.5096 31 1 4.0086 2.1049 -0.0084 32 1 4.5767 -2.6025 0.8958 33 1 1.4234 -2.6760 -1.9950 34 1 0.8170 -4.4286 -3.2896 35 1 1.7706 -5.6242 -2.3845 36 1 0.2049 -7.0660 -3.1842 37 1 -0.7660 -6.4479 -1.8141 38 1 -0.6653 -4.8405 -4.3484 39 1 -1.6448 -6.3132 -4.3512 40 1 -2.9463 -4.3437 -3.8463 41 1 -2.9162 -5.4901 -2.4789 42 1 -1.8790 -2.6552 -5.7622 43 1 -1.4913 -5.0603 -0.6487 44 1 -1.1875 -3.3676 -0.2644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034360804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:47 Heat of formation + Delta-G solvation = -20.144942 kcal Electronic energy + Delta-G solvation = -28733.445742 eV Core-core repulsion = 24879.374739 eV Total energy + Delta-G solvation = -3854.071003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.51958 -40.69969 -39.23094 -38.84876 -35.84608 -35.34804 -34.74826 -33.22745 -32.79534 -31.40356 -29.73465 -27.95887 -26.56418 -25.35368 -24.68098 -23.97243 -22.22510 -21.23743 -20.77556 -20.03777 -19.19108 -18.77447 -18.50786 -17.49717 -17.16550 -16.78560 -16.29155 -16.07674 -15.83461 -15.46718 -15.27224 -15.19328 -14.75496 -14.41251 -14.03097 -13.93900 -13.87311 -13.71121 -13.41074 -13.23801 -13.19260 -13.10063 -12.66580 -12.49364 -12.30954 -12.26779 -11.86782 -11.75837 -11.48088 -11.29161 -11.13255 -10.97477 -10.91026 -10.64408 -10.54072 -10.43299 -10.01125 -8.55342 -7.76760 -5.16062 -0.54080 -0.29305 1.39281 1.46314 1.53347 1.58102 2.12091 2.15330 2.50881 2.56508 2.87776 3.12118 3.36934 3.54392 3.64844 3.78618 3.97283 4.08080 4.18744 4.22403 4.43526 4.50547 4.55998 4.60321 4.62750 4.70422 4.87503 4.88871 4.94296 5.07490 5.14692 5.26138 5.33174 5.35226 5.46858 5.62514 5.64334 5.67411 5.77029 5.84960 6.26612 6.29630 6.45098 6.53424 6.82852 7.11328 7.24297 7.96671 8.47718 9.27006 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.005649 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.983343 B = 4955.048573 C = 6398.648606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.228 3.772 3 N -0.536 5.536 4 C 0.337 3.663 5 N -0.552 5.552 6 C 0.399 3.601 7 O -0.475 6.475 8 C -0.264 4.264 9 C 0.583 3.417 10 O -0.570 6.570 11 N -0.683 5.683 12 C 0.123 3.877 13 H 0.081 0.919 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.123 4.123 17 C 0.167 3.833 18 N -0.591 5.591 19 C -0.238 4.238 20 H 0.063 0.937 21 C -0.035 4.035 22 N -0.912 5.912 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.300 1.300 26 H -0.299 1.299 27 C 0.153 3.847 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.430 0.570 33 H 0.400 0.600 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.244 0.756 43 H 0.049 0.951 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 0.881 8.116 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 N -0.252 5.252 4 C 0.050 3.950 5 N -0.278 5.278 6 C 0.211 3.789 7 O -0.286 6.286 8 C -0.273 4.273 9 C 0.367 3.633 10 O -0.450 6.450 11 N -0.329 5.329 12 C 0.016 3.984 13 H 0.099 0.901 14 C -0.138 4.138 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.044 3.956 18 N -0.312 5.312 19 C -0.369 4.369 20 H 0.080 0.920 21 C -0.231 4.231 22 N -0.558 5.558 23 Si 0.768 3.232 24 H -0.194 1.194 25 H -0.228 1.228 26 H -0.227 1.227 27 C 0.024 3.976 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.262 0.738 32 H 0.294 0.706 33 H 0.235 0.765 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.168 1.327 8.106 12.309 hybrid contribution -0.588 0.298 -0.633 0.914 sum 8.580 1.625 7.473 11.494 Atomic orbital electron populations 1.20988 0.86687 1.04960 1.04729 1.21963 0.98123 0.86247 0.85386 1.68383 1.10969 1.28912 1.16946 1.25821 0.85913 0.97158 0.86066 1.68162 1.42614 0.98706 1.18278 1.19439 0.85236 0.86548 0.87681 1.84585 1.72168 1.35717 1.36134 1.21771 0.95541 0.96616 1.13364 1.17565 0.78123 0.83492 0.84098 1.90755 1.56656 1.65885 1.31736 1.46010 1.56629 1.22592 1.07707 1.22764 0.94596 0.82826 0.98257 0.90097 1.21554 0.98705 0.97528 0.96056 1.20931 0.96616 0.96929 0.99606 1.20834 0.98743 0.98127 0.98436 1.20101 0.94388 0.88423 0.92710 1.44240 1.59395 1.02681 1.24851 1.19283 1.42726 0.83844 0.91007 0.91973 1.25315 1.02451 0.99239 0.96086 1.70094 1.51388 1.35948 0.98367 0.85672 0.77461 0.82331 0.77778 1.19419 1.22804 1.22658 1.20746 0.90256 0.97745 0.88898 0.87915 0.88520 0.90689 0.73767 0.70566 0.76544 0.92984 0.91982 0.90741 0.91618 0.91130 0.94886 0.92487 0.96215 0.94630 0.93232 0.96151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 9.85 71.24 0.70 -2.75 16 2 C 0.23 6.81 6.86 42.87 0.29 7.11 16 3 N -0.54 -14.28 10.36 -187.21 -1.94 -16.22 16 4 C 0.34 7.42 12.27 180.86 2.22 9.64 16 5 N -0.55 -13.98 10.45 -312.04 -3.26 -17.24 16 6 C 0.40 10.97 7.85 85.18 0.67 11.64 16 7 O -0.47 -11.38 13.10 -85.72 -1.12 -12.50 16 8 C -0.26 -8.08 5.67 -19.83 -0.11 -8.19 16 9 C 0.58 19.90 5.36 86.70 0.46 20.37 16 10 O -0.57 -22.03 16.77 -4.01 -0.07 -22.10 16 11 N -0.68 -23.52 5.08 -439.64 -2.23 -25.75 16 12 C 0.12 4.24 2.92 46.27 0.14 4.37 16 13 H 0.08 2.72 7.57 -2.39 -0.02 2.71 16 14 C -0.10 -3.32 5.23 30.30 0.16 -3.16 16 15 C -0.10 -3.27 5.76 29.51 0.17 -3.10 16 16 C -0.12 -4.78 5.02 28.35 0.14 -4.64 16 17 C 0.17 7.22 5.24 83.58 0.44 7.66 16 18 N -0.59 -26.20 2.60 -708.53 -1.84 -28.04 16 19 C -0.24 -11.61 9.62 84.04 0.81 -10.80 16 20 H 0.06 3.04 6.48 -2.91 -0.02 3.03 16 21 C -0.03 -1.75 4.92 84.86 0.42 -1.33 16 22 N -0.91 -47.61 9.42 21.65 0.20 -47.40 16 23 Si 0.94 42.21 29.60 68.60 2.03 44.24 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 27 C 0.15 5.98 4.77 87.65 0.42 6.40 16 28 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 2.61 5.77 -2.39 -0.01 2.59 16 31 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.43 6.29 9.06 -74.06 -0.67 5.62 16 33 H 0.40 14.29 8.43 -92.71 -0.78 13.51 16 34 H 0.05 2.06 6.59 -2.39 -0.02 2.04 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.01 6.28 -2.38 -0.01 1.99 16 38 H 0.07 3.24 5.28 -2.39 -0.01 3.23 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 2.84 6.06 -2.39 -0.01 2.82 16 41 H 0.02 0.79 8.12 -2.38 -0.02 0.77 16 42 H 0.24 12.76 8.31 -92.72 -0.77 11.99 16 43 H 0.05 1.81 6.88 -2.39 -0.02 1.79 16 44 H 0.02 0.86 7.83 -2.39 -0.02 0.84 16 Total: -1.00 -61.06 351.45 -1.69 -62.76 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.39 Total: 29.05 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: 6.92 Total: 33.21 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -9.07 Total: -134.66 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.19 Total: -34.60 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -61.06 -1.69 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034360804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds