Wall clock time and date at job start Tue Mar 31 2020 13:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32219 * 120.50955 * 2 1 4 4 C 1.31915 * 121.14304 * 180.26429 * 3 2 1 5 5 N 1.31751 * 122.19540 * 359.72950 * 4 3 2 6 6 C 1.32753 * 120.87099 * 359.97438 * 5 4 3 7 7 O 1.35273 * 120.61334 * 180.02562 * 6 5 4 8 8 C 1.39772 * 120.51186 * 179.73384 * 2 1 3 9 9 C 1.47532 * 120.97645 * 0.02978 * 8 2 1 10 10 O 1.21588 * 119.99904 * 269.71132 * 9 8 2 11 11 N 1.34779 * 120.00367 * 89.71797 * 9 8 2 12 12 C 1.46499 * 120.00372 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.32364 * 34.64532 * 12 11 9 14 14 C 1.47085 * 109.33094 * 154.13007 * 12 11 9 15 15 C 1.52569 * 114.32813 * 183.06154 * 14 12 11 16 16 C 1.50883 * 109.35681 * 274.98730 * 15 14 12 17 17 C 1.54298 * 110.23359 * 91.79664 * 16 15 14 18 18 N 1.47601 * 111.94655 * 319.69882 * 17 16 15 19 19 C 1.36933 * 118.64783 * 137.77540 * 18 17 16 20 20 H 1.08000 * 120.00753 * 207.79200 * 19 18 17 21 21 C 1.38816 * 119.99377 * 27.80312 * 19 18 17 22 22 N 1.31618 * 119.99639 * 200.37697 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 20.37241 * 21 19 18 24 24 H 1.48511 * 109.47132 * 270.00404 * 23 21 19 25 25 H 1.48497 * 109.47412 * 150.00344 * 23 21 19 26 26 H 1.48500 * 109.47033 * 29.99959 * 23 21 19 27 27 C 1.44584 * 122.71009 * 317.50378 * 18 17 16 28 28 H 1.08999 * 109.47257 * 270.26163 * 1 2 3 29 29 H 1.08997 * 109.46866 * 30.26328 * 1 2 3 30 30 H 1.08997 * 109.46922 * 150.26091 * 1 2 3 31 31 H 1.07997 * 118.90309 * 179.70749 * 4 3 2 32 32 H 0.96706 * 113.99986 * 269.97776 * 7 6 5 33 33 H 0.97006 * 119.99469 * 359.97438 * 11 9 8 34 34 H 1.09007 * 108.51128 * 304.31000 * 14 12 11 35 35 H 1.09002 * 108.51742 * 61.95915 * 14 12 11 36 36 H 1.09002 * 109.48981 * 34.95159 * 15 14 12 37 37 H 1.09000 * 109.49253 * 154.99297 * 15 14 12 38 38 H 1.08997 * 109.36572 * 212.07297 * 16 15 14 39 39 H 1.08998 * 109.36755 * 331.69081 * 16 15 14 40 40 H 1.09001 * 109.13418 * 199.01430 * 17 16 15 41 41 H 1.09003 * 108.96162 * 80.26989 * 17 16 15 42 42 H 0.97006 * 119.99898 * 354.89337 * 22 21 19 43 43 H 1.09002 * 109.44899 * 211.02144 * 27 18 17 44 44 H 1.08996 * 109.44971 * 330.96917 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2116 0.0466 -0.0054 6 6 3.6234 -1.1435 0.0003 7 8 4.3619 -2.2769 0.0006 8 6 2.2166 -1.2042 0.0056 9 6 1.5124 -2.5005 0.0110 10 8 1.2264 -3.0326 1.0661 11 7 1.1862 -3.0951 -1.1538 12 6 0.4864 -4.3822 -1.1484 13 1 -0.1965 -4.4179 -0.2996 14 6 -0.2828 -4.5233 -2.3941 15 6 -1.1182 -5.7974 -2.4761 16 6 -0.2589 -6.9266 -2.9889 17 6 0.3832 -7.6866 -1.8095 18 7 0.8370 -6.7707 -0.7447 19 6 0.6055 -7.1151 0.5602 20 1 0.4965 -6.3461 1.3106 21 6 0.5112 -8.4529 0.9186 22 7 -0.0913 -8.7933 2.0382 23 14 1.2392 -9.7699 -0.1880 24 1 0.2147 -10.2165 -1.1660 25 1 1.6727 -10.9258 0.6373 26 1 2.4087 -9.2145 -0.9152 27 6 1.5210 -5.5275 -1.0225 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 4.0088 2.1049 -0.0098 32 1 4.5729 -2.6091 -0.8828 33 1 1.4141 -2.6704 -1.9956 34 1 -0.9493 -3.6659 -2.4884 35 1 0.4126 -4.5135 -3.2334 36 1 -1.4960 -6.0489 -1.4851 37 1 -1.9559 -5.6399 -3.1554 38 1 -0.8740 -7.6139 -3.5697 39 1 0.5276 -6.5219 -3.6259 40 1 1.2379 -8.2562 -2.1744 41 1 -0.3492 -8.3782 -1.3930 42 1 -0.4038 -8.1073 2.6488 43 1 2.2125 -5.3043 -0.2100 44 1 2.0757 -5.6193 -1.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034360805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:51 Heat of formation + Delta-G solvation = -1.814103 kcal Electronic energy + Delta-G solvation = -28015.616432 eV Core-core repulsion = 24162.340314 eV Total energy + Delta-G solvation = -3853.276118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65718 -39.64824 -38.06182 -37.85068 -34.80907 -34.49989 -33.40409 -32.31232 -31.23331 -30.43713 -28.92523 -26.16685 -25.54909 -24.59476 -23.14130 -22.57718 -20.85997 -20.31087 -19.70509 -19.19898 -18.34149 -17.72053 -17.17630 -16.68630 -16.20244 -15.46056 -15.32380 -14.80062 -14.49258 -14.44442 -13.98692 -13.90918 -13.62379 -13.32448 -13.17135 -13.05452 -12.91728 -12.73440 -12.35976 -12.26478 -11.87317 -11.54689 -11.50942 -11.41083 -10.73942 -10.67685 -10.54267 -10.34737 -10.15682 -9.94341 -9.80810 -9.75249 -9.59824 -9.53237 -9.09742 -9.03947 -8.38788 -6.99372 -6.19184 -3.28808 0.29257 0.56158 2.50649 2.94439 3.11511 3.25405 3.40890 3.55290 3.62268 3.70531 3.91569 4.48653 4.61145 4.63934 4.83516 4.98126 4.98791 5.08615 5.19751 5.22087 5.33231 5.44023 5.50231 5.56441 5.66164 5.72432 5.87270 5.91152 6.03438 6.12439 6.26800 6.35976 6.42548 6.45820 6.49036 6.54403 6.60762 6.73926 6.86645 6.92939 7.03326 7.52621 7.64174 8.18465 8.25046 8.53602 9.13744 9.68944 10.19373 11.19884 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003768 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.786909 B = 7428.886120 C = 7909.626494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.225 3.775 3 N -0.527 5.527 4 C 0.332 3.668 5 N -0.542 5.542 6 C 0.398 3.602 7 O -0.463 6.463 8 C -0.245 4.245 9 C 0.570 3.430 10 O -0.502 6.502 11 N -0.715 5.715 12 C 0.115 3.885 13 H 0.092 0.908 14 C -0.113 4.113 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.121 3.879 18 N -0.594 5.594 19 C -0.350 4.350 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 1.069 2.931 24 H -0.295 1.295 25 H -0.302 1.302 26 H -0.288 1.288 27 C 0.157 3.843 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.206 0.794 32 H 0.412 0.588 33 H 0.391 0.609 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.264 0.736 43 H 0.056 0.944 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 17.965 -13.129 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 N -0.243 5.243 4 C 0.044 3.956 5 N -0.267 5.267 6 C 0.211 3.789 7 O -0.271 6.271 8 C -0.255 4.255 9 C 0.352 3.648 10 O -0.375 6.375 11 N -0.367 5.367 12 C 0.009 3.991 13 H 0.110 0.890 14 C -0.151 4.151 15 C -0.141 4.141 16 C -0.172 4.172 17 C -0.004 4.004 18 N -0.316 5.316 19 C -0.479 4.479 20 H 0.088 0.912 21 C -0.216 4.216 22 N -0.561 5.561 23 Si 0.902 3.098 24 H -0.223 1.223 25 H -0.230 1.230 26 H -0.215 1.215 27 C 0.028 3.972 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.222 0.778 32 H 0.272 0.728 33 H 0.224 0.776 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.373 16.715 -11.932 20.812 hybrid contribution -0.149 1.098 -0.641 1.280 sum 3.224 17.813 -12.573 22.040 Atomic orbital electron populations 1.20918 0.86918 1.04490 1.04788 1.21817 0.97751 0.86000 0.86513 1.68294 1.10209 1.29385 1.16450 1.24957 0.86262 0.96123 0.88221 1.68066 1.42630 0.98691 1.17362 1.19420 0.85617 0.85968 0.87934 1.84739 1.72427 1.35712 1.34181 1.21890 0.95171 0.97151 1.11249 1.17507 0.79276 0.83196 0.84858 1.90933 1.52091 1.63786 1.30719 1.46176 1.60039 1.23183 1.07253 1.21272 0.96463 0.82046 0.99335 0.89031 1.20585 0.98563 0.98703 0.97211 1.20835 0.96968 0.93639 1.02669 1.21923 0.98758 0.98076 0.98424 1.21823 0.96827 0.92924 0.88857 1.43853 1.65098 1.19587 1.03018 1.20329 1.49509 0.93604 0.84456 0.91230 1.26170 0.97906 0.97360 1.00158 1.70873 1.36261 1.36195 1.12765 0.83774 0.76462 0.75425 0.74176 1.22324 1.22987 1.21498 1.20961 0.92161 0.85632 0.98473 0.88614 0.89045 0.89799 0.77810 0.72760 0.77559 0.93064 0.92714 0.90096 0.92773 0.92250 0.92924 0.95947 0.90995 0.92606 0.92608 0.94938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.85 36.00 0.35 -0.71 16 2 C 0.23 2.57 6.86 -81.85 -0.56 2.01 16 3 N -0.53 -5.68 10.36 -10.52 -0.11 -5.79 16 4 C 0.33 3.22 12.27 -92.09 -1.13 2.09 16 5 N -0.54 -6.41 10.45 -14.32 -0.15 -6.56 16 6 C 0.40 5.10 7.85 -16.18 -0.13 4.97 16 7 O -0.46 -5.77 13.10 -17.51 -0.23 -6.00 16 8 C -0.25 -3.20 5.67 -104.56 -0.59 -3.79 16 9 C 0.57 8.84 5.48 -12.47 -0.07 8.77 16 10 O -0.50 -10.68 16.76 5.29 0.09 -10.59 16 11 N -0.72 -9.30 5.05 -56.67 -0.29 -9.58 16 12 C 0.11 1.88 2.34 -69.79 -0.16 1.72 16 13 H 0.09 1.89 7.56 -51.93 -0.39 1.50 16 14 C -0.11 -1.52 4.55 -29.79 -0.14 -1.65 16 15 C -0.10 -1.56 5.51 -28.01 -0.15 -1.72 16 16 C -0.13 -2.10 5.71 -27.11 -0.15 -2.26 16 17 C 0.12 2.51 4.02 -2.76 -0.01 2.50 16 18 N -0.59 -13.79 2.03 -171.87 -0.35 -14.14 16 19 C -0.35 -9.89 9.72 -15.06 -0.15 -10.03 16 20 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 21 C -0.01 -0.42 5.14 -17.43 -0.09 -0.51 16 22 N -0.92 -29.02 13.70 55.49 0.76 -28.26 16 23 Si 1.07 26.57 24.39 -169.99 -4.15 22.43 16 24 H -0.30 -6.81 6.62 56.52 0.37 -6.44 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 26 H -0.29 -6.84 6.62 56.52 0.37 -6.47 16 27 C 0.16 3.08 5.24 -4.08 -0.02 3.06 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.79 7.18 -51.93 -0.37 0.42 16 31 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.41 2.91 9.06 45.56 0.41 3.33 16 33 H 0.39 3.67 8.57 -40.82 -0.35 3.32 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 36 H 0.08 1.52 7.49 -51.93 -0.39 1.13 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 40 H 0.02 0.47 5.95 -51.93 -0.31 0.16 16 41 H 0.07 1.66 5.28 -51.93 -0.27 1.38 16 42 H 0.26 8.34 8.73 -40.82 -0.36 7.99 16 43 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 44 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -36.45 353.75 -7.53 -43.97 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.43 Total: 4.73 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.00 Total: 4.46 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.13 Total: -64.33 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.14 Total: -16.59 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.15 Total: 22.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.45 -7.53 -43.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034360805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.160 kcal (2) G-P(sol) polarization free energy of solvation -36.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds