Wall clock time and date at job start Tue Mar 31 2020 13:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32219 * 120.50955 * 2 1 4 4 C 1.31915 * 121.14304 * 180.26429 * 3 2 1 5 5 N 1.31751 * 122.19540 * 359.72950 * 4 3 2 6 6 C 1.32753 * 120.87099 * 359.97438 * 5 4 3 7 7 O 1.35273 * 120.61334 * 180.02562 * 6 5 4 8 8 C 1.39772 * 120.51186 * 179.73384 * 2 1 3 9 9 C 1.47532 * 120.97645 * 0.02978 * 8 2 1 10 10 O 1.21588 * 119.99904 * 269.71132 * 9 8 2 11 11 N 1.34779 * 120.00367 * 89.71797 * 9 8 2 12 12 C 1.46499 * 120.00372 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.32364 * 34.64532 * 12 11 9 14 14 C 1.47085 * 109.33094 * 154.13007 * 12 11 9 15 15 C 1.52569 * 114.32813 * 183.06154 * 14 12 11 16 16 C 1.50883 * 109.35681 * 274.98730 * 15 14 12 17 17 C 1.54298 * 110.23359 * 91.79664 * 16 15 14 18 18 N 1.47601 * 111.94655 * 319.69882 * 17 16 15 19 19 C 1.36933 * 118.64783 * 137.77540 * 18 17 16 20 20 H 1.08000 * 120.00753 * 207.79200 * 19 18 17 21 21 C 1.38816 * 119.99377 * 27.80312 * 19 18 17 22 22 N 1.31618 * 119.99639 * 200.37697 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 20.37241 * 21 19 18 24 24 H 1.48511 * 109.47132 * 270.00404 * 23 21 19 25 25 H 1.48497 * 109.47412 * 150.00344 * 23 21 19 26 26 H 1.48500 * 109.47033 * 29.99959 * 23 21 19 27 27 C 1.44584 * 122.71009 * 317.50378 * 18 17 16 28 28 H 1.08999 * 109.47257 * 270.26163 * 1 2 3 29 29 H 1.08997 * 109.46866 * 30.26328 * 1 2 3 30 30 H 1.08997 * 109.46922 * 150.26091 * 1 2 3 31 31 H 1.07997 * 118.90309 * 179.70749 * 4 3 2 32 32 H 0.96706 * 113.99986 * 269.97776 * 7 6 5 33 33 H 0.97006 * 119.99469 * 359.97438 * 11 9 8 34 34 H 1.09007 * 108.51128 * 304.31000 * 14 12 11 35 35 H 1.09002 * 108.51742 * 61.95915 * 14 12 11 36 36 H 1.09002 * 109.48981 * 34.95159 * 15 14 12 37 37 H 1.09000 * 109.49253 * 154.99297 * 15 14 12 38 38 H 1.08997 * 109.36572 * 212.07297 * 16 15 14 39 39 H 1.08998 * 109.36755 * 331.69081 * 16 15 14 40 40 H 1.09001 * 109.13418 * 199.01430 * 17 16 15 41 41 H 1.09003 * 108.96162 * 80.26989 * 17 16 15 42 42 H 0.97006 * 119.99898 * 354.89337 * 22 21 19 43 43 H 1.09002 * 109.44899 * 211.02144 * 27 18 17 44 44 H 1.08996 * 109.44971 * 330.96917 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2116 0.0466 -0.0054 6 6 3.6234 -1.1435 0.0003 7 8 4.3619 -2.2769 0.0006 8 6 2.2166 -1.2042 0.0056 9 6 1.5124 -2.5005 0.0110 10 8 1.2264 -3.0326 1.0661 11 7 1.1862 -3.0951 -1.1538 12 6 0.4864 -4.3822 -1.1484 13 1 -0.1965 -4.4179 -0.2996 14 6 -0.2828 -4.5233 -2.3941 15 6 -1.1182 -5.7974 -2.4761 16 6 -0.2589 -6.9266 -2.9889 17 6 0.3832 -7.6866 -1.8095 18 7 0.8370 -6.7707 -0.7447 19 6 0.6055 -7.1151 0.5602 20 1 0.4965 -6.3461 1.3106 21 6 0.5112 -8.4529 0.9186 22 7 -0.0913 -8.7933 2.0382 23 14 1.2392 -9.7699 -0.1880 24 1 0.2147 -10.2165 -1.1660 25 1 1.6727 -10.9258 0.6373 26 1 2.4087 -9.2145 -0.9152 27 6 1.5210 -5.5275 -1.0225 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 4.0088 2.1049 -0.0098 32 1 4.5729 -2.6091 -0.8828 33 1 1.4141 -2.6704 -1.9956 34 1 -0.9493 -3.6659 -2.4884 35 1 0.4126 -4.5135 -3.2334 36 1 -1.4960 -6.0489 -1.4851 37 1 -1.9559 -5.6399 -3.1554 38 1 -0.8740 -7.6139 -3.5697 39 1 0.5276 -6.5219 -3.6259 40 1 1.2379 -8.2562 -2.1744 41 1 -0.3492 -8.3782 -1.3930 42 1 -0.4038 -8.1073 2.6488 43 1 2.2125 -5.3043 -0.2100 44 1 2.0757 -5.6193 -1.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034360805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:50 Heat of formation + Delta-G solvation = -33.508059 kcal Electronic energy + Delta-G solvation = -28016.990785 eV Core-core repulsion = 24162.340314 eV Total energy + Delta-G solvation = -3854.650471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60141 -40.94737 -39.37441 -38.94551 -36.41057 -35.41687 -34.95477 -33.32856 -33.26192 -31.70924 -29.80180 -27.84799 -26.81756 -25.84432 -24.34490 -24.00866 -22.18594 -21.66596 -21.30575 -20.10701 -19.31427 -19.21194 -18.88643 -17.77308 -17.34352 -17.01706 -16.34790 -16.23866 -15.95219 -15.61883 -15.41997 -15.25789 -14.88124 -14.68000 -14.48086 -14.21223 -13.97275 -13.85512 -13.77672 -13.54262 -13.25091 -13.18237 -13.01198 -12.53765 -12.24298 -12.07858 -11.79194 -11.58762 -11.53624 -11.42663 -11.37050 -11.14589 -10.99755 -10.73549 -10.68625 -10.57415 -10.30718 -9.04537 -8.47935 -5.55725 -0.60157 -0.33359 1.27175 1.39703 1.56084 1.72714 1.89223 2.12484 2.37018 2.53305 2.83764 3.07561 3.09673 3.37495 3.54836 3.72520 3.82016 4.02849 4.04022 4.13285 4.17549 4.25456 4.34570 4.45344 4.56802 4.58914 4.62619 4.80804 4.84392 4.86070 4.98957 5.05185 5.10914 5.14670 5.17330 5.30680 5.33629 5.48330 5.59429 5.60530 5.83298 6.26184 6.29291 6.38499 6.79205 6.95781 7.08363 7.66016 8.01633 8.83808 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003768 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.786909 B = 7428.886120 C = 7909.626494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.230 3.770 3 N -0.529 5.529 4 C 0.340 3.660 5 N -0.554 5.554 6 C 0.397 3.603 7 O -0.482 6.482 8 C -0.264 4.264 9 C 0.578 3.422 10 O -0.572 6.572 11 N -0.691 5.691 12 C 0.134 3.866 13 H 0.036 0.964 14 C -0.110 4.110 15 C -0.103 4.103 16 C -0.124 4.124 17 C 0.111 3.889 18 N -0.605 5.605 19 C -0.330 4.330 20 H 0.012 0.988 21 C -0.074 4.074 22 N -0.959 5.959 23 Si 1.116 2.884 24 H -0.263 1.263 25 H -0.313 1.313 26 H -0.266 1.266 27 C 0.155 3.845 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.247 0.753 32 H 0.431 0.569 33 H 0.416 0.584 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.242 0.758 43 H 0.014 0.986 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 19.755 -17.966 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.084 3.916 3 N -0.246 5.246 4 C 0.054 3.946 5 N -0.279 5.279 6 C 0.210 3.790 7 O -0.294 6.294 8 C -0.274 4.274 9 C 0.362 3.638 10 O -0.450 6.450 11 N -0.343 5.343 12 C 0.027 3.973 13 H 0.054 0.946 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.162 4.162 17 C -0.013 4.013 18 N -0.329 5.329 19 C -0.460 4.460 20 H 0.030 0.970 21 C -0.267 4.267 22 N -0.601 5.601 23 Si 0.941 3.059 24 H -0.188 1.188 25 H -0.242 1.242 26 H -0.191 1.191 27 C 0.027 3.973 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.296 0.704 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.199 18.577 -16.887 25.454 hybrid contribution -0.365 0.721 0.907 1.214 sum 3.834 19.298 -15.980 25.347 Atomic orbital electron populations 1.20985 0.85724 1.05573 1.04767 1.22098 0.98610 0.85612 0.85268 1.68429 1.10704 1.28555 1.16872 1.25864 0.86088 0.96981 0.85661 1.68187 1.42777 0.98692 1.18276 1.19527 0.85478 0.86443 0.87599 1.84691 1.72435 1.36039 1.36204 1.21646 0.95324 0.96127 1.14282 1.17869 0.78086 0.83669 0.84195 1.90914 1.54943 1.65871 1.33287 1.45860 1.58703 1.21819 1.07922 1.20773 0.94923 0.82294 0.99355 0.94607 1.20553 0.99210 0.99001 0.96026 1.20850 0.98291 0.94324 1.00704 1.21889 0.99741 0.98177 0.96420 1.21958 0.96795 0.92895 0.89606 1.43872 1.66155 1.21182 1.01657 1.20014 1.47458 0.92269 0.86300 0.96979 1.27577 0.98039 1.00200 1.00933 1.71012 1.39523 1.35423 1.14189 0.83198 0.77013 0.72404 0.73239 1.18822 1.24177 1.19139 1.21077 0.92459 0.85153 0.98606 0.89149 0.86457 0.90130 0.73697 0.70448 0.74586 0.90526 0.88897 0.95071 0.89306 0.89751 0.89722 0.94875 0.93783 0.94886 0.96719 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.85 71.24 0.70 -1.28 16 2 C 0.23 4.97 6.86 42.87 0.29 5.26 16 3 N -0.53 -10.15 10.36 -187.20 -1.94 -12.09 16 4 C 0.34 5.68 12.27 180.86 2.22 7.90 16 5 N -0.55 -12.08 10.45 -312.05 -3.26 -15.35 16 6 C 0.40 9.90 7.85 85.18 0.67 10.56 16 7 O -0.48 -11.98 13.10 -85.58 -1.12 -13.10 16 8 C -0.26 -6.81 5.67 -19.83 -0.11 -6.92 16 9 C 0.58 18.52 5.48 86.69 0.47 19.00 16 10 O -0.57 -26.39 16.76 -3.99 -0.07 -26.46 16 11 N -0.69 -17.39 5.05 -451.48 -2.28 -19.67 16 12 C 0.13 4.35 2.34 43.79 0.10 4.46 16 13 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 14 C -0.11 -2.58 4.55 28.61 0.13 -2.45 16 15 C -0.10 -2.84 5.51 29.76 0.16 -2.68 16 16 C -0.12 -3.37 5.71 30.35 0.17 -3.20 16 17 C 0.11 4.41 4.02 86.61 0.35 4.76 16 18 N -0.61 -28.58 2.03 -697.67 -1.42 -29.99 16 19 C -0.33 -19.92 9.72 84.04 0.82 -19.10 16 20 H 0.01 0.86 8.06 -2.91 -0.02 0.84 16 21 C -0.07 -4.54 5.14 84.86 0.44 -4.10 16 22 N -0.96 -64.31 13.70 21.65 0.30 -64.01 16 23 Si 1.12 54.25 24.39 68.60 1.67 55.93 16 24 H -0.26 -11.31 6.62 99.48 0.66 -10.65 16 25 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 26 H -0.27 -11.83 6.62 99.48 0.66 -11.17 16 27 C 0.16 6.08 5.24 87.37 0.46 6.54 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.45 7.18 -2.39 -0.02 1.43 16 31 H 0.25 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.43 5.75 9.06 -74.05 -0.67 5.08 16 33 H 0.42 6.54 8.57 -92.70 -0.79 5.74 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 35 H 0.09 1.57 7.35 -2.39 -0.02 1.55 16 36 H 0.03 1.17 7.49 -2.39 -0.02 1.15 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.83 7.31 -2.39 -0.02 1.81 16 40 H 0.03 1.27 5.95 -2.39 -0.01 1.25 16 41 H 0.04 1.99 5.28 -2.39 -0.01 1.97 16 42 H 0.24 16.72 8.73 -92.70 -0.81 15.91 16 43 H 0.01 0.68 7.98 -2.39 -0.02 0.66 16 44 H 0.07 2.29 8.06 -2.39 -0.02 2.27 16 Total: -1.00 -89.72 353.75 -1.79 -91.51 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.55 Total: 14.47 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 6.88 Total: 18.76 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -8.60 Total: -141.11 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.19 Total: -39.56 kcal Atomic # 14 Polarization: 54.25 SS G_CDS: 1.67 Total: 55.93 kcal Total: -89.72 -1.79 -91.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034360805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.003 kcal (2) G-P(sol) polarization free energy of solvation -89.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds