Wall clock time and date at job start Tue Mar 31 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48502 * 109.47353 * 239.99814 * 3 2 1 5 5 H 1.48495 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47077 * 120.00112 * 3 2 1 7 7 C 1.38812 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00407 * 195.67609 * 7 2 1 9 9 N 1.36934 * 120.00041 * 15.66903 * 7 2 1 10 10 C 1.44583 * 118.64709 * 206.52617 * 9 7 2 11 11 C 1.54870 * 109.60095 * 270.70210 * 10 9 7 12 12 C 1.47084 * 110.32176 * 288.73212 * 11 10 9 13 13 C 1.52729 * 114.23132 * 62.83580 * 12 11 10 14 14 C 1.50884 * 109.27171 * 274.83038 * 13 12 11 15 15 H 1.09002 * 109.36726 * 331.92495 * 14 13 12 16 16 N 1.46492 * 109.36810 * 212.17530 * 14 13 12 17 17 C 1.34771 * 120.00249 * 154.74443 * 16 14 13 18 18 O 1.21608 * 120.00047 * 0.02562 * 17 16 14 19 19 C 1.47301 * 119.99991 * 180.02562 * 17 16 14 20 20 C 1.37926 * 125.89659 * 179.97438 * 19 17 16 21 21 C 1.39449 * 107.46025 * 180.02562 * 20 19 17 22 22 C 1.37927 * 107.46043 * 0.02562 * 21 20 19 23 23 C 1.47298 * 125.89936 * 179.97438 * 22 21 20 24 24 N 1.34772 * 119.99907 * 180.02562 * 23 22 21 25 25 O 1.21607 * 119.99906 * 0.02783 * 23 22 21 26 26 N 1.36750 * 125.90077 * 0.02562 * 19 17 16 27 27 H 0.96996 * 125.66358 * 359.97438 * 26 19 17 28 28 C 1.47601 * 118.64333 * 26.50303 * 9 7 2 29 29 H 0.96998 * 119.99967 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.44955 * 30.73949 * 10 9 7 31 31 H 1.09000 * 109.45178 * 150.66300 * 10 9 7 32 32 H 1.09003 * 109.32444 * 48.99583 * 11 10 9 33 33 H 1.08997 * 109.32718 * 168.64285 * 11 10 9 34 34 H 1.09005 * 108.51049 * 184.05150 * 12 11 10 35 35 H 1.08996 * 108.51383 * 301.54666 * 12 11 10 36 36 H 1.08995 * 109.45802 * 154.94008 * 13 12 11 37 37 H 1.09002 * 109.60961 * 34.81414 * 13 12 11 38 38 H 0.97010 * 120.00114 * 334.74791 * 16 14 13 39 39 H 1.07997 * 126.27484 * 0.06782 * 20 19 17 40 40 H 1.07998 * 126.27034 * 179.73710 * 21 20 19 41 41 H 0.97005 * 120.00408 * 0.02562 * 24 23 22 42 42 H 0.97006 * 120.00298 * 180.02562 * 24 23 22 43 43 H 1.09001 * 108.95213 * 17.20747 * 28 9 7 44 44 H 1.08998 * 108.95055 * 258.57621 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0601 -1.2197 0.2522 9 7 1.3638 -2.3659 -0.3213 10 6 1.8689 -3.6099 0.2149 11 6 2.9225 -4.2031 -0.7529 12 6 2.2705 -4.7071 -1.9712 13 6 1.5632 -3.6323 -2.7941 14 6 0.1714 -3.4241 -2.2501 15 1 -0.1778 -4.3473 -1.7875 16 7 -0.7292 -3.0592 -3.3464 17 6 -2.0494 -3.3107 -3.2462 18 8 -2.4932 -3.8402 -2.2454 19 6 -2.9547 -2.9442 -4.3488 20 6 -4.3191 -3.1448 -4.3755 21 6 -4.7898 -2.6576 -5.5944 22 6 -3.7047 -2.1685 -6.2914 23 6 -3.7427 -1.5587 -7.6317 24 7 -2.6047 -1.1190 -8.2044 25 8 -4.8008 -1.4521 -8.2215 26 7 -2.5876 -2.3473 -5.5231 27 1 -1.6847 -2.0932 -5.7702 28 6 0.1796 -2.2984 -1.1999 29 1 -0.4850 0.8400 -0.0004 30 1 2.3302 -3.4262 1.1852 31 1 1.0462 -4.3152 0.3323 32 1 3.6412 -3.4290 -1.0221 33 1 3.4438 -5.0235 -0.2598 34 1 3.0264 -5.1814 -2.5972 35 1 1.5393 -5.4629 -1.6849 36 1 1.5030 -3.9525 -3.8342 37 1 2.1213 -2.6980 -2.7325 38 1 -0.3752 -2.6365 -4.1446 39 1 -4.9141 -3.5958 -3.5952 40 1 -5.8153 -2.6664 -5.9328 41 1 -1.7606 -1.2043 -7.7341 42 1 -2.6296 -0.7171 -9.0869 43 1 0.1734 -1.3364 -1.7123 44 1 -0.7195 -2.3779 -0.5889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034395630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:20 Heat of formation + Delta-G solvation = -10.020390 kcal Electronic energy + Delta-G solvation = -27291.056920 eV Core-core repulsion = 23437.424950 eV Total energy + Delta-G solvation = -3853.631970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66758 -39.59677 -38.88535 -37.59266 -34.59790 -34.17309 -33.63081 -31.45972 -30.84156 -30.49152 -29.19668 -26.14789 -24.67292 -24.17382 -23.03555 -21.60290 -20.66431 -20.36929 -19.99645 -19.30834 -19.00091 -17.43936 -16.98436 -16.71936 -15.76385 -15.61144 -15.31574 -14.91353 -14.59860 -14.25428 -14.22588 -14.11414 -13.69055 -13.44143 -13.30514 -13.05947 -12.81630 -12.64438 -12.50178 -12.15724 -11.42855 -11.20943 -11.06671 -10.77887 -10.67420 -10.53205 -10.35756 -10.24545 -10.17688 -10.03429 -9.88793 -9.83512 -9.57226 -9.28124 -8.78207 -8.48312 -8.40577 -6.70583 -5.81697 -3.26895 0.87971 2.09213 2.60019 3.06659 3.09188 3.22572 3.32466 3.39268 3.39429 3.47750 4.44857 4.52479 4.74586 5.08174 5.09157 5.19089 5.25456 5.38614 5.54158 5.59023 5.71951 5.80993 5.93941 5.96945 6.09726 6.22938 6.25870 6.36150 6.40052 6.50915 6.56863 6.58421 6.62275 6.66227 6.78140 6.80029 6.89377 7.00676 7.04611 7.29156 7.64466 7.73184 7.77623 7.80152 8.33404 8.42311 9.18713 9.85587 10.30907 11.24563 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.003585 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.926782 B = 7809.024135 C = 8754.099472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.153 3.847 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.078 0.922 16 N -0.715 5.715 17 C 0.581 3.419 18 O -0.515 6.515 19 C 0.006 3.994 20 C -0.128 4.128 21 C -0.113 4.113 22 C -0.035 4.035 23 C 0.595 3.405 24 N -0.855 5.855 25 O -0.528 6.528 26 N -0.522 5.522 27 H 0.415 0.585 28 C 0.174 3.826 29 H 0.254 0.746 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.387 0.613 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.397 0.603 42 H 0.409 0.591 43 H 0.077 0.923 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -6.068 -14.418 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.308 5.308 10 C 0.025 3.975 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.096 0.904 16 N -0.365 5.365 17 C 0.366 3.634 18 O -0.389 6.389 19 C -0.112 4.112 20 C -0.154 4.154 21 C -0.140 4.140 22 C -0.151 4.151 23 C 0.381 3.619 24 N -0.419 5.419 25 O -0.403 6.403 26 N -0.121 5.121 27 H 0.253 0.747 28 C 0.048 3.952 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.220 0.780 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.225 0.775 42 H 0.241 0.759 43 H 0.095 0.905 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.832 -6.292 -13.924 15.389 hybrid contribution 1.599 1.504 -0.697 2.303 sum -0.233 -4.788 -14.621 15.387 Atomic orbital electron populations 1.70074 1.05134 1.25557 1.53558 1.25055 0.95221 0.98330 1.00709 0.86428 0.78920 0.83615 0.78130 1.21170 1.21694 1.20807 1.19158 0.92428 0.84907 1.42629 0.91616 1.43514 1.32441 1.02093 1.52727 1.20750 0.94132 0.88218 0.94352 1.21503 1.00206 0.99743 0.97358 1.20244 0.99012 0.97337 0.97038 1.21318 0.95629 1.01003 0.97385 1.21886 0.87776 1.01093 0.87819 0.90426 1.46075 1.07003 1.62452 1.20941 1.17136 0.81653 0.79293 0.85322 1.90853 1.75661 1.42707 1.29683 1.20919 0.95854 1.06382 0.88028 1.21326 0.91792 1.03706 0.98564 1.21298 0.98212 1.00702 0.93800 1.20411 0.87692 1.12600 0.94428 1.17167 0.83988 0.77044 0.83681 1.43728 1.09568 1.65446 1.23116 1.90875 1.29775 1.56446 1.63234 1.41929 1.09111 1.46750 1.14292 0.74708 1.21313 0.89349 0.94906 0.89620 0.93577 0.93483 0.94855 0.92062 0.93367 0.93669 0.93123 0.93252 0.89965 0.78013 0.82449 0.82672 0.77514 0.75947 0.90517 0.94854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 11.01 55.49 0.61 -24.90 16 2 C 0.01 0.16 4.87 -17.43 -0.08 0.07 16 3 Si 0.90 20.95 29.58 -169.99 -5.03 15.92 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.81 9.44 -15.06 -0.14 -6.95 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.84 2.27 -172.08 -0.39 -14.23 16 10 C 0.15 3.09 5.66 -4.08 -0.02 3.07 16 11 C -0.15 -2.44 5.74 -28.58 -0.16 -2.60 16 12 C -0.10 -1.46 5.16 -29.71 -0.15 -1.61 16 13 C -0.12 -1.76 5.07 -27.93 -0.14 -1.90 16 14 C 0.12 2.09 2.27 -68.50 -0.16 1.94 16 15 H 0.08 1.48 6.74 -51.93 -0.35 1.13 16 16 N -0.71 -10.47 4.97 -55.48 -0.28 -10.74 16 17 C 0.58 9.42 7.77 -12.58 -0.10 9.33 16 18 O -0.51 -10.46 16.53 5.27 0.09 -10.37 16 19 C 0.01 0.08 7.04 -82.10 -0.58 -0.49 16 20 C -0.13 -1.66 10.60 -39.24 -0.42 -2.07 16 21 C -0.11 -1.34 10.60 -39.24 -0.42 -1.76 16 22 C -0.04 -0.38 7.04 -82.10 -0.58 -0.96 16 23 C 0.60 6.28 8.08 -12.58 -0.10 6.18 16 24 N -0.85 -5.20 8.87 30.40 0.27 -4.93 16 25 O -0.53 -7.52 17.71 5.27 0.09 -7.42 16 26 N -0.52 -5.06 5.90 -5.89 -0.03 -5.09 16 27 H 0.42 2.60 7.34 -40.82 -0.30 2.30 16 28 C 0.17 3.99 4.25 -2.94 -0.01 3.98 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 31 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.75 7.36 -51.93 -0.38 0.37 16 36 H 0.05 0.61 7.94 -51.93 -0.41 0.20 16 37 H 0.08 1.44 7.48 -51.93 -0.39 1.05 16 38 H 0.39 4.26 7.65 -40.82 -0.31 3.95 16 39 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.40 1.36 7.93 -40.82 -0.32 1.04 16 42 H 0.41 1.94 8.93 -40.82 -0.36 1.58 16 43 H 0.08 1.93 6.31 -51.93 -0.33 1.60 16 44 H 0.03 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -34.17 360.24 -8.38 -42.54 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.07 Total: 7.59 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -3.06 Total: 6.21 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.18 Total: -59.89 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.17 -8.38 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034395630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.523 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds