Wall clock time and date at job start Tue Mar 31 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48502 * 109.47353 * 239.99814 * 3 2 1 5 5 H 1.48495 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47077 * 120.00112 * 3 2 1 7 7 C 1.38812 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00407 * 195.67609 * 7 2 1 9 9 N 1.36934 * 120.00041 * 15.66903 * 7 2 1 10 10 C 1.44583 * 118.64709 * 206.52617 * 9 7 2 11 11 C 1.54870 * 109.60095 * 270.70210 * 10 9 7 12 12 C 1.47084 * 110.32176 * 288.73212 * 11 10 9 13 13 C 1.52729 * 114.23132 * 62.83580 * 12 11 10 14 14 C 1.50884 * 109.27171 * 274.83038 * 13 12 11 15 15 H 1.09002 * 109.36726 * 331.92495 * 14 13 12 16 16 N 1.46492 * 109.36810 * 212.17530 * 14 13 12 17 17 C 1.34771 * 120.00249 * 154.74443 * 16 14 13 18 18 O 1.21608 * 120.00047 * 0.02562 * 17 16 14 19 19 C 1.47301 * 119.99991 * 180.02562 * 17 16 14 20 20 C 1.37926 * 125.89659 * 179.97438 * 19 17 16 21 21 C 1.39449 * 107.46025 * 180.02562 * 20 19 17 22 22 C 1.37927 * 107.46043 * 0.02562 * 21 20 19 23 23 C 1.47298 * 125.89936 * 179.97438 * 22 21 20 24 24 N 1.34772 * 119.99907 * 180.02562 * 23 22 21 25 25 O 1.21607 * 119.99906 * 0.02783 * 23 22 21 26 26 N 1.36750 * 125.90077 * 0.02562 * 19 17 16 27 27 H 0.96996 * 125.66358 * 359.97438 * 26 19 17 28 28 C 1.47601 * 118.64333 * 26.50303 * 9 7 2 29 29 H 0.96998 * 119.99967 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.44955 * 30.73949 * 10 9 7 31 31 H 1.09000 * 109.45178 * 150.66300 * 10 9 7 32 32 H 1.09003 * 109.32444 * 48.99583 * 11 10 9 33 33 H 1.08997 * 109.32718 * 168.64285 * 11 10 9 34 34 H 1.09005 * 108.51049 * 184.05150 * 12 11 10 35 35 H 1.08996 * 108.51383 * 301.54666 * 12 11 10 36 36 H 1.08995 * 109.45802 * 154.94008 * 13 12 11 37 37 H 1.09002 * 109.60961 * 34.81414 * 13 12 11 38 38 H 0.97010 * 120.00114 * 334.74791 * 16 14 13 39 39 H 1.07997 * 126.27484 * 0.06782 * 20 19 17 40 40 H 1.07998 * 126.27034 * 179.73710 * 21 20 19 41 41 H 0.97005 * 120.00408 * 0.02562 * 24 23 22 42 42 H 0.97006 * 120.00298 * 180.02562 * 24 23 22 43 43 H 1.09001 * 108.95213 * 17.20747 * 28 9 7 44 44 H 1.08998 * 108.95055 * 258.57621 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0601 -1.2197 0.2522 9 7 1.3638 -2.3659 -0.3213 10 6 1.8689 -3.6099 0.2149 11 6 2.9225 -4.2031 -0.7529 12 6 2.2705 -4.7071 -1.9712 13 6 1.5632 -3.6323 -2.7941 14 6 0.1714 -3.4241 -2.2501 15 1 -0.1778 -4.3473 -1.7875 16 7 -0.7292 -3.0592 -3.3464 17 6 -2.0494 -3.3107 -3.2462 18 8 -2.4932 -3.8402 -2.2454 19 6 -2.9547 -2.9442 -4.3488 20 6 -4.3191 -3.1448 -4.3755 21 6 -4.7898 -2.6576 -5.5944 22 6 -3.7047 -2.1685 -6.2914 23 6 -3.7427 -1.5587 -7.6317 24 7 -2.6047 -1.1190 -8.2044 25 8 -4.8008 -1.4521 -8.2215 26 7 -2.5876 -2.3473 -5.5231 27 1 -1.6847 -2.0932 -5.7702 28 6 0.1796 -2.2984 -1.1999 29 1 -0.4850 0.8400 -0.0004 30 1 2.3302 -3.4262 1.1852 31 1 1.0462 -4.3152 0.3323 32 1 3.6412 -3.4290 -1.0221 33 1 3.4438 -5.0235 -0.2598 34 1 3.0264 -5.1814 -2.5972 35 1 1.5393 -5.4629 -1.6849 36 1 1.5030 -3.9525 -3.8342 37 1 2.1213 -2.6980 -2.7325 38 1 -0.3752 -2.6365 -4.1446 39 1 -4.9141 -3.5958 -3.5952 40 1 -5.8153 -2.6664 -5.9328 41 1 -1.7606 -1.2043 -7.7341 42 1 -2.6296 -0.7171 -9.0869 43 1 0.1734 -1.3364 -1.7123 44 1 -0.7195 -2.3779 -0.5889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034395630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:20 Heat of formation + Delta-G solvation = -36.919445 kcal Electronic energy + Delta-G solvation = -27292.223350 eV Core-core repulsion = 23437.424950 eV Total energy + Delta-G solvation = -3854.798400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64625 -40.84165 -39.91722 -39.06394 -36.14291 -35.23654 -34.93070 -32.73266 -32.45990 -31.75896 -30.31091 -27.93726 -26.07402 -25.59257 -24.45771 -22.74284 -21.67733 -21.67217 -20.98690 -20.92447 -20.03354 -18.59638 -18.32938 -17.83326 -17.27589 -17.03461 -16.48923 -16.08768 -16.00449 -15.63560 -15.43623 -15.28115 -15.13507 -14.89891 -14.52514 -14.34141 -14.08523 -13.81371 -13.77340 -13.72036 -13.01542 -12.93875 -12.79314 -12.45135 -12.23341 -12.07957 -11.88933 -11.64333 -11.53410 -11.40217 -11.20617 -11.13740 -10.87478 -10.50134 -10.21092 -10.16396 -9.45545 -8.65723 -7.84280 -5.32708 -0.11109 1.06234 1.46936 1.47478 1.55244 1.65818 2.00642 2.20333 2.26967 2.38150 2.52365 3.27831 3.58412 3.79092 3.83186 3.93210 4.06761 4.13486 4.20451 4.29155 4.42009 4.45269 4.64529 4.75508 4.84020 4.95496 5.03261 5.07458 5.11992 5.27768 5.30569 5.33130 5.35214 5.47243 5.54795 5.63678 5.63914 5.69844 5.74932 5.80080 6.04552 6.30607 6.39126 6.48481 7.08183 7.10471 7.18360 7.93640 8.33870 9.19497 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.003585 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.926782 B = 7809.024135 C = 8754.099472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.600 5.600 10 C 0.144 3.856 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.106 4.106 14 C 0.135 3.865 15 H 0.064 0.936 16 N -0.702 5.702 17 C 0.581 3.419 18 O -0.565 6.565 19 C -0.012 4.012 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.019 4.019 23 C 0.597 3.403 24 N -0.829 5.829 25 O -0.567 6.567 26 N -0.499 5.499 27 H 0.433 0.567 28 C 0.194 3.806 29 H 0.246 0.754 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.408 0.592 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.413 0.587 42 H 0.420 0.580 43 H 0.050 0.950 44 H -0.025 1.025 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -6.444 -17.053 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.322 5.322 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.144 4.144 14 C 0.030 3.970 15 H 0.082 0.918 16 N -0.353 5.353 17 C 0.368 3.632 18 O -0.443 6.443 19 C -0.130 4.130 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.137 4.137 23 C 0.382 3.618 24 N -0.393 5.393 25 O -0.445 6.445 26 N -0.098 5.098 27 H 0.274 0.726 28 C 0.067 3.933 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.245 0.755 39 H 0.172 0.828 40 H 0.182 0.818 41 H 0.244 0.756 42 H 0.253 0.747 43 H 0.069 0.931 44 H -0.007 1.007 Dipole moment (debyes) X Y Z Total from point charges 0.553 -6.670 -16.608 17.906 hybrid contribution 0.887 1.602 0.152 1.837 sum 1.441 -5.069 -16.456 17.279 Atomic orbital electron populations 1.70282 1.06721 1.25568 1.55661 1.25783 0.95827 1.01429 1.01248 0.85405 0.77494 0.79397 0.78524 1.19746 1.22654 1.20430 1.19495 0.92691 0.85854 1.41283 0.91212 1.43726 1.32241 1.02721 1.53534 1.20964 0.95075 0.87072 0.95096 1.21315 0.98604 1.00025 0.97259 1.20269 0.99838 0.97120 0.96669 1.21256 0.92955 1.00533 0.99688 1.21435 0.90153 0.97940 0.87494 0.91807 1.45847 1.06396 1.62180 1.20904 1.17494 0.82071 0.78273 0.85330 1.90827 1.76542 1.45036 1.31857 1.20376 0.95336 1.08695 0.88593 1.21449 0.91934 1.03528 0.99022 1.21453 0.99183 1.01231 0.93524 1.20542 0.87590 1.11113 0.94503 1.17078 0.84437 0.77022 0.83230 1.43527 1.09006 1.63455 1.23357 1.90870 1.31470 1.58221 1.63967 1.41730 1.09888 1.45429 1.12793 0.72579 1.20938 0.86871 0.95730 0.89748 0.94464 0.94572 0.95161 0.93049 0.90654 0.90219 0.92888 0.89193 0.91889 0.75537 0.82818 0.81789 0.75592 0.74653 0.93133 1.00720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.36 11.01 21.65 0.24 -55.12 16 2 C -0.05 -2.59 4.87 84.86 0.41 -2.18 16 3 Si 0.96 43.54 29.58 68.60 2.03 45.57 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.26 -13.88 9.44 84.03 0.79 -13.09 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 9 N -0.60 -29.01 2.27 -698.34 -1.58 -30.59 16 10 C 0.14 5.85 5.66 87.38 0.49 6.34 16 11 C -0.13 -4.06 5.74 29.39 0.17 -3.90 16 12 C -0.10 -2.67 5.16 28.67 0.15 -2.52 16 13 C -0.11 -2.97 5.07 29.82 0.15 -2.82 16 14 C 0.14 4.76 2.27 44.63 0.10 4.86 16 15 H 0.06 2.47 6.74 -2.39 -0.02 2.45 16 16 N -0.70 -20.12 4.97 -447.70 -2.22 -22.34 16 17 C 0.58 19.12 7.77 86.63 0.67 19.79 16 18 O -0.56 -24.10 16.53 -4.06 -0.07 -24.16 16 19 C -0.01 -0.30 7.04 40.69 0.29 -0.02 16 20 C -0.13 -3.46 10.60 22.49 0.24 -3.22 16 21 C -0.13 -2.92 10.60 22.49 0.24 -2.68 16 22 C -0.02 -0.39 7.04 40.69 0.29 -0.10 16 23 C 0.60 11.25 8.08 86.63 0.70 11.95 16 24 N -0.83 -7.40 8.87 -175.99 -1.56 -8.96 16 25 O -0.57 -15.33 17.71 -4.05 -0.07 -15.40 16 26 N -0.50 -8.64 5.90 -172.55 -1.02 -9.66 16 27 H 0.43 4.06 7.34 -92.71 -0.68 3.38 16 28 C 0.19 9.24 4.25 86.49 0.37 9.61 16 29 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.04 1.50 7.99 -2.39 -0.02 1.48 16 31 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.41 7.36 -2.39 -0.02 1.39 16 36 H 0.09 1.82 7.94 -2.39 -0.02 1.80 16 37 H 0.06 2.07 7.48 -2.39 -0.02 2.05 16 38 H 0.41 8.08 7.65 -92.70 -0.71 7.37 16 39 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.41 1.20 7.93 -92.70 -0.74 0.46 16 42 H 0.42 2.63 8.93 -92.70 -0.83 1.80 16 43 H 0.05 2.65 6.31 -2.39 -0.02 2.63 16 44 H -0.03 -1.48 8.03 -2.39 -0.02 -1.50 16 Total: -1.00 -79.06 360.24 -1.07 -80.13 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -1.87 Total: 18.50 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 5.06 Total: 22.03 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -6.15 Total: -126.67 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.14 Total: -39.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -79.06 -1.07 -80.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034395630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.210 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds