Wall clock time and date at job start Tue Mar 31 2020 12:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21685 * 119.99592 * 359.97438 * 17 16 14 19 19 C 1.46810 * 120.00421 * 180.02562 * 17 16 14 20 20 C 1.36342 * 125.85121 * 179.71687 * 19 17 16 21 21 C 1.41309 * 107.01253 * 179.84882 * 20 19 17 22 22 C 1.47390 * 126.46665 * 180.17523 * 21 20 19 23 23 N 1.34766 * 120.00294 * 180.30125 * 22 21 20 24 24 O 1.21608 * 119.99440 * 0.30487 * 22 21 20 25 25 C 1.38210 * 107.07215 * 0.41180 * 21 20 19 26 26 N 1.34264 * 108.39768 * 359.74537 * 25 21 20 27 27 H 0.96994 * 125.39891 * 179.97438 * 26 25 21 28 28 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 29 29 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 31 31 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 32 32 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 33 33 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 34 34 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 35 35 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 36 36 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 37 37 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 38 38 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 39 39 H 1.08002 * 126.49393 * 0.02562 * 20 19 17 40 40 H 0.97002 * 119.99948 * 0.02562 * 23 22 21 41 41 H 0.97003 * 120.00310 * 179.97438 * 23 22 21 42 42 H 1.07992 * 125.80198 * 179.72651 * 25 21 20 43 43 H 1.08991 * 108.16323 * 33.30724 * 28 9 7 44 44 H 1.09001 * 108.15805 * 149.87591 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6340 -4.9483 -2.4332 19 6 3.8133 -3.2979 -4.0661 20 6 5.0027 -3.6731 -4.6171 21 6 5.2802 -2.7625 -5.6614 22 6 6.4605 -2.7749 -6.5440 23 7 6.5974 -1.8345 -7.4995 24 8 7.3108 -3.6339 -6.4099 25 6 4.2386 -1.8546 -5.6955 26 7 3.3599 -2.1815 -4.7344 27 1 2.5365 -1.7067 -4.5409 28 6 1.8609 -3.6319 -0.0423 29 1 -0.4850 0.8400 0.0004 30 1 0.3194 -2.9907 2.1359 31 1 0.0606 -1.2837 1.6871 32 1 -1.8584 -2.6529 1.1593 33 1 -1.1129 -1.9535 -0.2841 34 1 -0.2672 -4.7215 0.5101 35 1 -1.8782 -4.4986 -0.2328 36 1 -0.6951 -4.5284 -2.1772 37 1 -0.3869 -2.8286 -1.7622 38 1 1.5622 -2.7047 -2.9018 39 1 5.6151 -4.5098 -4.3147 40 1 5.9193 -1.1492 -7.6062 41 1 7.3745 -1.8425 -8.0801 42 1 4.1472 -1.0235 -6.3789 43 1 2.9443 -3.5745 -0.1465 44 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034467405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:33 Heat of formation + Delta-G solvation = -6.605196 kcal Electronic energy + Delta-G solvation = -27642.980602 eV Core-core repulsion = 23789.496726 eV Total energy + Delta-G solvation = -3853.483876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55045 -39.30488 -38.71803 -37.56303 -34.33880 -33.76264 -33.21308 -31.37919 -31.05761 -30.33413 -29.00515 -26.22148 -24.46673 -23.46701 -23.16162 -22.24890 -20.24823 -19.94893 -19.60808 -19.25607 -18.63525 -17.01859 -16.72070 -16.33433 -15.75925 -15.48767 -15.33312 -14.97048 -14.65643 -14.29070 -13.98815 -13.85968 -13.62598 -13.47816 -13.20109 -13.11181 -12.43653 -12.42347 -12.24091 -11.86031 -11.63338 -11.37811 -10.88447 -10.86661 -10.55168 -10.19375 -10.16369 -10.06333 -9.81347 -9.79334 -9.66291 -9.48071 -9.32507 -9.15680 -8.75989 -8.50310 -8.30254 -6.78752 -5.90269 -3.28809 1.46326 1.84870 2.92857 3.26256 3.35218 3.37983 3.39244 3.43383 3.66529 3.74002 4.39467 4.69109 4.84616 5.04483 5.18065 5.23833 5.30706 5.41626 5.57213 5.78033 5.87238 5.95177 6.06474 6.15514 6.18636 6.37868 6.42011 6.45023 6.55963 6.66572 6.70248 6.76754 6.85335 6.91331 6.96485 7.10522 7.15796 7.20092 7.28881 7.54202 7.65163 7.90431 7.93440 8.26665 8.32469 8.56390 9.09250 9.76726 10.30448 11.15899 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004030 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.423814 B = 6946.969398 C = 8311.104071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.894 3.106 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.583 5.583 10 C 0.164 3.836 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.118 3.882 15 H 0.075 0.925 16 N -0.700 5.700 17 C 0.583 3.417 18 O -0.538 6.538 19 C -0.043 4.043 20 C -0.053 4.053 21 C -0.242 4.242 22 C 0.596 3.404 23 N -0.857 5.857 24 O -0.548 6.548 25 C 0.067 3.933 26 N -0.518 5.518 27 H 0.425 0.575 28 C 0.149 3.851 29 H 0.252 0.748 30 H 0.006 0.994 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.394 0.606 39 H 0.157 0.843 40 H 0.398 0.602 41 H 0.402 0.598 42 H 0.178 0.822 43 H 0.039 0.961 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -1.112 -11.855 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.725 3.275 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.081 0.919 9 N -0.303 5.303 10 C 0.040 3.960 11 C -0.168 4.168 12 C -0.151 4.151 13 C -0.148 4.148 14 C 0.011 3.989 15 H 0.093 0.907 16 N -0.348 5.348 17 C 0.369 3.631 18 O -0.416 6.416 19 C -0.155 4.155 20 C -0.079 4.079 21 C -0.253 4.253 22 C 0.383 3.617 23 N -0.421 5.421 24 O -0.425 6.425 25 C -0.076 4.076 26 N -0.112 5.112 27 H 0.263 0.737 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.227 0.773 39 H 0.174 0.826 40 H 0.226 0.774 41 H 0.232 0.768 42 H 0.195 0.805 43 H 0.057 0.943 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.220 -2.271 -11.099 11.394 hybrid contribution -0.285 2.136 -0.576 2.230 sum 0.935 -0.136 -11.675 11.713 Atomic orbital electron populations 1.69971 1.04927 1.25108 1.54496 1.24851 0.95177 0.97908 1.01656 0.86405 0.79133 0.84140 0.77844 1.21545 1.22048 1.20706 1.19182 0.93439 0.85309 1.38939 0.91851 1.44249 1.33778 1.00782 1.51538 1.20180 0.85362 1.00456 0.89959 1.20999 0.98102 0.95492 1.02245 1.20976 0.98670 0.98942 0.96486 1.21671 0.93362 1.02185 0.97533 1.22776 0.91879 0.95951 0.88308 0.90681 1.45899 1.21793 1.31634 1.35462 1.16978 0.80974 0.83671 0.81500 1.90817 1.65358 1.26462 1.58939 1.20368 0.99473 0.93991 1.01679 1.21029 0.93935 0.99149 0.93774 1.19525 0.98398 1.02644 1.04706 1.17418 0.84705 0.80433 0.79126 1.43681 1.28167 1.32630 1.37588 1.90817 1.43195 1.37519 1.70994 1.22330 0.90678 1.00268 0.94290 1.41834 1.20310 1.23111 1.25964 0.73676 1.20712 0.97080 0.88492 0.91822 0.93804 0.97591 0.89319 0.95622 0.88211 0.92332 0.93184 0.94221 0.90312 0.77294 0.82557 0.77432 0.76786 0.80501 0.94299 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 9.43 55.49 0.52 -22.03 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.89 20.14 29.60 -169.99 -5.03 15.11 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.24 -5.90 9.62 -15.06 -0.14 -6.05 16 8 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 9 N -0.58 -13.19 2.61 -175.41 -0.46 -13.65 16 10 C 0.16 3.58 5.25 -5.20 -0.03 3.55 16 11 C -0.13 -2.54 5.02 -30.18 -0.15 -2.70 16 12 C -0.11 -1.89 5.76 -28.40 -0.16 -2.06 16 13 C -0.11 -1.83 5.23 -27.19 -0.14 -1.97 16 14 C 0.12 2.10 2.91 -66.22 -0.19 1.91 16 15 H 0.08 1.35 7.57 -51.93 -0.39 0.96 16 16 N -0.70 -11.65 5.08 -53.41 -0.27 -11.92 16 17 C 0.58 10.27 7.60 -12.79 -0.10 10.18 16 18 O -0.54 -11.24 16.52 5.20 0.09 -11.15 16 19 C -0.04 -0.65 6.99 -82.41 -0.58 -1.22 16 20 C -0.05 -0.82 10.37 -39.10 -0.41 -1.23 16 21 C -0.24 -3.07 6.13 -105.02 -0.64 -3.71 16 22 C 0.60 7.61 8.09 -12.54 -0.10 7.51 16 23 N -0.86 -6.42 8.86 30.42 0.27 -6.15 16 24 O -0.55 -9.45 17.75 5.27 0.09 -9.35 16 25 C 0.07 0.62 11.43 -16.50 -0.19 0.43 16 26 N -0.52 -5.66 5.91 -9.31 -0.05 -5.71 16 27 H 0.42 3.77 8.14 -40.82 -0.33 3.43 16 28 C 0.15 3.05 4.75 -4.92 -0.02 3.03 16 29 H 0.25 6.28 8.31 -40.82 -0.34 5.94 16 30 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 31 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 2.22 5.28 -51.93 -0.27 1.95 16 34 H 0.06 0.98 6.28 -51.93 -0.33 0.66 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.48 6.58 -51.93 -0.34 1.14 16 38 H 0.39 6.00 7.52 -40.82 -0.31 5.69 16 39 H 0.16 2.57 8.06 -52.49 -0.42 2.14 16 40 H 0.40 1.65 7.74 -40.82 -0.32 1.34 16 41 H 0.40 2.50 8.93 -40.82 -0.36 2.14 16 42 H 0.18 0.76 7.44 -52.49 -0.39 0.37 16 43 H 0.04 0.88 7.80 -51.93 -0.41 0.47 16 44 H 0.04 0.75 6.89 -51.93 -0.36 0.40 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -32.21 354.18 -8.23 -40.44 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.79 Total: 11.45 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.94 Total: 7.63 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.01 Total: -59.46 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.18 Total: -20.50 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.21 -8.23 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034467405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.835 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds