Wall clock time and date at job start Tue Mar 31 2020 12:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21685 * 119.99592 * 359.97438 * 17 16 14 19 19 C 1.46810 * 120.00421 * 180.02562 * 17 16 14 20 20 C 1.36342 * 125.85121 * 179.71687 * 19 17 16 21 21 C 1.41309 * 107.01253 * 179.84882 * 20 19 17 22 22 C 1.47390 * 126.46665 * 180.17523 * 21 20 19 23 23 N 1.34766 * 120.00294 * 180.30125 * 22 21 20 24 24 O 1.21608 * 119.99440 * 0.30487 * 22 21 20 25 25 C 1.38210 * 107.07215 * 0.41180 * 21 20 19 26 26 N 1.34264 * 108.39768 * 359.74537 * 25 21 20 27 27 H 0.96994 * 125.39891 * 179.97438 * 26 25 21 28 28 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 29 29 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 31 31 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 32 32 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 33 33 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 34 34 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 35 35 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 36 36 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 37 37 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 38 38 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 39 39 H 1.08002 * 126.49393 * 0.02562 * 20 19 17 40 40 H 0.97002 * 119.99948 * 0.02562 * 23 22 21 41 41 H 0.97003 * 120.00310 * 179.97438 * 23 22 21 42 42 H 1.07992 * 125.80198 * 179.72651 * 25 21 20 43 43 H 1.08991 * 108.16323 * 33.30724 * 28 9 7 44 44 H 1.09001 * 108.15805 * 149.87591 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6340 -4.9483 -2.4332 19 6 3.8133 -3.2979 -4.0661 20 6 5.0027 -3.6731 -4.6171 21 6 5.2802 -2.7625 -5.6614 22 6 6.4605 -2.7749 -6.5440 23 7 6.5974 -1.8345 -7.4995 24 8 7.3108 -3.6339 -6.4099 25 6 4.2386 -1.8546 -5.6955 26 7 3.3599 -2.1815 -4.7344 27 1 2.5365 -1.7067 -4.5409 28 6 1.8609 -3.6319 -0.0423 29 1 -0.4850 0.8400 0.0004 30 1 0.3194 -2.9907 2.1359 31 1 0.0606 -1.2837 1.6871 32 1 -1.8584 -2.6529 1.1593 33 1 -1.1129 -1.9535 -0.2841 34 1 -0.2672 -4.7215 0.5101 35 1 -1.8782 -4.4986 -0.2328 36 1 -0.6951 -4.5284 -2.1772 37 1 -0.3869 -2.8286 -1.7622 38 1 1.5622 -2.7047 -2.9018 39 1 5.6151 -4.5098 -4.3147 40 1 5.9193 -1.1492 -7.6062 41 1 7.3745 -1.8425 -8.0801 42 1 4.1472 -1.0235 -6.3789 43 1 2.9443 -3.5745 -0.1465 44 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034467405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:32 Heat of formation + Delta-G solvation = -31.757918 kcal Electronic energy + Delta-G solvation = -27644.071306 eV Core-core repulsion = 23789.496726 eV Total energy + Delta-G solvation = -3854.574580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.58263 -40.66588 -39.81229 -39.09072 -35.91564 -34.82404 -34.64085 -32.92045 -32.34243 -31.77387 -30.16821 -27.95303 -25.94651 -24.91116 -24.31000 -23.59364 -21.64639 -21.17182 -20.85901 -20.53240 -19.82380 -18.55052 -17.87769 -17.34020 -17.09597 -16.85845 -16.72045 -16.39812 -15.98386 -15.71537 -15.48162 -15.12395 -15.07488 -14.65849 -14.46176 -14.37615 -14.04144 -13.80112 -13.44176 -13.36121 -13.25495 -13.18902 -12.68194 -12.38318 -12.30641 -11.90957 -11.81659 -11.31704 -11.26108 -11.15817 -11.05747 -10.92378 -10.63700 -10.46817 -10.19361 -10.06665 -9.38240 -8.60106 -7.79860 -5.20041 0.44269 0.77746 1.44387 1.52479 1.56531 1.98851 2.17597 2.29778 2.53652 2.58491 2.79100 3.32496 3.60532 3.82941 3.89861 3.97626 4.05945 4.17523 4.28195 4.42109 4.53511 4.61464 4.68431 4.81878 4.84280 4.89745 4.92803 5.06587 5.21809 5.31749 5.34573 5.37544 5.45379 5.54867 5.61696 5.68939 5.72281 5.80747 5.98507 6.23227 6.30982 6.43250 6.58273 6.62888 7.19849 7.21055 7.45841 7.92083 8.43549 9.23165 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004030 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.423814 B = 6946.969398 C = 8311.104071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.027 4.027 3 Si 0.945 3.055 4 H -0.300 1.300 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.046 0.954 9 N -0.592 5.592 10 C 0.166 3.834 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.098 4.098 14 C 0.125 3.875 15 H 0.076 0.924 16 N -0.693 5.693 17 C 0.581 3.419 18 O -0.581 6.581 19 C -0.068 4.068 20 C -0.072 4.072 21 C -0.268 4.268 22 C 0.593 3.407 23 N -0.828 5.828 24 O -0.606 6.606 25 C 0.118 3.882 26 N -0.507 5.507 27 H 0.437 0.563 28 C 0.154 3.846 29 H 0.248 0.752 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.402 0.598 39 H 0.129 0.871 40 H 0.418 0.582 41 H 0.411 0.589 42 H 0.241 0.759 43 H 0.009 0.991 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 0.422 -13.878 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.224 4.224 3 Si 0.776 3.224 4 H -0.228 1.228 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.063 0.937 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.136 4.136 14 C 0.017 3.983 15 H 0.094 0.906 16 N -0.341 5.341 17 C 0.369 3.631 18 O -0.462 6.462 19 C -0.179 4.179 20 C -0.099 4.099 21 C -0.278 4.278 22 C 0.381 3.619 23 N -0.392 5.392 24 O -0.488 6.488 25 C -0.026 4.026 26 N -0.102 5.102 27 H 0.279 0.721 28 C 0.024 3.976 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.237 0.763 39 H 0.147 0.853 40 H 0.250 0.750 41 H 0.243 0.757 42 H 0.257 0.743 43 H 0.027 0.973 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.135 -0.679 -13.160 13.178 hybrid contribution 0.160 1.709 0.049 1.717 sum 0.025 1.029 -13.111 13.151 Atomic orbital electron populations 1.70085 1.05396 1.25112 1.54641 1.25255 0.95770 0.99535 1.01791 0.85622 0.78248 0.81656 0.76919 1.22756 1.21635 1.20698 1.19098 0.92788 0.86445 1.39274 0.93662 1.44276 1.34134 1.00861 1.52044 1.20123 0.86101 0.99021 0.90482 1.20817 0.97248 0.96631 1.01281 1.20951 1.00292 0.97143 0.96010 1.21552 0.92170 1.01579 0.98293 1.22564 0.92808 0.95817 0.87086 0.90640 1.45790 1.21565 1.31739 1.35004 1.17340 0.80794 0.83197 0.81780 1.90780 1.66390 1.28463 1.60569 1.19824 0.99749 0.96088 1.02223 1.21014 0.94168 0.99410 0.95275 1.19575 0.99975 1.03438 1.04762 1.17504 0.84052 0.80587 0.79755 1.43392 1.28801 1.31346 1.35635 1.90792 1.45095 1.40101 1.72810 1.23209 0.87633 0.99322 0.92458 1.41811 1.20962 1.21837 1.25617 0.72146 1.20663 0.95344 0.87917 0.93651 0.94207 0.96631 0.92307 0.94649 0.90650 0.92184 0.90421 0.91595 0.92189 0.76338 0.85286 0.74994 0.75675 0.74256 0.97301 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.26 9.43 21.65 0.20 -45.06 16 2 C -0.03 -1.31 4.91 84.86 0.42 -0.89 16 3 Si 0.94 41.16 29.60 68.60 2.03 43.20 16 4 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.25 -12.27 9.62 84.03 0.81 -11.46 16 8 H 0.05 2.40 7.89 -2.91 -0.02 2.38 16 9 N -0.59 -26.98 2.61 -708.86 -1.85 -28.84 16 10 C 0.17 7.22 5.25 83.58 0.44 7.66 16 11 C -0.12 -4.61 5.02 28.36 0.14 -4.46 16 12 C -0.11 -3.31 5.76 29.51 0.17 -3.14 16 13 C -0.10 -3.09 5.23 30.30 0.16 -2.93 16 14 C 0.12 4.39 2.91 46.10 0.13 4.52 16 15 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 16 N -0.69 -23.03 5.08 -441.12 -2.24 -25.27 16 17 C 0.58 21.01 7.60 86.48 0.66 21.67 16 18 O -0.58 -25.49 16.52 -4.30 -0.07 -25.57 16 19 C -0.07 -2.02 6.99 40.01 0.28 -1.74 16 20 C -0.07 -2.30 10.37 22.58 0.23 -2.06 16 21 C -0.27 -6.39 6.13 -20.12 -0.12 -6.52 16 22 C 0.59 14.45 8.09 86.65 0.70 15.15 16 23 N -0.83 -9.79 8.86 -175.92 -1.56 -11.35 16 24 O -0.61 -21.40 17.75 -4.06 -0.07 -21.47 16 25 C 0.12 1.70 11.43 84.31 0.96 2.66 16 26 N -0.51 -9.79 5.91 -183.35 -1.08 -10.87 16 27 H 0.44 6.39 8.14 -92.71 -0.75 5.64 16 28 C 0.15 6.37 4.75 87.42 0.41 6.78 16 29 H 0.25 12.28 8.31 -92.71 -0.77 11.51 16 30 H 0.02 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.06 2.91 6.06 -2.39 -0.01 2.90 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 3.30 5.28 -2.39 -0.01 3.29 16 34 H 0.06 1.88 6.28 -2.39 -0.02 1.86 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.17 6.58 -2.39 -0.02 2.15 16 38 H 0.40 11.93 7.52 -92.71 -0.70 11.23 16 39 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.42 1.42 7.74 -92.71 -0.72 0.70 16 41 H 0.41 3.99 8.93 -92.71 -0.83 3.16 16 42 H 0.24 0.31 7.44 -2.91 -0.02 0.29 16 43 H 0.01 0.41 7.80 -2.39 -0.02 0.39 16 44 H 0.05 1.78 6.89 -2.39 -0.02 1.77 16 Total: -1.00 -74.65 354.18 -1.15 -75.80 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -1.90 Total: 24.19 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 5.40 Total: 25.24 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -6.53 Total: -121.39 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.14 Total: -47.04 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.20 kcal Total: -74.65 -1.15 -75.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034467405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.042 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds