Wall clock time and date at job start Tue Mar 31 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 13 13 C 1.52999 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 13 12 10 15 15 H 1.09002 * 109.46935 * 299.99411 * 14 13 12 16 16 N 1.46500 * 109.47094 * 179.97438 * 14 13 12 17 17 C 1.34779 * 119.99793 * 84.99912 * 16 14 13 18 18 O 1.21568 * 120.00527 * 359.97438 * 17 16 14 19 19 C 1.47725 * 119.99950 * 179.97438 * 17 16 14 20 20 C 1.40938 * 125.97666 * 179.97438 * 19 17 16 21 21 C 1.36172 * 107.95418 * 179.76815 * 20 19 17 22 22 N 1.35803 * 107.31241 * 0.54655 * 21 20 19 23 23 N 1.31846 * 125.97152 * 359.69369 * 19 17 16 24 24 C 1.47425 * 108.07157 * 179.17709 * 22 21 20 25 25 C 1.54646 * 102.34681 * 344.68445 * 24 22 21 26 26 O 1.36117 * 140.88093 * 180.69227 * 21 20 19 27 27 C 1.52997 * 109.47452 * 59.99536 * 14 13 12 28 28 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 29 29 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47853 * 300.00060 * 12 10 9 32 32 H 1.09002 * 109.47153 * 60.00089 * 12 10 9 33 33 H 1.09000 * 109.47486 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.46716 * 60.00091 * 13 12 10 35 35 H 0.97004 * 120.00223 * 264.99822 * 16 14 13 36 36 H 1.08010 * 126.02307 * 359.73959 * 20 19 17 37 37 H 1.09003 * 110.82768 * 226.47137 * 24 22 21 38 38 H 1.08996 * 110.82935 * 102.90132 * 24 22 21 39 39 H 1.08997 * 110.85028 * 266.66195 * 25 24 22 40 40 H 1.08997 * 111.02480 * 143.11288 * 25 24 22 41 41 H 1.08993 * 109.47194 * 179.97438 * 27 14 13 42 42 H 1.09002 * 109.46695 * 59.99734 * 27 14 13 43 43 H 1.08992 * 109.47399 * 300.00063 * 28 10 9 44 44 H 1.09004 * 109.46724 * 60.00549 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 6 3.1874 -5.3616 1.4338 14 6 2.3092 -6.4564 0.8245 15 1 1.3990 -6.5625 1.4147 16 7 3.0414 -7.7253 0.8230 17 6 3.0336 -8.5091 1.9194 18 8 2.4195 -8.1630 2.9098 19 6 3.7714 -9.7889 1.9177 20 6 3.8489 -10.7014 2.9890 21 6 4.6155 -11.7535 2.5896 22 7 5.0147 -11.5023 1.3161 23 7 4.4684 -10.2797 0.9118 24 6 5.8636 -12.6234 0.8734 25 6 6.1998 -13.3304 2.2070 26 8 5.0945 -12.9438 3.0442 27 6 1.9442 -6.0770 -0.6120 28 6 1.1802 -4.7519 -0.6110 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 3.0482 -3.2562 1.8691 32 1 1.5127 -4.1427 2.0250 33 1 3.4470 -5.6321 2.4573 34 1 4.0976 -5.2555 0.8436 35 1 3.5317 -8.0014 0.0329 36 1 3.3828 -10.5861 3.9565 37 1 6.7691 -12.2566 0.3901 38 1 5.3114 -13.2892 0.2101 39 1 7.1419 -12.9631 2.6140 40 1 6.2299 -14.4124 2.0793 41 1 1.3190 -6.8571 -1.0462 42 1 2.8545 -5.9708 -1.2022 43 1 0.2700 -4.8584 -0.0210 44 1 0.9202 -4.4815 -1.6345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034664401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:37 Heat of formation + Delta-G solvation = 35.455747 kcal Electronic energy + Delta-G solvation = -26155.359925 eV Core-core repulsion = 22303.699948 eV Total energy + Delta-G solvation = -3851.659976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72475 -40.11499 -38.85727 -37.75032 -34.85526 -33.78316 -33.01172 -30.92316 -30.35912 -30.11301 -29.27924 -27.41356 -24.94473 -23.64432 -22.94654 -22.26097 -21.82470 -20.89375 -20.24196 -19.37224 -18.22730 -17.50825 -16.95856 -16.76110 -16.41383 -15.87076 -15.45948 -15.23214 -15.06097 -14.54105 -14.30737 -13.93106 -13.81488 -13.66441 -13.49991 -13.27375 -12.96704 -12.86611 -12.51685 -11.99631 -11.83479 -11.75784 -11.41953 -11.34235 -11.00202 -10.76946 -10.72424 -10.64495 -10.23541 -10.13207 -10.04324 -9.71999 -9.64419 -9.54838 -8.96154 -8.93437 -8.79922 -6.89089 -5.70793 -2.99033 0.95452 1.37242 1.73400 2.29837 3.06955 3.20782 3.37961 3.47745 3.52106 3.53069 3.95277 4.02370 4.32869 4.47465 4.63308 4.64075 4.83602 4.85078 4.98561 5.09768 5.17202 5.33552 5.50422 5.56902 5.66396 5.73268 5.78576 5.89151 5.93335 5.98193 6.08468 6.28649 6.30115 6.35677 6.39002 6.53442 6.62072 6.69216 6.78235 6.99480 7.05138 7.21213 7.47002 7.75101 8.07632 8.48223 9.58937 10.18075 10.52634 11.51927 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.002020 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.891285 B =13859.664631 C =13875.553782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.125 4.125 14 C 0.145 3.855 15 H 0.091 0.909 16 N -0.708 5.708 17 C 0.601 3.399 18 O -0.518 6.518 19 C 0.059 3.941 20 C -0.212 4.212 21 C 0.233 3.767 22 N -0.414 5.414 23 N -0.219 5.219 24 C 0.098 3.902 25 C 0.041 3.959 26 O -0.278 6.278 27 C -0.119 4.119 28 C -0.120 4.120 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.404 0.596 36 H 0.167 0.833 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.976 -30.596 0.936 33.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.164 4.164 14 C 0.041 3.959 15 H 0.110 0.890 16 N -0.358 5.358 17 C 0.383 3.617 18 O -0.391 6.391 19 C -0.108 4.108 20 C -0.242 4.242 21 C 0.065 3.935 22 N -0.211 5.211 23 N -0.050 5.050 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.185 6.185 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.239 0.761 36 H 0.184 0.816 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.012 -30.160 0.511 32.851 hybrid contribution 0.434 0.445 0.329 0.703 sum 13.446 -29.715 0.840 32.626 Atomic orbital electron populations 1.69653 1.05064 1.25658 1.57857 1.24739 0.95513 0.97636 1.03242 0.86283 0.78508 0.83708 0.77787 1.21362 1.21762 1.21332 1.19199 0.90933 0.84187 1.42420 0.91296 1.42420 1.05789 0.99784 1.88567 1.20249 0.94297 0.85967 0.92830 0.93594 1.22221 0.99814 0.94431 1.00800 1.21916 0.98608 0.95305 1.00566 1.21218 0.95497 0.81295 0.97855 0.89048 1.46042 1.52614 1.21491 1.15696 1.16762 0.80046 0.81138 0.83757 1.90846 1.42824 1.72393 1.33040 1.22054 0.99747 0.96906 0.92120 1.20092 1.10204 0.91335 1.02575 1.20763 0.98549 0.88229 0.85936 1.50669 1.41536 1.17010 1.11868 1.77656 1.14600 0.91879 1.20830 1.23263 0.95615 0.84843 0.98562 1.24467 0.90066 1.02519 0.86438 1.87154 1.46771 1.30941 1.53660 1.21745 1.00961 0.98332 0.94710 1.21743 0.98957 0.93380 1.01812 0.93540 0.78297 0.91753 0.92391 0.92179 0.92199 0.76074 0.81580 0.86826 0.87598 0.88689 0.85082 0.91750 0.91474 0.91885 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.27 5.12 -53.43 -0.27 -18.54 16 10 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.43 5.50 -26.73 -0.15 -2.57 16 13 C -0.12 -1.90 5.49 -26.73 -0.15 -2.05 16 14 C 0.14 1.99 2.45 -67.93 -0.17 1.82 16 15 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 16 N -0.71 -8.71 5.07 -54.79 -0.28 -8.99 16 17 C 0.60 8.40 7.79 -12.38 -0.10 8.31 16 18 O -0.52 -8.85 16.56 5.31 0.09 -8.76 16 19 C 0.06 0.74 7.09 -82.96 -0.59 0.15 16 20 C -0.21 -2.48 10.60 -39.30 -0.42 -2.90 16 21 C 0.23 2.32 8.32 -16.54 -0.14 2.19 16 22 N -0.41 -3.80 5.01 -59.64 -0.30 -4.10 16 23 N -0.22 -2.52 12.39 33.32 0.41 -2.11 16 24 C 0.10 0.35 8.10 -2.67 -0.02 0.33 16 25 C 0.04 0.10 8.08 38.02 0.31 0.41 16 26 O -0.28 -2.13 11.19 -20.11 -0.23 -2.35 16 27 C -0.12 -1.52 5.39 -26.76 -0.14 -1.67 16 28 C -0.12 -1.94 5.39 -26.75 -0.14 -2.09 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 4.19 8.30 -40.82 -0.34 3.85 16 36 H 0.17 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.13 -0.10 8.14 -51.93 -0.42 -0.53 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -35.16 365.33 -8.02 -43.18 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.51 Total: 8.38 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.14 Total: -2.07 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.29 Total: -61.52 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.14 Total: -11.12 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.16 -8.02 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034664401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.631 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds