Wall clock time and date at job start Tue Mar 31 2020 12:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 13 13 C 1.52999 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 13 12 10 15 15 H 1.09002 * 109.46935 * 299.99411 * 14 13 12 16 16 N 1.46500 * 109.47094 * 179.97438 * 14 13 12 17 17 C 1.34779 * 119.99793 * 84.99912 * 16 14 13 18 18 O 1.21568 * 120.00527 * 359.97438 * 17 16 14 19 19 C 1.47725 * 119.99950 * 179.97438 * 17 16 14 20 20 C 1.40938 * 125.97666 * 179.97438 * 19 17 16 21 21 C 1.36172 * 107.95418 * 179.76815 * 20 19 17 22 22 N 1.35803 * 107.31241 * 0.54655 * 21 20 19 23 23 N 1.31846 * 125.97152 * 359.69369 * 19 17 16 24 24 C 1.47425 * 108.07157 * 179.17709 * 22 21 20 25 25 C 1.54646 * 102.34681 * 344.68445 * 24 22 21 26 26 O 1.36117 * 140.88093 * 180.69227 * 21 20 19 27 27 C 1.52997 * 109.47452 * 59.99536 * 14 13 12 28 28 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 29 29 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47853 * 300.00060 * 12 10 9 32 32 H 1.09002 * 109.47153 * 60.00089 * 12 10 9 33 33 H 1.09000 * 109.47486 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.46716 * 60.00091 * 13 12 10 35 35 H 0.97004 * 120.00223 * 264.99822 * 16 14 13 36 36 H 1.08010 * 126.02307 * 359.73959 * 20 19 17 37 37 H 1.09003 * 110.82768 * 226.47137 * 24 22 21 38 38 H 1.08996 * 110.82935 * 102.90132 * 24 22 21 39 39 H 1.08997 * 110.85028 * 266.66195 * 25 24 22 40 40 H 1.08997 * 111.02480 * 143.11288 * 25 24 22 41 41 H 1.08993 * 109.47194 * 179.97438 * 27 14 13 42 42 H 1.09002 * 109.46695 * 59.99734 * 27 14 13 43 43 H 1.08992 * 109.47399 * 300.00063 * 28 10 9 44 44 H 1.09004 * 109.46724 * 60.00549 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 6 3.1874 -5.3616 1.4338 14 6 2.3092 -6.4564 0.8245 15 1 1.3990 -6.5625 1.4147 16 7 3.0414 -7.7253 0.8230 17 6 3.0336 -8.5091 1.9194 18 8 2.4195 -8.1630 2.9098 19 6 3.7714 -9.7889 1.9177 20 6 3.8489 -10.7014 2.9890 21 6 4.6155 -11.7535 2.5896 22 7 5.0147 -11.5023 1.3161 23 7 4.4684 -10.2797 0.9118 24 6 5.8636 -12.6234 0.8734 25 6 6.1998 -13.3304 2.2070 26 8 5.0945 -12.9438 3.0442 27 6 1.9442 -6.0770 -0.6120 28 6 1.1802 -4.7519 -0.6110 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 3.0482 -3.2562 1.8691 32 1 1.5127 -4.1427 2.0250 33 1 3.4470 -5.6321 2.4573 34 1 4.0976 -5.2555 0.8436 35 1 3.5317 -8.0014 0.0329 36 1 3.3828 -10.5861 3.9565 37 1 6.7691 -12.2566 0.3901 38 1 5.3114 -13.2892 0.2101 39 1 7.1419 -12.9631 2.6140 40 1 6.2299 -14.4124 2.0793 41 1 1.3190 -6.8571 -1.0462 42 1 2.8545 -5.9708 -1.2022 43 1 0.2700 -4.8584 -0.0210 44 1 0.9202 -4.4815 -1.6345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034664401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:36 Heat of formation + Delta-G solvation = 8.114471 kcal Electronic energy + Delta-G solvation = -26156.545532 eV Core-core repulsion = 22303.699948 eV Total energy + Delta-G solvation = -3852.845583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.38018 -41.16204 -39.71926 -38.97635 -36.40088 -34.72674 -34.27079 -32.52954 -31.68012 -31.04892 -29.97060 -28.90057 -26.02174 -25.07504 -23.82967 -23.52752 -22.57753 -22.19154 -21.33670 -20.71097 -19.17309 -18.78074 -18.09667 -17.55465 -17.33016 -16.85754 -16.59055 -16.25338 -16.08224 -15.83185 -15.37270 -15.16492 -15.10294 -14.98160 -14.63831 -14.28969 -13.99709 -13.96170 -13.45164 -13.16322 -13.13456 -13.06778 -12.78944 -12.45626 -12.34351 -12.23694 -12.16304 -12.14740 -12.01302 -11.67878 -11.47253 -11.29547 -11.17858 -10.81455 -10.35793 -10.06305 -9.69507 -8.96763 -7.90969 -5.18887 0.10507 0.78124 0.92381 1.47782 1.50963 1.56794 1.66316 2.18990 2.21759 2.58622 3.01002 3.36640 3.41469 3.72504 3.80528 3.84632 3.86883 3.91272 4.11842 4.24410 4.30631 4.38938 4.41475 4.44630 4.47031 4.54745 4.61805 4.63280 4.67034 4.75100 4.87177 5.01417 5.10566 5.15262 5.16987 5.27354 5.30223 5.42004 5.52876 5.57258 5.66690 5.75642 6.20981 6.31663 6.50618 7.04670 7.37077 8.15238 8.37696 9.32458 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.002020 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.891285 B =13859.664631 C =13875.553782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.047 0.953 12 C -0.122 4.122 13 C -0.113 4.113 14 C 0.151 3.849 15 H 0.074 0.926 16 N -0.693 5.693 17 C 0.602 3.398 18 O -0.558 6.558 19 C 0.043 3.957 20 C -0.241 4.241 21 C 0.239 3.761 22 N -0.409 5.409 23 N -0.227 5.227 24 C 0.087 3.913 25 C 0.039 3.961 26 O -0.291 6.291 27 C -0.106 4.106 28 C -0.112 4.112 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.161 0.839 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.170 0.830 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.482 -33.195 -0.416 36.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.063 3.937 11 H 0.066 0.934 12 C -0.163 4.163 13 C -0.153 4.153 14 C 0.047 3.953 15 H 0.092 0.908 16 N -0.344 5.344 17 C 0.385 3.615 18 O -0.434 6.434 19 C -0.123 4.123 20 C -0.271 4.271 21 C 0.070 3.930 22 N -0.207 5.207 23 N -0.058 5.058 24 C -0.031 4.031 25 C -0.036 4.036 26 O -0.198 6.198 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.255 0.745 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.187 0.813 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.592 -32.827 -0.874 36.352 hybrid contribution -0.223 1.048 0.752 1.309 sum 15.369 -31.778 -0.122 35.300 Atomic orbital electron populations 1.69817 1.06552 1.25937 1.59872 1.25555 0.96391 1.01050 1.04201 0.85240 0.77184 0.79408 0.78125 1.20238 1.22319 1.20713 1.19589 0.91377 0.85332 1.40492 0.90736 1.42658 1.05457 1.01090 1.88585 1.20501 0.94546 0.85033 0.93599 0.93446 1.22019 0.99117 0.95673 0.99463 1.21780 0.98943 0.93881 1.00661 1.21004 0.94588 0.81435 0.98242 0.90795 1.45825 1.52178 1.20558 1.15849 1.16979 0.79501 0.81639 0.83343 1.90821 1.44598 1.73475 1.34471 1.21723 1.00891 0.96664 0.92996 1.20149 1.11713 0.92571 1.02670 1.20714 0.97597 0.88383 0.86280 1.51098 1.41015 1.16783 1.11806 1.77527 1.14641 0.93123 1.20539 1.23836 0.96103 0.83471 0.99679 1.24952 0.88992 1.04715 0.84906 1.87163 1.48311 1.29508 1.54787 1.21647 1.01799 0.96820 0.94151 1.21622 0.98429 0.93885 1.01165 0.94175 0.79676 0.93947 0.93929 0.93032 0.90626 0.74533 0.82171 0.84472 0.85550 0.87206 0.81279 0.89292 0.89502 0.92582 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.24 -13.30 9.93 84.03 0.83 -12.47 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -37.87 5.12 -322.94 -1.65 -39.52 16 10 C 0.17 6.74 2.77 44.99 0.12 6.86 16 11 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 12 C -0.12 -4.57 5.50 30.59 0.17 -4.40 16 13 C -0.11 -3.40 5.49 30.60 0.17 -3.23 16 14 C 0.15 4.01 2.45 44.99 0.11 4.12 16 15 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 16 N -0.69 -16.21 5.07 -445.51 -2.26 -18.47 16 17 C 0.60 16.87 7.79 86.75 0.68 17.55 16 18 O -0.56 -19.69 16.56 -3.93 -0.07 -19.76 16 19 C 0.04 1.07 7.09 42.31 0.30 1.36 16 20 C -0.24 -5.70 10.60 22.45 0.24 -5.46 16 21 C 0.24 4.48 8.32 83.60 0.70 5.18 16 22 N -0.41 -6.60 5.01 -453.36 -2.27 -8.87 16 23 N -0.23 -4.88 12.39 -48.51 -0.60 -5.48 16 24 C 0.09 0.30 8.10 86.76 0.70 1.01 16 25 C 0.04 0.05 8.08 72.54 0.59 0.63 16 26 O -0.29 -3.80 11.19 -94.88 -1.06 -4.86 16 27 C -0.11 -2.46 5.39 30.58 0.16 -2.30 16 28 C -0.11 -3.53 5.39 30.58 0.16 -3.37 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 20.52 7.80 -92.71 -0.72 19.80 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.42 7.71 8.30 -92.71 -0.77 6.94 16 36 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.17 -1.09 8.14 -2.39 -0.02 -1.11 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -78.67 365.33 -0.66 -79.33 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.46 Total: 27.60 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.40 Total: 1.28 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -6.50 Total: -132.67 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.13 Total: -24.62 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -78.67 -0.66 -79.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034664401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.446 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds