Wall clock time and date at job start Tue Mar 31 2020 12:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48493 * 109.47087 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.47125 * 29.99871 * 3 2 1 6 6 H 1.48500 * 109.46856 * 149.99706 * 3 2 1 7 7 C 1.38810 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99516 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47231 * 34.99749 * 10 9 7 12 12 C 1.52995 * 109.46988 * 155.00028 * 10 9 7 13 13 C 1.53002 * 109.47274 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46669 * 299.99653 * 13 12 10 15 15 H 1.08995 * 109.47449 * 300.00278 * 14 13 12 16 16 N 1.46500 * 109.47039 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00122 * 155.00496 * 16 14 13 18 18 O 1.21617 * 119.99850 * 359.97438 * 17 16 14 19 19 C 1.47294 * 120.00330 * 180.02562 * 17 16 14 20 20 C 1.37924 * 125.90197 * 180.02562 * 19 17 16 21 21 C 1.39446 * 107.46220 * 179.97438 * 20 19 17 22 22 C 1.37928 * 107.45844 * 359.97438 * 21 20 19 23 23 C 1.47296 * 125.89726 * 180.02562 * 22 21 20 24 24 N 1.34775 * 120.00041 * 179.97438 * 23 22 21 25 25 O 1.21613 * 120.00163 * 0.02562 * 23 22 21 26 26 N 1.36753 * 108.20312 * 0.02562 * 22 21 20 27 27 H 0.97005 * 125.65894 * 180.25855 * 26 22 21 28 28 C 1.53004 * 109.47027 * 60.00303 * 14 13 12 29 29 C 1.52996 * 109.46751 * 299.99690 * 28 14 13 30 30 H 0.97005 * 119.99651 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99856 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47362 * 59.99801 * 12 10 9 33 33 H 1.09001 * 109.47003 * 299.99773 * 12 10 9 34 34 H 1.08993 * 109.47330 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47315 * 59.99494 * 13 12 10 36 36 H 0.97000 * 119.99901 * 335.00134 * 16 14 13 37 37 H 1.08005 * 126.27085 * 359.97438 * 20 19 17 38 38 H 1.08007 * 126.26674 * 180.02562 * 21 20 19 39 39 H 0.96994 * 120.00313 * 0.02562 * 24 23 22 40 40 H 0.96998 * 120.00074 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47450 * 59.99857 * 28 14 13 42 42 H 1.09001 * 109.47041 * 179.97438 * 28 14 13 43 43 H 1.08995 * 109.47377 * 299.99811 * 29 28 14 44 44 H 1.09005 * 109.47040 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5899 12 6 1.1808 -4.7521 0.6101 13 6 1.9460 -6.0770 0.6108 14 6 2.3103 -6.4561 -0.8261 15 1 1.3998 -6.5626 -1.4158 16 7 3.0435 -7.7244 -0.8256 17 6 3.0354 -8.5080 -1.9221 18 8 2.4190 -8.1624 -2.9119 19 6 3.7721 -9.7835 -1.9214 20 6 3.8466 -10.6750 -2.9711 21 6 4.6390 -11.7448 -2.5561 22 6 5.0353 -11.4879 -1.2602 23 6 5.8869 -12.3562 -0.4293 24 7 6.2025 -11.9869 0.8278 25 8 6.3060 -13.4060 -0.8779 26 7 4.5011 -10.2878 -0.8801 27 1 4.6228 -9.8628 -0.0166 28 6 3.1876 -5.3608 -1.4358 29 6 2.4224 -4.0359 -1.4363 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.2701 -4.8583 0.0207 33 1 0.9216 -4.4822 1.6339 34 1 1.3209 -6.8574 1.0446 35 1 2.8565 -5.9705 1.2004 36 1 3.5348 -8.0002 -0.0360 37 1 3.3772 -10.5648 -3.9376 38 1 4.8961 -12.6147 -3.1425 39 1 5.8686 -11.1494 1.1856 40 1 6.7629 -12.5589 1.3752 41 1 4.0981 -5.2543 -0.8461 42 1 3.4475 -5.6311 -2.4592 43 1 1.5119 -4.1424 -2.0259 44 1 3.0472 -3.2556 -1.8710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034736877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:14 Heat of formation + Delta-G solvation = -34.698539 kcal Electronic energy + Delta-G solvation = -26044.697053 eV Core-core repulsion = 22189.994958 eV Total energy + Delta-G solvation = -3854.702095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98728 -40.00874 -39.19962 -37.92764 -35.05516 -34.40924 -33.22875 -31.61908 -30.86736 -30.50511 -29.88190 -27.44696 -24.72230 -23.56929 -22.52253 -22.06066 -21.21979 -20.69064 -20.44984 -19.88835 -19.19601 -17.75902 -17.30925 -16.99615 -16.33235 -15.87299 -15.38213 -15.12675 -14.97529 -14.52389 -14.37325 -14.15401 -13.88172 -13.78297 -13.57083 -13.19785 -13.10932 -13.04396 -12.61118 -12.12788 -11.90451 -11.54306 -11.15103 -10.93145 -10.86338 -10.84374 -10.73921 -10.39317 -10.30530 -10.20687 -10.17911 -9.84494 -9.64039 -9.58118 -9.22099 -8.89249 -8.77298 -6.97637 -5.78467 -3.07232 0.56233 1.77421 2.28246 2.78484 2.82754 2.83364 3.03510 3.41651 3.46695 3.48343 4.26559 4.34704 4.56600 4.72839 4.79306 4.85523 4.92836 5.16051 5.42105 5.45533 5.50006 5.59196 5.62507 5.68332 5.74103 5.78261 5.90306 5.98120 6.10100 6.12416 6.14624 6.20841 6.32053 6.38007 6.47929 6.51448 6.56621 6.66082 6.73401 6.92689 7.09589 7.18645 7.57486 7.67816 7.86709 8.40295 9.51299 10.09458 10.43778 11.44177 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.002100 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.103681 B =13329.219060 C =13638.765480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.045 0.955 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.145 3.855 15 H 0.092 0.908 16 N -0.723 5.723 17 C 0.583 3.417 18 O -0.514 6.514 19 C -0.004 4.004 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.028 4.028 23 C 0.594 3.406 24 N -0.854 5.854 25 O -0.524 6.524 26 N -0.523 5.523 27 H 0.415 0.585 28 C -0.124 4.124 29 C -0.133 4.133 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.390 0.610 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.397 0.603 40 H 0.410 0.590 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 -24.342 2.840 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.063 0.937 12 C -0.160 4.160 13 C -0.157 4.157 14 C 0.042 3.958 15 H 0.110 0.890 16 N -0.373 5.373 17 C 0.368 3.632 18 O -0.388 6.388 19 C -0.122 4.122 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.145 4.145 23 C 0.379 3.621 24 N -0.418 5.418 25 O -0.399 6.399 26 N -0.122 5.122 27 H 0.253 0.747 28 C -0.163 4.163 29 C -0.174 4.174 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.224 0.776 40 H 0.242 0.758 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.953 -24.488 1.840 26.498 hybrid contribution 0.582 1.286 1.240 1.879 sum 10.535 -23.202 3.079 25.667 Atomic orbital electron populations 1.69662 1.05089 1.25636 1.57712 1.24748 0.95520 0.97691 1.03088 0.86209 0.78613 0.83948 0.77535 1.21725 1.21801 1.20824 1.19225 0.90940 0.84141 1.42613 0.91251 1.42424 1.05800 0.99772 1.88565 1.20232 0.94256 0.86014 0.92767 0.93653 1.21756 0.98993 0.93306 1.01902 1.21759 1.00833 0.98498 0.94629 1.21212 0.95539 0.81184 0.97844 0.88965 1.46089 1.53450 1.22407 1.15403 1.17180 0.80463 0.81838 0.83705 1.90879 1.42677 1.72428 1.32850 1.20794 1.03421 0.97822 0.90121 1.21362 1.01530 0.93056 0.98958 1.21344 0.99551 1.00210 0.92960 1.20476 1.06949 0.89497 0.97547 1.17162 0.79102 0.84741 0.81083 1.43725 1.56028 1.26634 1.15404 1.90897 1.53449 1.23320 1.72232 1.41921 1.39116 1.17060 1.14085 0.74675 1.21907 0.98500 0.95380 1.00545 1.22236 0.99850 0.94398 1.00889 0.93520 0.78277 0.91827 0.91275 0.91837 0.91615 0.77708 0.82356 0.82489 0.77579 0.75781 0.92333 0.92176 0.92362 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.60 5.12 -53.43 -0.27 -17.88 16 10 C 0.18 3.28 2.77 -67.93 -0.19 3.09 16 11 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 12 C -0.12 -1.78 5.39 -26.73 -0.14 -1.93 16 13 C -0.12 -1.27 5.39 -26.73 -0.14 -1.42 16 14 C 0.15 1.70 2.46 -67.93 -0.17 1.53 16 15 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 16 N -0.72 -6.47 5.07 -54.92 -0.28 -6.75 16 17 C 0.58 6.50 7.77 -12.58 -0.10 6.41 16 18 O -0.51 -7.90 16.54 5.26 0.09 -7.81 16 19 C 0.00 -0.04 7.04 -82.10 -0.58 -0.61 16 20 C -0.12 -1.14 10.60 -39.25 -0.42 -1.56 16 21 C -0.11 -0.99 10.60 -39.25 -0.42 -1.40 16 22 C -0.03 -0.21 7.04 -82.10 -0.58 -0.79 16 23 C 0.59 4.57 8.08 -12.58 -0.10 4.47 16 24 N -0.85 -2.81 8.87 30.40 0.27 -2.54 16 25 O -0.52 -6.14 17.71 5.27 0.09 -6.05 16 26 N -0.52 -3.01 5.90 -5.89 -0.03 -3.05 16 27 H 0.42 0.89 7.34 -40.82 -0.30 0.59 16 28 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 29 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.38 9.95 7.80 -40.82 -0.32 9.64 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.39 2.08 7.70 -40.82 -0.31 1.77 16 37 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.40 0.15 7.93 -40.82 -0.32 -0.18 16 40 H 0.41 0.94 8.93 -40.82 -0.36 0.57 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -35.77 369.45 -8.45 -44.22 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.21 Total: 7.92 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.37 Total: -3.60 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.41 Total: -57.38 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.18 Total: -13.86 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.77 -8.45 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034736877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.517 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds