Wall clock time and date at job start Tue Mar 31 2020 12:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48493 * 109.47087 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.47125 * 29.99871 * 3 2 1 6 6 H 1.48500 * 109.46856 * 149.99706 * 3 2 1 7 7 C 1.38810 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99516 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47231 * 34.99749 * 10 9 7 12 12 C 1.52995 * 109.46988 * 155.00028 * 10 9 7 13 13 C 1.53002 * 109.47274 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46669 * 299.99653 * 13 12 10 15 15 H 1.08995 * 109.47449 * 300.00278 * 14 13 12 16 16 N 1.46500 * 109.47039 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00122 * 155.00496 * 16 14 13 18 18 O 1.21617 * 119.99850 * 359.97438 * 17 16 14 19 19 C 1.47294 * 120.00330 * 180.02562 * 17 16 14 20 20 C 1.37924 * 125.90197 * 180.02562 * 19 17 16 21 21 C 1.39446 * 107.46220 * 179.97438 * 20 19 17 22 22 C 1.37928 * 107.45844 * 359.97438 * 21 20 19 23 23 C 1.47296 * 125.89726 * 180.02562 * 22 21 20 24 24 N 1.34775 * 120.00041 * 179.97438 * 23 22 21 25 25 O 1.21613 * 120.00163 * 0.02562 * 23 22 21 26 26 N 1.36753 * 108.20312 * 0.02562 * 22 21 20 27 27 H 0.97005 * 125.65894 * 180.25855 * 26 22 21 28 28 C 1.53004 * 109.47027 * 60.00303 * 14 13 12 29 29 C 1.52996 * 109.46751 * 299.99690 * 28 14 13 30 30 H 0.97005 * 119.99651 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99856 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47362 * 59.99801 * 12 10 9 33 33 H 1.09001 * 109.47003 * 299.99773 * 12 10 9 34 34 H 1.08993 * 109.47330 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47315 * 59.99494 * 13 12 10 36 36 H 0.97000 * 119.99901 * 335.00134 * 16 14 13 37 37 H 1.08005 * 126.27085 * 359.97438 * 20 19 17 38 38 H 1.08007 * 126.26674 * 180.02562 * 21 20 19 39 39 H 0.96994 * 120.00313 * 0.02562 * 24 23 22 40 40 H 0.96998 * 120.00074 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47450 * 59.99857 * 28 14 13 42 42 H 1.09001 * 109.47041 * 179.97438 * 28 14 13 43 43 H 1.08995 * 109.47377 * 299.99811 * 29 28 14 44 44 H 1.09005 * 109.47040 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5899 12 6 1.1808 -4.7521 0.6101 13 6 1.9460 -6.0770 0.6108 14 6 2.3103 -6.4561 -0.8261 15 1 1.3998 -6.5626 -1.4158 16 7 3.0435 -7.7244 -0.8256 17 6 3.0354 -8.5080 -1.9221 18 8 2.4190 -8.1624 -2.9119 19 6 3.7721 -9.7835 -1.9214 20 6 3.8466 -10.6750 -2.9711 21 6 4.6390 -11.7448 -2.5561 22 6 5.0353 -11.4879 -1.2602 23 6 5.8869 -12.3562 -0.4293 24 7 6.2025 -11.9869 0.8278 25 8 6.3060 -13.4060 -0.8779 26 7 4.5011 -10.2878 -0.8801 27 1 4.6228 -9.8628 -0.0166 28 6 3.1876 -5.3608 -1.4358 29 6 2.4224 -4.0359 -1.4363 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.2701 -4.8583 0.0207 33 1 0.9216 -4.4822 1.6339 34 1 1.3209 -6.8574 1.0446 35 1 2.8565 -5.9705 1.2004 36 1 3.5348 -8.0002 -0.0360 37 1 3.3772 -10.5648 -3.9376 38 1 4.8961 -12.6147 -3.1425 39 1 5.8686 -11.1494 1.1856 40 1 6.7629 -12.5589 1.3752 41 1 4.0981 -5.2543 -0.8461 42 1 3.4475 -5.6311 -2.4592 43 1 1.5119 -4.1424 -2.0259 44 1 3.0472 -3.2556 -1.8710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034736877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:14 Heat of formation + Delta-G solvation = -64.032472 kcal Electronic energy + Delta-G solvation = -26045.969067 eV Core-core repulsion = 22189.994958 eV Total energy + Delta-G solvation = -3855.974109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64635 -40.90479 -39.92527 -39.09805 -36.43756 -34.93279 -34.74858 -32.70151 -32.06192 -31.68700 -30.77660 -28.84259 -25.89555 -25.00502 -23.66416 -23.01432 -22.14449 -21.49892 -21.27321 -20.88745 -20.08211 -19.07139 -18.30201 -17.82240 -17.32056 -16.85157 -16.58022 -16.12065 -15.91384 -15.59680 -15.37459 -15.16263 -15.10985 -14.97892 -14.82764 -14.34813 -14.08554 -13.78225 -13.75305 -13.45387 -13.16440 -13.08244 -12.82898 -12.46131 -12.32601 -12.13491 -12.02520 -11.71696 -11.58918 -11.46907 -11.24035 -11.16271 -10.85623 -10.83529 -10.21358 -10.17907 -9.44937 -8.98364 -7.92931 -5.20744 -0.11252 1.06117 1.47002 1.48756 1.56616 1.65593 1.98132 2.20274 2.24015 2.39973 2.57028 3.40090 3.62510 3.77268 3.85451 3.85660 3.90618 4.13711 4.21842 4.29091 4.37859 4.40317 4.53239 4.60609 4.65186 4.76177 4.84412 5.00963 5.04548 5.09990 5.14179 5.26453 5.28498 5.33069 5.40853 5.51979 5.56702 5.63559 5.65710 5.76368 6.06959 6.30088 6.33357 6.45890 7.06536 7.12851 7.35487 8.14030 8.35304 9.30696 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.002100 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.103681 B =13329.219060 C =13638.765480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.114 4.114 13 C -0.105 4.105 14 C 0.153 3.847 15 H 0.069 0.931 16 N -0.703 5.703 17 C 0.585 3.415 18 O -0.563 6.563 19 C -0.011 4.011 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.017 4.017 23 C 0.595 3.405 24 N -0.829 5.829 25 O -0.569 6.569 26 N -0.496 5.496 27 H 0.435 0.565 28 C -0.113 4.113 29 C -0.124 4.124 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.414 0.586 40 H 0.419 0.581 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.038 0.962 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.115 -25.708 5.036 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.153 4.153 13 C -0.143 4.143 14 C 0.049 3.951 15 H 0.087 0.913 16 N -0.354 5.354 17 C 0.373 3.627 18 O -0.440 6.440 19 C -0.130 4.130 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.135 4.135 23 C 0.380 3.620 24 N -0.393 5.393 25 O -0.448 6.448 26 N -0.097 5.097 27 H 0.277 0.723 28 C -0.152 4.152 29 C -0.165 4.165 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.250 0.750 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.245 0.755 40 H 0.253 0.747 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.034 -25.864 4.141 28.825 hybrid contribution 0.003 1.639 0.570 1.735 sum 12.037 -24.225 4.711 27.457 Atomic orbital electron populations 1.69820 1.06575 1.25860 1.59951 1.25547 0.96366 1.01052 1.04259 0.85192 0.77845 0.79832 0.77241 1.21870 1.22354 1.19196 1.19616 0.91382 0.85298 1.40291 0.90637 1.42691 1.05472 1.01199 1.88551 1.20512 0.94600 0.84989 0.93531 0.93253 1.21643 0.98408 0.94199 1.01068 1.21661 1.01930 0.96603 0.94094 1.20924 0.94454 0.81614 0.98150 0.91300 1.45751 1.52896 1.20968 1.15818 1.17378 0.79796 0.82283 0.83286 1.90866 1.44824 1.73605 1.34741 1.20359 1.04420 0.97128 0.91071 1.21452 1.01785 0.93550 0.99222 1.21456 1.00075 1.00379 0.93846 1.20475 1.06213 0.89640 0.97214 1.17146 0.78801 0.84028 0.82043 1.43530 1.54765 1.27213 1.13806 1.90887 1.55283 1.25188 1.73416 1.41709 1.37553 1.16150 1.14245 0.72292 1.21773 0.99008 0.93783 1.00655 1.22037 0.99025 0.95954 0.99494 0.94191 0.79748 0.92935 0.91367 0.89055 0.88947 0.75003 0.82863 0.82317 0.75494 0.74738 0.90264 0.93284 0.94300 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.23 -12.75 9.93 84.03 0.83 -11.92 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -36.37 5.12 -322.95 -1.65 -38.03 16 10 C 0.17 6.23 2.77 44.99 0.12 6.36 16 11 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 12 C -0.11 -3.20 5.39 30.59 0.16 -3.03 16 13 C -0.10 -1.85 5.39 30.60 0.16 -1.69 16 14 C 0.15 3.22 2.46 44.99 0.11 3.33 16 15 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 16 N -0.70 -10.33 5.07 -445.92 -2.26 -12.59 16 17 C 0.59 12.08 7.77 86.62 0.67 12.76 16 18 O -0.56 -17.25 16.54 -4.09 -0.07 -17.32 16 19 C -0.01 -0.18 7.04 40.68 0.29 0.10 16 20 C -0.13 -2.40 10.60 22.49 0.24 -2.17 16 21 C -0.13 -2.14 10.60 22.49 0.24 -1.91 16 22 C -0.02 -0.22 7.04 40.69 0.29 0.06 16 23 C 0.59 7.77 8.08 86.63 0.70 8.47 16 24 N -0.83 -2.57 8.87 -175.98 -1.56 -4.13 16 25 O -0.57 -12.69 17.71 -4.07 -0.07 -12.76 16 26 N -0.50 -4.11 5.90 -172.56 -1.02 -5.12 16 27 H 0.44 -0.18 7.34 -92.70 -0.68 -0.86 16 28 C -0.11 -2.90 5.49 30.59 0.17 -2.73 16 29 C -0.12 -4.30 5.50 30.59 0.17 -4.14 16 30 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 31 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 2.36 7.70 -92.71 -0.71 1.65 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.41 -1.56 7.93 -92.71 -0.74 -2.29 16 40 H 0.42 0.53 8.93 -92.71 -0.83 -0.30 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.55 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -81.06 369.45 -2.29 -83.35 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -2.59 Total: 18.42 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.63 Total: -0.62 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -6.21 Total: -119.01 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.14 Total: -30.08 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -81.06 -2.29 -83.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034736877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.318 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds