Wall clock time and date at job start Tue Mar 31 2020 12:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47086 * 325.00679 * 10 9 7 12 12 C 1.53006 * 109.46833 * 84.99984 * 10 9 7 13 13 C 1.53000 * 109.46890 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47222 * 300.00111 * 13 12 10 15 15 H 1.08997 * 109.46784 * 300.00168 * 14 13 12 16 16 N 1.46499 * 109.46824 * 180.02562 * 14 13 12 17 17 C 1.34776 * 120.00358 * 85.00438 * 16 14 13 18 18 O 1.21676 * 119.99626 * 359.97438 * 17 16 14 19 19 C 1.46808 * 120.00103 * 179.97438 * 17 16 14 20 20 C 1.36356 * 125.84882 * 179.71799 * 19 17 16 21 21 C 1.41301 * 107.01153 * 179.85013 * 20 19 17 22 22 C 1.47393 * 126.46478 * 180.13516 * 21 20 19 23 23 N 1.34780 * 120.00243 * 180.29938 * 22 21 20 24 24 O 1.21612 * 119.99866 * 0.29832 * 22 21 20 25 25 C 1.38210 * 107.07480 * 0.40174 * 21 20 19 26 26 N 1.34257 * 108.39469 * 359.75480 * 25 21 20 27 27 H 0.97004 * 125.39426 * 180.02562 * 26 25 21 28 28 C 1.52995 * 109.46864 * 60.00371 * 14 13 12 29 29 C 1.52995 * 109.47224 * 205.00255 * 10 9 7 30 30 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47275 * 300.00548 * 12 10 9 33 33 H 1.08997 * 109.46716 * 60.00469 * 12 10 9 34 34 H 1.09000 * 109.47107 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47010 * 60.00192 * 13 12 10 36 36 H 0.97006 * 119.99927 * 264.99693 * 16 14 13 37 37 H 1.07998 * 126.49360 * 359.97438 * 20 19 17 38 38 H 0.96997 * 119.99886 * 359.97438 * 23 22 21 39 39 H 0.96998 * 120.00058 * 180.02562 * 23 22 21 40 40 H 1.08000 * 125.80519 * 179.76606 * 25 21 20 41 41 H 1.09003 * 109.47025 * 180.02562 * 28 14 13 42 42 H 1.09002 * 109.47544 * 59.99812 * 28 14 13 43 43 H 1.09002 * 109.47109 * 299.99895 * 29 10 9 44 44 H 1.08996 * 109.47160 * 60.00521 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 2.9684 -3.5507 -0.5885 12 6 2.4231 -4.0348 1.4386 13 6 3.1887 -5.3595 1.4385 14 6 2.3116 -6.4555 0.8298 15 1 1.4014 -6.5619 1.4199 16 7 3.0445 -7.7240 0.8304 17 6 3.0363 -8.5066 1.9276 18 8 2.4205 -8.1593 2.9179 19 6 3.7703 -9.7780 1.9279 20 6 3.8471 -10.6555 2.9688 21 6 4.6460 -11.7386 2.5383 22 6 5.0038 -12.9311 3.3272 23 7 5.7834 -13.8881 2.7862 24 8 4.5955 -13.0515 4.4664 25 6 5.0336 -11.4661 1.2400 26 7 4.5043 -10.2864 0.8786 27 1 4.6199 -9.8596 0.0152 28 6 1.9468 -6.0774 -0.6070 29 6 1.1806 -4.7523 -0.6069 30 1 -0.4849 -0.8401 0.0004 31 1 0.3557 -2.3881 0.0016 32 1 3.0483 -3.2542 1.8721 33 1 1.5129 -4.1409 2.0287 34 1 3.4483 -5.6292 2.4622 35 1 4.0990 -5.2531 0.8485 36 1 3.5356 -8.0007 0.0410 37 1 3.3835 -10.5447 3.9379 38 1 6.1088 -13.7923 1.8774 39 1 6.0186 -14.6731 3.3053 40 1 5.6563 -12.0952 0.6212 41 1 1.3215 -6.8579 -1.0406 42 1 2.8570 -5.9709 -1.1971 43 1 0.2703 -4.8584 -0.0167 44 1 0.9207 -4.4830 -1.6306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034763689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:20 Heat of formation + Delta-G solvation = -35.605032 kcal Electronic energy + Delta-G solvation = -25933.668084 eV Core-core repulsion = 22078.926681 eV Total energy + Delta-G solvation = -3854.741403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.02889 -39.88957 -39.09356 -37.95743 -35.13716 -34.06682 -33.40046 -31.73635 -30.83909 -30.53466 -29.69840 -27.18750 -24.06995 -23.65763 -23.02882 -22.37650 -21.15339 -20.62778 -20.10423 -19.82986 -19.09130 -17.41862 -17.21131 -16.73217 -16.29706 -16.16286 -15.71747 -15.28244 -14.87212 -14.39891 -14.12534 -14.05919 -13.98724 -13.83040 -13.69179 -13.59392 -13.43758 -12.83675 -12.62097 -12.22593 -11.92372 -11.42931 -11.20716 -10.87665 -10.74059 -10.51564 -10.46132 -10.27684 -10.15545 -10.07232 -10.00867 -10.00209 -9.59594 -9.24462 -9.12393 -8.87668 -8.81816 -7.02518 -6.09694 -3.09434 0.98159 1.43196 2.42136 2.80340 2.97230 3.24407 3.26401 3.51336 3.58192 3.67254 4.25937 4.38882 4.50281 4.66088 4.72157 4.82047 4.91024 5.11852 5.33809 5.45683 5.47592 5.53515 5.56427 5.61723 5.72492 5.74722 5.87631 5.97377 6.07032 6.11022 6.16375 6.23217 6.34165 6.40742 6.42628 6.48811 6.61247 6.66534 6.88262 6.98403 7.04506 7.23607 7.82371 7.93591 7.96877 8.76444 9.23914 10.10198 10.25261 11.38965 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037719 B = 0.001967 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.151208 B =14234.682629 C =14352.353041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.737 5.737 10 C 0.183 3.817 11 H 0.047 0.953 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.146 3.854 15 H 0.091 0.909 16 N -0.725 5.725 17 C 0.586 3.414 18 O -0.519 6.519 19 C -0.055 4.055 20 C -0.045 4.045 21 C -0.238 4.238 22 C 0.593 3.407 23 N -0.856 5.856 24 O -0.543 6.543 25 C 0.071 3.929 26 N -0.523 5.523 27 H 0.422 0.578 28 C -0.118 4.118 29 C -0.122 4.122 30 H 0.256 0.744 31 H 0.366 0.634 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.390 0.610 37 H 0.160 0.840 38 H 0.397 0.603 39 H 0.404 0.596 40 H 0.181 0.819 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.284 -28.371 -3.774 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.916 3.084 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.379 5.379 10 C 0.073 3.927 11 H 0.065 0.935 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.043 3.957 15 H 0.109 0.891 16 N -0.375 5.375 17 C 0.372 3.628 18 O -0.393 6.393 19 C -0.166 4.166 20 C -0.070 4.070 21 C -0.248 4.248 22 C 0.380 3.620 23 N -0.419 5.419 24 O -0.420 6.420 25 C -0.071 4.071 26 N -0.118 5.118 27 H 0.260 0.740 28 C -0.156 4.156 29 C -0.161 4.161 30 H 0.067 0.933 31 H 0.199 0.801 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.177 0.823 38 H 0.225 0.775 39 H 0.235 0.765 40 H 0.198 0.802 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.506 -26.167 -2.454 29.105 hybrid contribution 0.641 -1.980 -1.117 2.362 sum 13.147 -28.147 -3.572 31.271 Atomic orbital electron populations 1.70813 1.06054 1.28497 1.53730 1.25755 0.97082 1.00991 1.00580 0.83161 0.73520 0.75132 0.76608 1.22173 1.22062 1.22017 1.20094 0.91987 0.85786 1.48195 0.91742 1.42444 1.04794 1.00792 1.89849 1.20173 0.94180 0.85483 0.92893 0.93538 1.22209 0.99823 0.94556 1.00691 1.21901 0.98494 0.95263 1.00642 1.21165 0.95544 0.81359 0.97647 0.89084 1.46047 1.53646 1.22358 1.15476 1.17034 0.80324 0.81844 0.83589 1.90896 1.42980 1.72556 1.32914 1.20248 1.07060 0.99023 0.90273 1.21133 0.96738 0.90714 0.98440 1.19600 1.10718 0.99251 0.95242 1.17397 0.77216 0.81767 0.85606 1.43676 1.54732 1.24384 1.19152 1.90848 1.54086 1.78676 1.18372 1.22388 1.00078 0.88466 0.96173 1.41756 1.38339 1.17375 1.14326 0.74022 1.21752 1.00801 0.98306 0.94788 1.21780 0.98977 0.93558 1.01748 0.93302 0.80058 0.91658 0.92524 0.92097 0.92315 0.77704 0.82258 0.77459 0.76543 0.80196 0.91803 0.91581 0.91968 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.33 13.70 55.49 0.76 -28.57 16 2 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 3 Si 1.08 26.13 29.92 -169.99 -5.09 21.04 16 4 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.33 -9.21 9.93 -15.06 -0.15 -9.36 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.22 5.12 -53.43 -0.27 -18.50 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.38 5.50 -26.73 -0.15 -2.53 16 13 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 14 C 0.15 1.82 2.45 -67.93 -0.17 1.65 16 15 H 0.09 1.34 7.57 -51.93 -0.39 0.94 16 16 N -0.73 -7.00 5.07 -55.08 -0.28 -7.28 16 17 C 0.59 7.06 7.76 -12.80 -0.10 6.96 16 18 O -0.52 -8.61 16.52 5.21 0.09 -8.53 16 19 C -0.06 -0.52 6.99 -82.41 -0.58 -1.10 16 20 C -0.04 -0.49 10.37 -39.10 -0.41 -0.89 16 21 C -0.24 -1.97 6.13 -105.02 -0.64 -2.62 16 22 C 0.59 5.46 8.09 -12.53 -0.10 5.35 16 23 N -0.86 -3.49 8.86 30.43 0.27 -3.22 16 24 O -0.54 -7.67 17.76 5.27 0.09 -7.57 16 25 C 0.07 0.29 11.43 -16.50 -0.19 0.10 16 26 N -0.52 -2.47 5.91 -9.30 -0.05 -2.52 16 27 H 0.42 0.57 8.14 -40.82 -0.33 0.24 16 28 C -0.12 -1.34 5.39 -26.70 -0.14 -1.48 16 29 C -0.12 -1.86 5.40 -26.70 -0.14 -2.01 16 30 H 0.26 7.80 6.77 -40.82 -0.28 7.53 16 31 H 0.37 9.39 6.63 -40.82 -0.27 9.12 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.39 2.31 7.68 -40.82 -0.31 2.00 16 37 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.40 0.19 7.74 -40.82 -0.32 -0.13 16 39 H 0.40 1.31 8.93 -40.82 -0.36 0.94 16 40 H 0.18 -0.14 7.44 -52.49 -0.39 -0.53 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -39.26 367.38 -8.23 -47.49 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.09 Total: 8.09 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.20 Total: -5.97 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.42 Total: -60.09 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.18 Total: -16.10 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.09 Total: 21.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.26 -8.23 -47.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034763689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.890 kcal (2) G-P(sol) polarization free energy of solvation -39.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds