Wall clock time and date at job start Tue Mar 31 2020 12:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47086 * 325.00679 * 10 9 7 12 12 C 1.53006 * 109.46833 * 84.99984 * 10 9 7 13 13 C 1.53000 * 109.46890 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47222 * 300.00111 * 13 12 10 15 15 H 1.08997 * 109.46784 * 300.00168 * 14 13 12 16 16 N 1.46499 * 109.46824 * 180.02562 * 14 13 12 17 17 C 1.34776 * 120.00358 * 85.00438 * 16 14 13 18 18 O 1.21676 * 119.99626 * 359.97438 * 17 16 14 19 19 C 1.46808 * 120.00103 * 179.97438 * 17 16 14 20 20 C 1.36356 * 125.84882 * 179.71799 * 19 17 16 21 21 C 1.41301 * 107.01153 * 179.85013 * 20 19 17 22 22 C 1.47393 * 126.46478 * 180.13516 * 21 20 19 23 23 N 1.34780 * 120.00243 * 180.29938 * 22 21 20 24 24 O 1.21612 * 119.99866 * 0.29832 * 22 21 20 25 25 C 1.38210 * 107.07480 * 0.40174 * 21 20 19 26 26 N 1.34257 * 108.39469 * 359.75480 * 25 21 20 27 27 H 0.97004 * 125.39426 * 180.02562 * 26 25 21 28 28 C 1.52995 * 109.46864 * 60.00371 * 14 13 12 29 29 C 1.52995 * 109.47224 * 205.00255 * 10 9 7 30 30 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47275 * 300.00548 * 12 10 9 33 33 H 1.08997 * 109.46716 * 60.00469 * 12 10 9 34 34 H 1.09000 * 109.47107 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47010 * 60.00192 * 13 12 10 36 36 H 0.97006 * 119.99927 * 264.99693 * 16 14 13 37 37 H 1.07998 * 126.49360 * 359.97438 * 20 19 17 38 38 H 0.96997 * 119.99886 * 359.97438 * 23 22 21 39 39 H 0.96998 * 120.00058 * 180.02562 * 23 22 21 40 40 H 1.08000 * 125.80519 * 179.76606 * 25 21 20 41 41 H 1.09003 * 109.47025 * 180.02562 * 28 14 13 42 42 H 1.09002 * 109.47544 * 59.99812 * 28 14 13 43 43 H 1.09002 * 109.47109 * 299.99895 * 29 10 9 44 44 H 1.08996 * 109.47160 * 60.00521 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 2.9684 -3.5507 -0.5885 12 6 2.4231 -4.0348 1.4386 13 6 3.1887 -5.3595 1.4385 14 6 2.3116 -6.4555 0.8298 15 1 1.4014 -6.5619 1.4199 16 7 3.0445 -7.7240 0.8304 17 6 3.0363 -8.5066 1.9276 18 8 2.4205 -8.1593 2.9179 19 6 3.7703 -9.7780 1.9279 20 6 3.8471 -10.6555 2.9688 21 6 4.6460 -11.7386 2.5383 22 6 5.0038 -12.9311 3.3272 23 7 5.7834 -13.8881 2.7862 24 8 4.5955 -13.0515 4.4664 25 6 5.0336 -11.4661 1.2400 26 7 4.5043 -10.2864 0.8786 27 1 4.6199 -9.8596 0.0152 28 6 1.9468 -6.0774 -0.6070 29 6 1.1806 -4.7523 -0.6069 30 1 -0.4849 -0.8401 0.0004 31 1 0.3557 -2.3881 0.0016 32 1 3.0483 -3.2542 1.8721 33 1 1.5129 -4.1409 2.0287 34 1 3.4483 -5.6292 2.4622 35 1 4.0990 -5.2531 0.8485 36 1 3.5356 -8.0007 0.0410 37 1 3.3835 -10.5447 3.9379 38 1 6.1088 -13.7923 1.8774 39 1 6.0186 -14.6731 3.3053 40 1 5.6563 -12.0952 0.6212 41 1 1.3215 -6.8579 -1.0406 42 1 2.8570 -5.9709 -1.1971 43 1 0.2703 -4.8584 -0.0167 44 1 0.9207 -4.4830 -1.6306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034763689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:20 Heat of formation + Delta-G solvation = -69.371083 kcal Electronic energy + Delta-G solvation = -25935.132290 eV Core-core repulsion = 22078.926681 eV Total energy + Delta-G solvation = -3856.205609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64556 -40.87931 -39.84446 -39.20200 -36.66822 -34.96087 -34.64393 -32.60080 -32.18321 -31.78667 -30.60160 -28.63922 -25.67655 -24.53633 -24.10084 -23.60912 -22.36809 -21.41445 -21.12832 -20.57356 -20.00892 -19.28450 -17.94373 -17.41788 -17.27655 -17.09972 -16.59835 -16.48311 -15.96010 -15.74315 -15.41760 -15.29875 -15.12958 -15.04662 -14.70276 -14.50106 -14.45500 -14.01995 -13.56386 -13.40736 -13.18027 -13.03948 -12.75622 -12.42206 -12.26391 -12.11000 -11.86357 -11.56646 -11.53510 -11.34758 -11.20308 -11.09266 -10.86941 -10.63736 -10.27208 -10.17079 -9.42100 -9.11083 -8.38708 -5.32100 0.35742 0.76106 1.56964 1.68725 1.79887 1.86443 2.03160 2.14866 2.55947 2.70836 2.77328 3.39907 3.60586 3.68034 3.78022 3.80736 3.88416 4.07450 4.17430 4.25785 4.27209 4.28400 4.43504 4.49984 4.54766 4.73248 4.79922 4.87763 4.88687 5.01815 5.05125 5.15291 5.17896 5.31511 5.35141 5.43179 5.51980 5.54125 5.62331 5.98209 6.31555 6.47946 6.50195 6.62041 7.08163 7.11128 7.46652 8.01618 8.13038 9.13554 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037719 B = 0.001967 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.151208 B =14234.682629 C =14352.353041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.109 4.109 3 Si 1.131 2.869 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.325 4.325 8 H 0.066 0.934 9 N -0.752 5.752 10 C 0.177 3.823 11 H 0.048 0.952 12 C -0.123 4.123 13 C -0.112 4.112 14 C 0.153 3.847 15 H 0.064 0.936 16 N -0.703 5.703 17 C 0.585 3.415 18 O -0.577 6.577 19 C -0.068 4.068 20 C -0.074 4.074 21 C -0.271 4.271 22 C 0.588 3.412 23 N -0.828 5.828 24 O -0.609 6.609 25 C 0.129 3.871 26 N -0.500 5.500 27 H 0.444 0.556 28 C -0.103 4.103 29 C -0.115 4.115 30 H 0.244 0.756 31 H 0.358 0.642 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.122 0.878 38 H 0.419 0.581 39 H 0.410 0.590 40 H 0.246 0.754 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.429 -30.725 -7.300 35.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.300 4.300 3 Si 0.956 3.044 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.456 4.456 8 H 0.084 0.916 9 N -0.393 5.393 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.164 4.164 13 C -0.151 4.151 14 C 0.049 3.951 15 H 0.082 0.918 16 N -0.354 5.354 17 C 0.373 3.627 18 O -0.456 6.456 19 C -0.179 4.179 20 C -0.101 4.101 21 C -0.280 4.280 22 C 0.376 3.624 23 N -0.392 5.392 24 O -0.492 6.492 25 C -0.016 4.016 26 N -0.097 5.097 27 H 0.286 0.714 28 C -0.141 4.141 29 C -0.154 4.154 30 H 0.054 0.946 31 H 0.189 0.811 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.140 0.860 38 H 0.251 0.749 39 H 0.242 0.758 40 H 0.262 0.738 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.739 -28.590 -6.101 33.201 hybrid contribution -0.260 -1.376 -0.031 1.401 sum 15.479 -29.966 -6.132 34.281 Atomic orbital electron populations 1.70930 1.07214 1.27900 1.56691 1.27171 0.97165 1.04709 1.00971 0.82571 0.73793 0.71600 0.76428 1.19541 1.21633 1.22205 1.20425 0.92261 0.87046 1.45893 0.91553 1.42713 1.04643 1.02048 1.89914 1.20445 0.94515 0.84634 0.93489 0.93378 1.22020 0.98924 0.96029 0.99443 1.21764 0.99060 0.93723 1.00584 1.20871 0.94347 0.81844 0.98052 0.91751 1.45681 1.53081 1.20826 1.15858 1.17383 0.79646 0.82584 0.83068 1.90871 1.45554 1.74020 1.35149 1.19584 1.08678 0.98010 0.91658 1.21062 0.98119 0.92970 0.97907 1.19586 1.12257 0.98800 0.97397 1.17642 0.77204 0.82655 0.84893 1.43413 1.52589 1.23107 1.20059 1.90816 1.56965 1.80135 1.21238 1.23222 0.96770 0.87259 0.94308 1.41672 1.36700 1.17275 1.14032 0.71376 1.21655 1.01942 0.96471 0.94053 1.21670 0.98365 0.94326 1.01017 0.94559 0.81074 0.94345 0.94520 0.93531 0.90167 0.74842 0.85969 0.74862 0.75798 0.73832 0.88906 0.88854 0.93004 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.24 13.70 21.65 0.30 -61.94 16 2 C -0.11 -6.43 5.50 84.86 0.47 -5.96 16 3 Si 1.13 52.76 29.92 68.60 2.05 54.81 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.32 -18.32 9.93 84.03 0.83 -17.49 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.75 -37.96 5.12 -322.94 -1.65 -39.62 16 10 C 0.18 6.77 2.77 44.99 0.12 6.89 16 11 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 12 C -0.12 -4.56 5.50 30.60 0.17 -4.39 16 13 C -0.11 -3.15 5.49 30.60 0.17 -2.98 16 14 C 0.15 3.58 2.45 44.99 0.11 3.69 16 15 H 0.06 1.91 7.57 -2.39 -0.02 1.89 16 16 N -0.70 -11.81 5.07 -446.39 -2.26 -14.07 16 17 C 0.58 13.85 7.76 86.48 0.67 14.52 16 18 O -0.58 -20.30 16.52 -4.27 -0.07 -20.37 16 19 C -0.07 -1.20 6.99 40.01 0.28 -0.92 16 20 C -0.07 -1.68 10.37 22.58 0.23 -1.44 16 21 C -0.27 -4.03 6.13 -20.12 -0.12 -4.15 16 22 C 0.59 10.33 8.09 86.65 0.70 11.03 16 23 N -0.83 -4.33 8.86 -175.90 -1.56 -5.89 16 24 O -0.61 -18.20 17.76 -4.07 -0.07 -18.27 16 25 C 0.13 0.36 11.43 84.32 0.96 1.32 16 26 N -0.50 -2.39 5.91 -183.35 -1.08 -3.47 16 27 H 0.44 -1.57 8.14 -92.71 -0.75 -2.32 16 28 C -0.10 -1.99 5.39 30.61 0.17 -1.82 16 29 C -0.11 -3.38 5.40 30.61 0.17 -3.21 16 30 H 0.24 15.47 6.77 -92.71 -0.63 14.84 16 31 H 0.36 19.03 6.63 -92.71 -0.61 18.41 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.41 2.94 7.68 -92.70 -0.71 2.23 16 37 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.42 -1.72 7.74 -92.71 -0.72 -2.44 16 39 H 0.41 1.70 8.93 -92.71 -0.83 0.87 16 40 H 0.25 -2.50 7.44 -2.91 -0.02 -2.52 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -95.45 367.38 -1.82 -97.27 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -2.39 Total: 16.45 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.93 Total: -4.91 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -6.26 Total: -124.99 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.14 Total: -38.64 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Total: -95.45 -1.82 -97.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034763689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.902 kcal (2) G-P(sol) polarization free energy of solvation -95.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds