Wall clock time and date at job start Tue Mar 31 2020 12:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38548 * 120.01724 * 2 1 4 4 C 1.40075 * 117.82085 * 179.97438 * 3 2 1 5 5 C 1.48131 * 121.14575 * 180.02562 * 4 3 2 6 6 O 1.21513 * 120.00190 * 174.16469 * 5 4 3 7 7 N 1.34780 * 120.00197 * 354.15885 * 5 4 3 8 8 C 1.46499 * 120.00289 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47511 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.51104 * 60.10040 * 9 8 7 11 11 C 1.53709 * 109.44671 * 180.38782 * 9 8 7 12 12 N 1.47152 * 108.16137 * 172.37249 * 11 9 8 13 13 C 1.36944 * 120.97988 * 129.43769 * 12 11 9 14 14 H 1.08000 * 119.99702 * 332.97996 * 13 12 11 15 15 C 1.38813 * 120.00048 * 152.97796 * 13 12 11 16 16 N 1.31619 * 119.99756 * 345.69393 * 15 13 12 17 17 Si 1.86793 * 119.99809 * 165.41828 * 15 13 12 18 18 H 1.48504 * 109.47473 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47272 * 120.00013 * 17 15 13 20 20 H 1.48500 * 109.47047 * 240.00009 * 17 15 13 21 21 C 1.47156 * 118.03940 * 309.16029 * 12 11 9 22 22 C 1.53298 * 108.37991 * 50.78757 * 21 12 11 23 23 O 1.42963 * 109.22129 * 307.69376 * 22 21 12 24 24 C 1.39768 * 117.70455 * 0.26989 * 4 3 2 25 25 C 1.50697 * 120.16745 * 179.70886 * 24 4 3 26 26 N 1.31897 * 119.65542 * 359.44687 * 24 4 3 27 27 N 1.28274 * 122.33088 * 0.58140 * 26 24 4 28 28 H 1.08997 * 109.47139 * 90.00028 * 1 2 3 29 29 H 1.09003 * 109.47059 * 209.99851 * 1 2 3 30 30 H 1.09000 * 109.47260 * 329.99838 * 1 2 3 31 31 H 1.08001 * 121.08655 * 359.96077 * 3 2 1 32 32 H 0.97002 * 119.99561 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.46914 * 60.00195 * 8 7 5 34 34 H 1.09004 * 109.47179 * 300.01007 * 8 7 5 35 35 H 1.09007 * 109.83381 * 52.69626 * 11 9 8 36 36 H 1.09001 * 109.74841 * 292.00530 * 11 9 8 37 37 H 0.97003 * 119.99529 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.68218 * 170.50625 * 21 12 11 39 39 H 1.09001 * 109.67992 * 291.02718 * 21 12 11 40 40 H 1.08994 * 109.51266 * 67.62192 * 22 21 12 41 41 H 1.08999 * 109.50666 * 187.72501 * 22 21 12 42 42 H 1.08998 * 109.47123 * 83.62332 * 25 24 4 43 43 H 1.09006 * 109.47190 * 203.62087 * 25 24 4 44 44 H 1.09001 * 109.47278 * 323.61679 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 0.0006 5 6 4.4140 2.3835 0.0012 6 8 5.6224 2.3156 0.1086 7 7 3.8144 3.5847 -0.1176 8 6 4.6196 4.8086 -0.1164 9 6 3.7012 6.0235 -0.2628 10 1 2.9993 6.0517 0.5706 11 6 4.5474 7.3066 -0.2713 12 7 3.6632 8.4370 -0.5964 13 6 3.6468 9.5651 0.1799 14 1 3.9123 9.5052 1.2250 15 6 3.2889 10.7854 -0.3766 16 7 3.2397 10.9230 -1.6846 17 14 2.8699 12.2299 0.7311 18 1 2.9937 11.8165 2.1520 19 1 3.8050 13.3507 0.4580 20 1 1.4773 12.6709 0.4639 21 6 2.8016 8.3221 -1.7838 22 6 2.0443 6.9916 -1.7046 23 8 2.9784 5.9302 -1.4928 24 6 4.2017 -0.1155 -0.0048 25 6 5.7037 -0.2379 -0.0111 26 7 3.4483 -1.1981 0.0010 27 7 2.1668 -1.1420 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6782 2.1452 -0.0006 32 1 2.8497 3.6389 -0.2031 33 1 5.3226 4.7818 -0.9490 34 1 5.1700 4.8805 0.8216 35 1 5.3327 7.2268 -1.0231 36 1 4.9934 7.4601 0.7114 37 1 2.9893 11.7757 -2.0734 38 1 2.0910 9.1483 -1.8032 39 1 3.4141 8.3434 -2.6852 40 1 1.3365 7.0243 -0.8764 41 1 1.5060 6.8231 -2.6373 42 1 6.0792 -0.1559 1.0089 43 1 5.9877 -1.2049 -0.4262 44 1 6.1306 0.5586 -0.6206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035379629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:00 Heat of formation + Delta-G solvation = 0.630693 kcal Electronic energy + Delta-G solvation = -26704.103477 eV Core-core repulsion = 22850.933373 eV Total energy + Delta-G solvation = -3853.170104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65783 -39.72934 -38.55034 -35.44183 -34.66554 -34.36619 -33.87520 -31.71439 -30.91148 -29.97403 -27.68844 -27.11120 -26.05170 -24.84484 -23.32113 -23.02291 -21.87714 -20.96184 -19.77177 -18.09440 -17.91915 -16.96310 -16.27295 -16.05096 -15.97438 -15.72994 -15.20942 -14.93938 -14.76918 -14.47656 -14.06664 -13.82823 -13.69310 -13.56977 -13.36141 -13.17555 -12.97959 -12.84396 -12.67994 -12.52051 -12.29236 -11.67894 -11.31035 -11.19343 -10.96864 -10.79853 -10.61208 -10.56834 -10.51295 -10.32238 -10.09610 -9.84666 -9.80772 -9.67124 -9.22941 -9.17279 -8.64462 -6.84667 -5.92658 -3.38735 -0.00297 0.50051 2.49898 2.78102 3.25724 3.27424 3.35567 3.37355 3.58719 3.89936 4.01417 4.09273 4.25402 4.34912 4.43239 4.74992 4.88977 4.99139 5.12453 5.14788 5.24834 5.31762 5.37259 5.40720 5.43941 5.50053 5.64545 5.68651 5.71968 5.81855 5.87655 6.00782 6.07490 6.17309 6.25505 6.30021 6.37703 6.63703 7.00941 7.21437 7.44185 7.61527 7.72397 7.88015 8.24884 8.34852 9.02641 9.64460 10.20793 11.15074 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.002566 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.313702 B =10907.519216 C =11551.571231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.057 3.943 3 C -0.080 4.080 4 C -0.127 4.127 5 C 0.559 3.441 6 O -0.521 6.521 7 N -0.707 5.707 8 C 0.130 3.870 9 C 0.063 3.937 10 H 0.060 0.940 11 C 0.122 3.878 12 N -0.594 5.594 13 C -0.256 4.256 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.904 5.904 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.139 3.861 22 C 0.039 3.961 23 O -0.391 6.391 24 C 0.117 3.883 25 C -0.105 4.105 26 N -0.243 5.243 27 N -0.226 5.226 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.403 0.597 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.255 0.745 38 H 0.097 0.903 39 H 0.028 0.972 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -18.506 2.753 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 C -0.110 4.110 4 C -0.141 4.141 5 C 0.344 3.656 6 O -0.398 6.398 7 N -0.358 5.358 8 C 0.006 3.994 9 C 0.003 3.997 10 H 0.078 0.922 11 C -0.005 4.005 12 N -0.318 5.318 13 C -0.385 4.385 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.737 3.263 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.215 1.215 21 C 0.013 3.987 22 C -0.038 4.038 23 O -0.311 6.311 24 C -0.027 4.027 25 C -0.163 4.163 26 N -0.085 5.085 27 N -0.069 5.069 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.450 -20.143 2.621 20.604 hybrid contribution -0.802 2.774 0.532 2.936 sum -4.252 -17.369 3.153 18.158 Atomic orbital electron populations 1.20709 0.86862 1.04360 1.03977 1.22872 0.99376 0.89877 0.96610 1.22583 0.93366 1.00572 0.94475 1.21148 0.94324 0.95794 1.02854 1.17843 0.87310 0.82821 0.77659 1.90759 1.13410 1.86446 1.49179 1.45846 1.11488 1.05586 1.72911 1.21554 0.93631 0.81065 1.03109 1.22914 0.94297 0.94943 0.87514 0.92223 1.21520 0.92252 0.87070 0.99703 1.44092 1.43017 1.14500 1.30192 1.19246 1.42996 0.85029 0.91248 0.91258 1.25095 1.01537 0.97359 0.95637 1.70010 1.51350 1.24466 1.08975 0.86151 0.77862 0.82352 0.79976 1.20189 1.21539 1.21457 1.21477 0.94238 0.93974 0.89017 1.23348 0.91097 0.89606 0.99778 1.87771 1.55811 1.48337 1.39157 1.23149 0.99780 0.88451 0.91355 1.20973 0.86303 1.04332 1.04673 1.73066 0.98915 1.26310 1.10176 1.72806 1.01867 1.24963 1.07239 0.89554 0.89714 0.89943 0.82733 0.76138 0.90172 0.89648 0.95104 0.91681 0.93460 0.88462 0.95364 0.94069 0.89979 0.89383 0.90610 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.19 36.00 0.37 -0.21 16 2 C 0.06 0.53 6.86 -82.45 -0.57 -0.03 16 3 C -0.08 -0.71 9.34 -38.78 -0.36 -1.08 16 4 C -0.13 -1.41 5.92 -104.57 -0.62 -2.03 16 5 C 0.56 6.91 7.73 -12.20 -0.09 6.82 16 6 O -0.52 -7.62 13.53 5.35 0.07 -7.54 16 7 N -0.71 -8.16 5.41 -61.16 -0.33 -8.49 16 8 C 0.13 1.72 5.37 -4.05 -0.02 1.70 16 9 C 0.06 1.00 2.88 -26.37 -0.08 0.92 16 10 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 11 C 0.12 2.37 6.05 -3.32 -0.02 2.35 16 12 N -0.59 -14.15 3.04 -171.56 -0.52 -14.67 16 13 C -0.26 -6.69 9.66 -15.06 -0.15 -6.83 16 14 H 0.07 1.77 7.87 -52.49 -0.41 1.35 16 15 C 0.00 0.06 5.01 -17.43 -0.09 -0.02 16 16 N -0.90 -25.19 11.01 55.49 0.61 -24.58 16 17 Si 0.91 20.78 29.58 -169.99 -5.03 15.76 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.14 3.14 5.43 -3.53 -0.02 3.12 16 22 C 0.04 0.70 6.98 37.31 0.26 0.96 16 23 O -0.39 -6.64 10.13 -35.23 -0.36 -7.00 16 24 C 0.12 1.40 6.91 -81.99 -0.57 0.83 16 25 C -0.10 -1.10 8.97 36.00 0.32 -0.77 16 26 N -0.24 -3.15 11.42 33.81 0.39 -2.77 16 27 N -0.23 -2.75 11.40 33.58 0.38 -2.37 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.16 0.92 6.65 -52.49 -0.35 0.57 16 32 H 0.40 3.92 6.57 -40.82 -0.27 3.65 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.10 2.44 6.09 -51.93 -0.32 2.12 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.20 5.94 -51.93 -0.31 0.89 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -31.53 361.21 -7.24 -38.78 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.27 Total: 1.73 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.63 Total: 5.71 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.53 Total: -52.88 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.28 Total: -14.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.53 -7.24 -38.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035379629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.408 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds