Wall clock time and date at job start Tue Mar 31 2020 12:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38548 * 120.01724 * 2 1 4 4 C 1.40075 * 117.82085 * 179.97438 * 3 2 1 5 5 C 1.48131 * 121.14575 * 180.02562 * 4 3 2 6 6 O 1.21513 * 120.00190 * 174.16469 * 5 4 3 7 7 N 1.34780 * 120.00197 * 354.15885 * 5 4 3 8 8 C 1.46499 * 120.00289 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47511 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.51104 * 60.10040 * 9 8 7 11 11 C 1.53709 * 109.44671 * 180.38782 * 9 8 7 12 12 N 1.47152 * 108.16137 * 172.37249 * 11 9 8 13 13 C 1.36944 * 120.97988 * 129.43769 * 12 11 9 14 14 H 1.08000 * 119.99702 * 332.97996 * 13 12 11 15 15 C 1.38813 * 120.00048 * 152.97796 * 13 12 11 16 16 N 1.31619 * 119.99756 * 345.69393 * 15 13 12 17 17 Si 1.86793 * 119.99809 * 165.41828 * 15 13 12 18 18 H 1.48504 * 109.47473 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47272 * 120.00013 * 17 15 13 20 20 H 1.48500 * 109.47047 * 240.00009 * 17 15 13 21 21 C 1.47156 * 118.03940 * 309.16029 * 12 11 9 22 22 C 1.53298 * 108.37991 * 50.78757 * 21 12 11 23 23 O 1.42963 * 109.22129 * 307.69376 * 22 21 12 24 24 C 1.39768 * 117.70455 * 0.26989 * 4 3 2 25 25 C 1.50697 * 120.16745 * 179.70886 * 24 4 3 26 26 N 1.31897 * 119.65542 * 359.44687 * 24 4 3 27 27 N 1.28274 * 122.33088 * 0.58140 * 26 24 4 28 28 H 1.08997 * 109.47139 * 90.00028 * 1 2 3 29 29 H 1.09003 * 109.47059 * 209.99851 * 1 2 3 30 30 H 1.09000 * 109.47260 * 329.99838 * 1 2 3 31 31 H 1.08001 * 121.08655 * 359.96077 * 3 2 1 32 32 H 0.97002 * 119.99561 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.46914 * 60.00195 * 8 7 5 34 34 H 1.09004 * 109.47179 * 300.01007 * 8 7 5 35 35 H 1.09007 * 109.83381 * 52.69626 * 11 9 8 36 36 H 1.09001 * 109.74841 * 292.00530 * 11 9 8 37 37 H 0.97003 * 119.99529 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.68218 * 170.50625 * 21 12 11 39 39 H 1.09001 * 109.67992 * 291.02718 * 21 12 11 40 40 H 1.08994 * 109.51266 * 67.62192 * 22 21 12 41 41 H 1.08999 * 109.50666 * 187.72501 * 22 21 12 42 42 H 1.08998 * 109.47123 * 83.62332 * 25 24 4 43 43 H 1.09006 * 109.47190 * 203.62087 * 25 24 4 44 44 H 1.09001 * 109.47278 * 323.61679 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 0.0006 5 6 4.4140 2.3835 0.0012 6 8 5.6224 2.3156 0.1086 7 7 3.8144 3.5847 -0.1176 8 6 4.6196 4.8086 -0.1164 9 6 3.7012 6.0235 -0.2628 10 1 2.9993 6.0517 0.5706 11 6 4.5474 7.3066 -0.2713 12 7 3.6632 8.4370 -0.5964 13 6 3.6468 9.5651 0.1799 14 1 3.9123 9.5052 1.2250 15 6 3.2889 10.7854 -0.3766 16 7 3.2397 10.9230 -1.6846 17 14 2.8699 12.2299 0.7311 18 1 2.9937 11.8165 2.1520 19 1 3.8050 13.3507 0.4580 20 1 1.4773 12.6709 0.4639 21 6 2.8016 8.3221 -1.7838 22 6 2.0443 6.9916 -1.7046 23 8 2.9784 5.9302 -1.4928 24 6 4.2017 -0.1155 -0.0048 25 6 5.7037 -0.2379 -0.0111 26 7 3.4483 -1.1981 0.0010 27 7 2.1668 -1.1420 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6782 2.1452 -0.0006 32 1 2.8497 3.6389 -0.2031 33 1 5.3226 4.7818 -0.9490 34 1 5.1700 4.8805 0.8216 35 1 5.3327 7.2268 -1.0231 36 1 4.9934 7.4601 0.7114 37 1 2.9893 11.7757 -2.0734 38 1 2.0910 9.1483 -1.8032 39 1 3.4141 8.3434 -2.6852 40 1 1.3365 7.0243 -0.8764 41 1 1.5060 6.8231 -2.6373 42 1 6.0792 -0.1559 1.0089 43 1 5.9877 -1.2049 -0.4262 44 1 6.1306 0.5586 -0.6206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035379629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:59 Heat of formation + Delta-G solvation = -21.632047 kcal Electronic energy + Delta-G solvation = -26705.068862 eV Core-core repulsion = 22850.933373 eV Total energy + Delta-G solvation = -3854.135489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48338 -40.77254 -39.92732 -36.65166 -36.05421 -35.33649 -34.73660 -33.35310 -32.39100 -30.80086 -29.22357 -27.87414 -27.39574 -25.87144 -24.94854 -24.00630 -23.14168 -21.99225 -21.28007 -19.09805 -18.80648 -18.68834 -17.51645 -17.08416 -16.85927 -16.78983 -16.68449 -16.14212 -15.95489 -15.74949 -15.48106 -15.04386 -14.91737 -14.58415 -14.43554 -14.33933 -14.29477 -13.74087 -13.47710 -13.30043 -13.21466 -13.02743 -12.97662 -12.72727 -12.48056 -12.15993 -12.09816 -12.05356 -11.88316 -11.52708 -11.38334 -11.32228 -10.79512 -10.62931 -10.57750 -10.53948 -10.19923 -8.74511 -7.90885 -5.40109 -0.81855 -0.25804 1.46171 1.48487 1.58268 1.58598 1.81244 2.42840 2.47421 2.76711 2.85171 3.14399 3.24887 3.27209 3.46709 3.53769 3.67002 3.97734 4.04466 4.07983 4.21805 4.25211 4.43597 4.49140 4.52649 4.63674 4.67823 4.73389 4.76445 4.77176 4.77769 4.82525 4.92042 5.05664 5.09206 5.15369 5.26204 5.28545 5.34825 5.57161 5.63314 6.25255 6.30518 6.34399 6.95533 7.06841 7.53988 7.74595 8.27318 9.14588 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.002566 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.313702 B =10907.519216 C =11551.571231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 C -0.064 4.064 4 C -0.139 4.139 5 C 0.563 3.437 6 O -0.547 6.547 7 N -0.698 5.698 8 C 0.141 3.859 9 C 0.078 3.922 10 H 0.074 0.926 11 C 0.115 3.885 12 N -0.614 5.614 13 C -0.263 4.263 14 H 0.074 0.926 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.295 1.295 20 H -0.288 1.288 21 C 0.141 3.859 22 C 0.055 3.945 23 O -0.389 6.389 24 C 0.105 3.895 25 C -0.100 4.100 26 N -0.269 5.269 27 N -0.254 5.254 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.190 0.810 32 H 0.415 0.585 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.069 0.931 39 H -0.004 1.004 40 H 0.054 0.946 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 -19.174 3.892 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 C -0.094 4.094 4 C -0.153 4.153 5 C 0.349 3.651 6 O -0.426 6.426 7 N -0.349 5.349 8 C 0.017 3.983 9 C 0.018 3.982 10 H 0.092 0.908 11 C -0.011 4.011 12 N -0.338 5.338 13 C -0.393 4.393 14 H 0.092 0.908 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.222 1.222 20 H -0.215 1.215 21 C 0.016 3.984 22 C -0.023 4.023 23 O -0.308 6.308 24 C -0.041 4.041 25 C -0.158 4.158 26 N -0.110 5.110 27 N -0.096 5.096 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.207 0.793 32 H 0.252 0.748 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.227 -20.862 3.774 21.835 hybrid contribution -0.243 2.967 0.166 2.981 sum -5.470 -17.895 3.940 19.123 Atomic orbital electron populations 1.20878 0.84078 1.05695 1.05160 1.23467 1.01071 0.89192 0.94926 1.22973 0.92369 1.01924 0.92141 1.21064 0.95322 0.94756 1.04168 1.17950 0.87024 0.83168 0.76977 1.90755 1.14667 1.86811 1.50378 1.45652 1.11931 1.04726 1.72635 1.21328 0.92950 0.80775 1.03291 1.22755 0.94015 0.93882 0.87526 0.90798 1.21698 0.92202 0.87573 0.99620 1.44376 1.44255 1.15092 1.30103 1.19596 1.41922 0.85965 0.91779 0.90841 1.25849 1.02161 0.99868 0.96771 1.70172 1.52855 1.24723 1.10581 0.85153 0.77071 0.79000 0.78883 1.18853 1.22234 1.21496 1.21345 0.93464 0.96061 0.87570 1.23154 0.90580 0.86776 1.01747 1.87790 1.55716 1.47478 1.39854 1.23309 1.00205 0.88831 0.91739 1.20912 0.85895 1.04347 1.04611 1.73013 0.99583 1.27001 1.11432 1.72730 1.01734 1.26736 1.08405 0.88247 0.89678 0.87353 0.79261 0.74778 0.91342 0.88522 0.96412 0.90834 0.93987 0.91308 0.98570 0.92758 0.87353 0.89198 0.89783 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.19 71.23 0.73 -0.07 16 2 C 0.06 0.95 6.86 42.62 0.29 1.24 16 3 C -0.06 -0.94 9.34 22.79 0.21 -0.73 16 4 C -0.14 -2.85 5.92 -19.83 -0.12 -2.97 16 5 C 0.56 12.88 7.73 86.87 0.67 13.55 16 6 O -0.55 -15.51 13.53 -3.76 -0.05 -15.57 16 7 N -0.70 -14.06 5.41 -465.70 -2.52 -16.58 16 8 C 0.14 3.40 5.37 86.38 0.46 3.86 16 9 C 0.08 2.25 2.88 30.83 0.09 2.34 16 10 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 11 C 0.12 4.38 6.05 86.49 0.52 4.90 16 12 N -0.61 -29.10 3.04 -696.70 -2.12 -31.22 16 13 C -0.26 -13.66 9.66 84.03 0.81 -12.85 16 14 H 0.07 3.68 7.87 -2.91 -0.02 3.65 16 15 C -0.05 -2.73 5.01 84.86 0.43 -2.31 16 16 N -0.94 -53.43 11.01 21.65 0.24 -53.19 16 17 Si 0.97 42.79 29.58 68.60 2.03 44.82 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 21 C 0.14 6.42 5.43 86.35 0.47 6.89 16 22 C 0.05 1.82 6.98 72.08 0.50 2.33 16 23 O -0.39 -12.14 10.13 -148.98 -1.51 -13.65 16 24 C 0.10 2.44 6.91 42.92 0.30 2.74 16 25 C -0.10 -2.09 8.97 71.24 0.64 -1.45 16 26 N -0.27 -6.89 11.42 -46.94 -0.54 -7.43 16 27 N -0.25 -5.91 11.40 -47.68 -0.54 -6.46 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.33 8.09 -2.39 -0.02 0.31 16 31 H 0.19 1.31 6.65 -2.91 -0.02 1.29 16 32 H 0.41 6.38 6.57 -92.71 -0.61 5.77 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 37 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.07 3.51 6.09 -2.39 -0.01 3.50 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.09 2.18 5.94 -2.39 -0.01 2.17 16 Total: -1.00 -69.78 361.21 1.41 -68.37 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.42 Total: 13.43 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 6.01 Total: 17.48 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -5.48 Total: -114.88 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.56 Total: -29.22 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.78 1.41 -68.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035379629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.738 kcal (2) G-P(sol) polarization free energy of solvation -69.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds