Wall clock time and date at job start Tue Mar 31 2020 12:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38805 * 120.42523 * 2 1 4 4 C 1.39493 * 118.26686 * 180.22901 * 3 2 1 5 5 C 1.48452 * 120.55587 * 179.72543 * 4 3 2 6 6 O 1.21476 * 119.99685 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00289 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99799 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46934 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.51544 * 305.00022 * 9 8 7 11 11 C 1.53294 * 109.51248 * 184.89489 * 9 8 7 12 12 N 1.47151 * 108.38434 * 187.77362 * 11 9 8 13 13 C 1.36935 * 120.98616 * 230.55781 * 12 11 9 14 14 H 1.07999 * 119.99923 * 26.24383 * 13 12 11 15 15 C 1.38811 * 120.00385 * 206.24448 * 13 12 11 16 16 N 1.31617 * 120.00113 * 16.90490 * 15 13 12 17 17 Si 1.86804 * 120.00122 * 196.90719 * 15 13 12 18 18 H 1.48496 * 109.47264 * 89.99872 * 17 15 13 19 19 H 1.48500 * 109.47097 * 209.99595 * 17 15 13 20 20 H 1.48503 * 109.46833 * 329.99864 * 17 15 13 21 21 C 1.47157 * 118.03395 * 50.54053 * 12 11 9 22 22 C 1.53297 * 108.38381 * 309.46068 * 21 12 11 23 23 O 1.42957 * 109.26226 * 52.27839 * 22 21 12 24 24 N 1.33111 * 118.89533 * 359.49266 * 4 3 2 25 25 C 1.31548 * 120.73541 * 0.51895 * 24 4 3 26 26 C 1.50705 * 119.03943 * 179.75439 * 25 24 4 27 27 N 1.31908 * 121.92304 * 359.73157 * 25 24 4 28 28 H 1.09003 * 109.46969 * 90.00149 * 1 2 3 29 29 H 1.08993 * 109.47329 * 209.99904 * 1 2 3 30 30 H 1.08999 * 109.47776 * 330.00594 * 1 2 3 31 31 H 1.08008 * 120.87195 * 359.94865 * 3 2 1 32 32 H 0.96998 * 119.99869 * 359.97438 * 7 5 4 33 33 H 1.08995 * 109.47232 * 299.99304 * 8 7 5 34 34 H 1.09003 * 109.47416 * 59.99791 * 8 7 5 35 35 H 1.08993 * 109.68316 * 307.49750 * 11 9 8 36 36 H 1.08997 * 109.68156 * 68.01706 * 11 9 8 37 37 H 0.97002 * 120.00206 * 180.02562 * 16 15 13 38 38 H 1.08991 * 109.68520 * 69.18817 * 21 12 11 39 39 H 1.09006 * 109.67930 * 189.69941 * 21 12 11 40 40 H 1.08999 * 109.51363 * 172.23125 * 22 21 12 41 41 H 1.09002 * 109.51029 * 292.37818 * 22 21 12 42 42 H 1.09000 * 109.46997 * 269.97877 * 26 25 24 43 43 H 1.09007 * 109.47141 * 29.97614 * 26 25 24 44 44 H 1.08998 * 109.47395 * 149.97792 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6038 1.1444 -0.0049 5 6 4.4061 2.3934 -0.0113 6 8 3.8491 3.4730 -0.0127 7 7 5.7523 2.3297 -0.0165 8 6 6.5440 3.5624 -0.0222 9 6 8.0333 3.2119 -0.0268 10 1 8.2558 2.5569 0.8155 11 6 8.8618 4.4963 0.0906 12 7 10.2795 4.1535 -0.1041 13 6 11.2336 4.5667 0.7871 14 1 10.9641 4.7627 1.8144 15 6 12.5470 4.7336 0.3702 16 7 12.8236 4.8243 -0.9133 17 14 13.9221 4.8296 1.6310 18 1 14.4427 3.4653 1.9005 19 1 15.0179 5.6823 1.1043 20 1 13.3989 5.4176 2.8903 21 6 10.6418 3.3530 -1.2846 22 6 9.7265 2.1243 -1.3349 23 8 8.3637 2.5475 -1.2487 24 7 4.2027 -0.0444 0.0009 25 6 3.4954 -1.1535 0.0009 26 6 4.2130 -2.4788 0.0020 27 7 2.1764 -1.1397 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6911 2.1443 -0.0008 32 1 6.1970 1.4676 -0.0157 33 1 6.3045 4.1438 -0.9125 34 1 6.3115 4.1477 0.8675 35 1 8.5477 5.2069 -0.6739 36 1 8.7219 4.9345 1.0787 37 1 13.7415 4.9406 -1.2047 38 1 10.5069 3.9485 -2.1874 39 1 11.6813 3.0342 -1.2070 40 1 9.8837 1.5914 -2.2727 41 1 9.9559 1.4649 -0.4978 42 1 4.3864 -2.7989 -1.0254 43 1 5.1685 -2.3742 0.5161 44 1 3.6033 -3.2217 0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035541139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:12 Heat of formation + Delta-G solvation = -10.966753 kcal Electronic energy + Delta-G solvation = -26432.494321 eV Core-core repulsion = 22578.821314 eV Total energy + Delta-G solvation = -3853.673007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.59211 -39.58153 -38.43731 -35.21446 -34.82383 -34.29845 -33.76191 -31.57145 -30.68067 -29.61336 -28.52766 -27.69224 -26.10283 -24.32403 -23.17547 -22.56333 -21.81790 -20.79763 -19.70364 -18.45926 -17.51916 -16.86413 -16.19451 -15.89139 -15.84613 -15.70376 -15.15865 -14.89646 -14.78430 -14.39022 -14.10713 -13.79981 -13.77212 -13.46477 -13.24614 -13.11117 -12.87321 -12.81563 -12.67630 -12.62179 -12.35430 -11.60183 -11.27022 -11.14657 -10.89085 -10.85081 -10.77043 -10.55982 -10.41544 -10.27452 -10.00715 -9.74292 -9.72406 -9.58539 -9.10375 -9.07413 -8.57037 -6.78870 -5.86898 -3.30883 0.22371 0.55998 2.56447 2.85008 3.32844 3.39783 3.41159 3.48100 3.49002 3.58694 4.14839 4.25339 4.40772 4.55987 4.56856 4.93994 5.05456 5.08062 5.09173 5.15945 5.24479 5.30324 5.40066 5.44231 5.46537 5.51494 5.62476 5.76264 5.78798 5.97936 6.02326 6.12790 6.23761 6.34635 6.38869 6.45928 6.55528 6.71909 7.07707 7.38512 7.49432 7.68226 7.69132 7.83186 8.01992 8.30476 9.08497 9.71098 10.27829 11.21180 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.002426 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.862230 B =11540.680320 C =12014.609482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.179 3.821 3 C -0.179 4.179 4 C 0.143 3.857 5 C 0.566 3.434 6 O -0.530 6.530 7 N -0.693 5.693 8 C 0.127 3.873 9 C 0.065 3.935 10 H 0.060 0.940 11 C 0.122 3.878 12 N -0.594 5.594 13 C -0.256 4.256 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.139 3.861 22 C 0.040 3.960 23 O -0.389 6.389 24 N -0.498 5.498 25 C 0.322 3.678 26 C -0.086 4.086 27 N -0.510 5.510 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.255 0.745 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 -12.652 1.315 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.202 4.202 4 C -0.005 4.005 5 C 0.349 3.651 6 O -0.406 6.406 7 N -0.343 5.343 8 C 0.004 3.996 9 C 0.005 3.995 10 H 0.078 0.922 11 C -0.005 4.005 12 N -0.318 5.318 13 C -0.385 4.385 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.013 3.987 22 C -0.038 4.038 23 O -0.308 6.308 24 N -0.216 5.216 25 C 0.054 3.946 26 C -0.144 4.144 27 N -0.226 5.226 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.178 0.822 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.675 -12.664 1.106 24.270 hybrid contribution 0.868 0.550 0.665 1.224 sum -19.807 -12.113 1.771 23.285 Atomic orbital electron populations 1.20812 0.87132 1.04389 1.04017 1.21839 0.97884 0.87622 0.89578 1.22782 0.94625 1.01357 1.01456 1.21693 0.92101 0.92454 0.94225 1.17763 0.82612 0.86904 0.77845 1.90796 1.71384 1.28139 1.50232 1.45832 1.05221 1.11490 1.71758 1.21560 0.88827 0.85951 1.03283 1.22805 0.92139 0.96730 0.87862 0.92198 1.21434 0.86289 0.92815 0.99969 1.44067 1.00932 1.59706 1.27048 1.19206 0.88268 1.40900 0.90123 0.91293 1.25054 0.98576 1.00063 0.95961 1.70034 1.18730 1.52704 1.13188 0.86230 0.81838 0.77605 0.80743 1.21360 1.21663 1.20361 1.21456 0.98587 0.89355 0.89275 1.23326 0.82058 0.98137 1.00247 1.87794 1.28568 1.76732 1.37756 1.68208 1.41636 0.98122 1.13668 1.23259 0.86426 0.94621 0.90257 1.20614 1.00166 0.89380 1.04241 1.68063 1.09802 1.30535 1.14208 0.89339 0.89659 0.89718 0.82226 0.74851 0.90178 0.89665 0.95159 0.91706 0.93467 0.95342 0.88732 0.90008 0.94045 0.89301 0.89189 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.22 36.00 0.37 -0.22 16 2 C 0.18 1.69 6.83 -82.24 -0.56 1.13 16 3 C -0.18 -1.91 9.41 -38.90 -0.37 -2.28 16 4 C 0.14 1.83 6.79 -82.64 -0.56 1.26 16 5 C 0.57 8.21 7.83 -12.05 -0.09 8.12 16 6 O -0.53 -8.81 16.43 5.39 0.09 -8.72 16 7 N -0.69 -9.82 5.50 -61.06 -0.34 -10.16 16 8 C 0.13 1.92 5.34 -4.04 -0.02 1.89 16 9 C 0.06 1.12 2.81 -26.58 -0.07 1.05 16 10 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 11 C 0.12 2.51 6.02 -3.53 -0.02 2.49 16 12 N -0.59 -14.72 3.05 -171.83 -0.52 -15.24 16 13 C -0.26 -6.89 9.65 -15.06 -0.15 -7.03 16 14 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 15 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 16 N -0.90 -25.80 11.14 55.49 0.62 -25.18 16 17 Si 0.91 21.31 29.59 -169.99 -5.03 16.28 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.14 3.28 5.45 -3.53 -0.02 3.26 16 22 C 0.04 0.77 6.98 37.31 0.26 1.03 16 23 O -0.39 -7.32 10.33 -35.23 -0.36 -7.68 16 24 N -0.50 -6.14 9.60 -7.32 -0.07 -6.21 16 25 C 0.32 3.50 7.64 -157.31 -1.20 2.30 16 26 C -0.09 -0.63 10.31 36.01 0.37 -0.26 16 27 N -0.51 -5.44 10.25 -7.00 -0.07 -5.52 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.16 1.49 7.74 -52.48 -0.41 1.08 16 32 H 0.41 5.65 7.86 -40.82 -0.32 5.33 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.45 6.14 -51.93 -0.32 2.13 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -32.27 369.12 -8.78 -41.06 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.50 Total: 3.09 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -2.15 Total: 12.72 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.38 Total: -62.31 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.28 Total: -16.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.27 -8.78 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035541139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.088 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds