Wall clock time and date at job start Tue Mar 31 2020 12:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38805 * 120.42523 * 2 1 4 4 C 1.39493 * 118.26686 * 180.22901 * 3 2 1 5 5 C 1.48452 * 120.55587 * 179.72543 * 4 3 2 6 6 O 1.21476 * 119.99685 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00289 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99799 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46934 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.51544 * 305.00022 * 9 8 7 11 11 C 1.53294 * 109.51248 * 184.89489 * 9 8 7 12 12 N 1.47151 * 108.38434 * 187.77362 * 11 9 8 13 13 C 1.36935 * 120.98616 * 230.55781 * 12 11 9 14 14 H 1.07999 * 119.99923 * 26.24383 * 13 12 11 15 15 C 1.38811 * 120.00385 * 206.24448 * 13 12 11 16 16 N 1.31617 * 120.00113 * 16.90490 * 15 13 12 17 17 Si 1.86804 * 120.00122 * 196.90719 * 15 13 12 18 18 H 1.48496 * 109.47264 * 89.99872 * 17 15 13 19 19 H 1.48500 * 109.47097 * 209.99595 * 17 15 13 20 20 H 1.48503 * 109.46833 * 329.99864 * 17 15 13 21 21 C 1.47157 * 118.03395 * 50.54053 * 12 11 9 22 22 C 1.53297 * 108.38381 * 309.46068 * 21 12 11 23 23 O 1.42957 * 109.26226 * 52.27839 * 22 21 12 24 24 N 1.33111 * 118.89533 * 359.49266 * 4 3 2 25 25 C 1.31548 * 120.73541 * 0.51895 * 24 4 3 26 26 C 1.50705 * 119.03943 * 179.75439 * 25 24 4 27 27 N 1.31908 * 121.92304 * 359.73157 * 25 24 4 28 28 H 1.09003 * 109.46969 * 90.00149 * 1 2 3 29 29 H 1.08993 * 109.47329 * 209.99904 * 1 2 3 30 30 H 1.08999 * 109.47776 * 330.00594 * 1 2 3 31 31 H 1.08008 * 120.87195 * 359.94865 * 3 2 1 32 32 H 0.96998 * 119.99869 * 359.97438 * 7 5 4 33 33 H 1.08995 * 109.47232 * 299.99304 * 8 7 5 34 34 H 1.09003 * 109.47416 * 59.99791 * 8 7 5 35 35 H 1.08993 * 109.68316 * 307.49750 * 11 9 8 36 36 H 1.08997 * 109.68156 * 68.01706 * 11 9 8 37 37 H 0.97002 * 120.00206 * 180.02562 * 16 15 13 38 38 H 1.08991 * 109.68520 * 69.18817 * 21 12 11 39 39 H 1.09006 * 109.67930 * 189.69941 * 21 12 11 40 40 H 1.08999 * 109.51363 * 172.23125 * 22 21 12 41 41 H 1.09002 * 109.51029 * 292.37818 * 22 21 12 42 42 H 1.09000 * 109.46997 * 269.97877 * 26 25 24 43 43 H 1.09007 * 109.47141 * 29.97614 * 26 25 24 44 44 H 1.08998 * 109.47395 * 149.97792 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6038 1.1444 -0.0049 5 6 4.4061 2.3934 -0.0113 6 8 3.8491 3.4730 -0.0127 7 7 5.7523 2.3297 -0.0165 8 6 6.5440 3.5624 -0.0222 9 6 8.0333 3.2119 -0.0268 10 1 8.2558 2.5569 0.8155 11 6 8.8618 4.4963 0.0906 12 7 10.2795 4.1535 -0.1041 13 6 11.2336 4.5667 0.7871 14 1 10.9641 4.7627 1.8144 15 6 12.5470 4.7336 0.3702 16 7 12.8236 4.8243 -0.9133 17 14 13.9221 4.8296 1.6310 18 1 14.4427 3.4653 1.9005 19 1 15.0179 5.6823 1.1043 20 1 13.3989 5.4176 2.8903 21 6 10.6418 3.3530 -1.2846 22 6 9.7265 2.1243 -1.3349 23 8 8.3637 2.5475 -1.2487 24 7 4.2027 -0.0444 0.0009 25 6 3.4954 -1.1535 0.0009 26 6 4.2130 -2.4788 0.0020 27 7 2.1764 -1.1397 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6911 2.1443 -0.0008 32 1 6.1970 1.4676 -0.0157 33 1 6.3045 4.1438 -0.9125 34 1 6.3115 4.1477 0.8675 35 1 8.5477 5.2069 -0.6739 36 1 8.7219 4.9345 1.0787 37 1 13.7415 4.9406 -1.2047 38 1 10.5069 3.9485 -2.1874 39 1 11.6813 3.0342 -1.2070 40 1 9.8837 1.5914 -2.2727 41 1 9.9559 1.4649 -0.4978 42 1 4.3864 -2.7989 -1.0254 43 1 5.1685 -2.3742 0.5161 44 1 3.6033 -3.2217 0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035541139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:11 Heat of formation + Delta-G solvation = -33.515654 kcal Electronic energy + Delta-G solvation = -26433.472115 eV Core-core repulsion = 22578.821314 eV Total energy + Delta-G solvation = -3854.650801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.42422 -40.77964 -39.94591 -36.59490 -36.02058 -35.57970 -34.56878 -33.36890 -32.33240 -30.18038 -29.38785 -29.18513 -27.61341 -25.58024 -24.89331 -23.33780 -23.23226 -21.96707 -21.28815 -19.44923 -18.91919 -18.33344 -17.56395 -17.09167 -16.92592 -16.78040 -16.56430 -16.15745 -15.97808 -15.79194 -15.50982 -15.20643 -15.00413 -14.62340 -14.45786 -14.26935 -14.08975 -13.85409 -13.34773 -13.24708 -13.18733 -13.09914 -13.01942 -12.71128 -12.54536 -12.17994 -12.09591 -12.05365 -11.89394 -11.69623 -11.64040 -11.33884 -10.81665 -10.57270 -10.52686 -10.46204 -10.25698 -8.77264 -7.92128 -5.39731 -0.66980 -0.19936 1.46764 1.47743 1.53969 1.56875 1.77481 2.46626 2.62618 2.68067 2.76566 2.86780 3.22751 3.35391 3.46918 3.70171 3.86961 3.92577 4.03363 4.20652 4.29233 4.34633 4.45388 4.49448 4.57911 4.67527 4.69792 4.70359 4.72739 4.74519 4.85498 4.87520 4.90207 5.03185 5.16115 5.18367 5.22764 5.37466 5.54356 5.60273 5.73439 6.23639 6.27980 6.32114 6.83443 6.94056 7.04945 7.72914 8.26576 9.13982 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.002426 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.862230 B =11540.680320 C =12014.609482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.181 3.819 3 C -0.181 4.181 4 C 0.122 3.878 5 C 0.568 3.432 6 O -0.555 6.555 7 N -0.689 5.689 8 C 0.137 3.863 9 C 0.078 3.922 10 H 0.068 0.932 11 C 0.118 3.882 12 N -0.613 5.613 13 C -0.266 4.266 14 H 0.074 0.926 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.283 1.283 19 H -0.296 1.296 20 H -0.268 1.268 21 C 0.143 3.857 22 C 0.054 3.946 23 O -0.391 6.391 24 N -0.514 5.514 25 C 0.311 3.689 26 C -0.083 4.083 27 N -0.518 5.518 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.419 0.581 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.021 0.979 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.000 1.000 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.050 0.950 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.573 -14.158 2.296 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.204 4.204 4 C -0.025 4.025 5 C 0.352 3.648 6 O -0.433 6.433 7 N -0.340 5.340 8 C 0.014 3.986 9 C 0.018 3.982 10 H 0.086 0.914 11 C -0.009 4.009 12 N -0.337 5.337 13 C -0.395 4.395 14 H 0.091 0.909 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.800 3.200 18 H -0.209 1.209 19 H -0.223 1.223 20 H -0.192 1.192 21 C 0.017 3.983 22 C -0.023 4.023 23 O -0.310 6.310 24 N -0.232 5.232 25 C 0.044 3.956 26 C -0.142 4.142 27 N -0.234 5.234 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.399 -14.190 2.099 26.599 hybrid contribution 1.301 1.026 0.343 1.692 sum -21.099 -13.164 2.442 24.988 Atomic orbital electron populations 1.20960 0.84199 1.05660 1.05260 1.22477 0.99659 0.86797 0.87802 1.22975 0.93888 1.02437 1.01096 1.21529 0.92775 0.92011 0.96151 1.18004 0.82508 0.87332 0.76957 1.90773 1.71799 1.29272 1.51471 1.45739 1.05278 1.11219 1.71724 1.21378 0.87338 0.86369 1.03552 1.22662 0.92917 0.94935 0.87655 0.91386 1.21588 0.84662 0.94419 1.00188 1.44345 1.02289 1.60221 1.26889 1.19557 0.89063 1.40158 0.90760 0.90874 1.25840 1.00777 1.00361 0.97651 1.70190 1.18769 1.54200 1.14998 0.85198 0.78649 0.77451 0.78719 1.20909 1.22278 1.19237 1.21315 0.98382 0.90671 0.87888 1.23161 0.81139 0.95973 1.02067 1.87808 1.28031 1.76652 1.38527 1.68191 1.42123 0.98305 1.14598 1.23903 0.86877 0.95265 0.89599 1.20730 1.00246 0.88031 1.05147 1.68192 1.09782 1.30984 1.14476 0.87868 0.88945 0.87892 0.81217 0.74410 0.91033 0.88379 0.96137 0.90681 0.93926 0.98230 0.91362 0.87407 0.93125 0.88231 0.88802 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.22 71.23 0.73 -0.13 16 2 C 0.18 3.07 6.83 42.64 0.29 3.36 16 3 C -0.18 -3.62 9.41 22.71 0.21 -3.41 16 4 C 0.12 3.01 6.79 41.98 0.29 3.30 16 5 C 0.57 16.11 7.83 86.97 0.68 16.79 16 6 O -0.56 -18.19 16.43 -3.64 -0.06 -18.25 16 7 N -0.69 -18.87 5.50 -465.39 -2.56 -21.43 16 8 C 0.14 4.00 5.34 86.38 0.46 4.46 16 9 C 0.08 2.62 2.81 30.69 0.09 2.71 16 10 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 11 C 0.12 4.81 6.02 86.35 0.52 5.33 16 12 N -0.61 -30.63 3.05 -697.55 -2.13 -32.76 16 13 C -0.27 -14.36 9.65 84.03 0.81 -13.55 16 14 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 15 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 16 N -0.94 -54.81 11.14 21.65 0.24 -54.57 16 17 Si 0.97 44.05 29.59 68.60 2.03 46.08 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.14 6.89 5.45 86.35 0.47 7.36 16 22 C 0.05 2.02 6.98 72.08 0.50 2.53 16 23 O -0.39 -14.23 10.33 -148.98 -1.54 -15.77 16 24 N -0.51 -12.14 9.60 -177.09 -1.70 -13.84 16 25 C 0.31 6.31 7.64 138.79 1.06 7.37 16 26 C -0.08 -1.08 10.31 71.24 0.73 -0.35 16 27 N -0.52 -10.14 10.25 -176.06 -1.81 -11.94 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.49 8.10 -2.39 -0.02 0.48 16 31 H 0.17 2.93 7.74 -2.91 -0.02 2.91 16 32 H 0.42 10.90 7.86 -92.71 -0.73 10.17 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 37 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 3.63 6.14 -2.38 -0.01 3.62 16 40 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -69.85 369.12 0.04 -69.81 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.29 Total: 19.26 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 7.27 Total: 33.40 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -7.95 Total: -134.54 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.60 Total: -34.02 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.85 0.04 -69.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035541139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.297 kcal (2) G-P(sol) polarization free energy of solvation -69.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds