Wall clock time and date at job start Tue Mar 31 2020 12:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38801 * 120.42848 * 2 1 4 4 C 1.39497 * 118.26342 * 180.27989 * 3 2 1 5 5 C 1.48457 * 120.54879 * 179.76577 * 4 3 2 6 6 O 1.21474 * 120.00073 * 359.71564 * 5 4 3 7 7 N 1.34783 * 119.99794 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99714 * 179.72107 * 7 5 4 9 9 C 1.52999 * 109.46587 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.51371 * 60.00185 * 9 8 7 11 11 C 1.53295 * 109.51078 * 180.10236 * 9 8 7 12 12 N 1.47146 * 108.38895 * 172.22500 * 11 9 8 13 13 C 1.36936 * 120.98545 * 129.48421 * 12 11 9 14 14 H 1.08000 * 119.99816 * 333.61842 * 13 12 11 15 15 C 1.38810 * 120.00291 * 153.61444 * 13 12 11 16 16 N 1.31625 * 120.00044 * 343.16878 * 15 13 12 17 17 Si 1.86797 * 120.00222 * 163.16970 * 15 13 12 18 18 H 1.48499 * 109.47183 * 94.43107 * 17 15 13 19 19 H 1.48501 * 109.47105 * 214.42928 * 17 15 13 20 20 H 1.48500 * 109.47318 * 334.43170 * 17 15 13 21 21 C 1.47153 * 118.03764 * 309.46735 * 12 11 9 22 22 C 1.53302 * 108.38572 * 50.52891 * 21 12 11 23 23 O 1.42961 * 109.51356 * 299.89711 * 9 8 7 24 24 N 1.33098 * 118.90261 * 359.48673 * 4 3 2 25 25 C 1.31563 * 120.73510 * 0.25418 * 24 4 3 26 26 C 1.50698 * 119.03846 * 179.97438 * 25 24 4 27 27 N 1.31913 * 121.91596 * 0.02562 * 25 24 4 28 28 H 1.09001 * 109.47393 * 270.23317 * 1 2 3 29 29 H 1.09006 * 109.47080 * 30.23448 * 1 2 3 30 30 H 1.09003 * 109.47293 * 150.23394 * 1 2 3 31 31 H 1.08005 * 120.87198 * 0.04796 * 3 2 1 32 32 H 0.96998 * 120.00135 * 359.72247 * 7 5 4 33 33 H 1.08994 * 109.47102 * 299.99490 * 8 7 5 34 34 H 1.08997 * 109.46996 * 60.00083 * 8 7 5 35 35 H 1.09004 * 109.68095 * 291.95238 * 11 9 8 36 36 H 1.09004 * 109.68495 * 52.50287 * 11 9 8 37 37 H 0.97000 * 120.00123 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.68758 * 170.25445 * 21 12 11 39 39 H 1.08999 * 109.68049 * 290.77364 * 21 12 11 40 40 H 1.09002 * 109.50657 * 67.62275 * 22 21 12 41 41 H 1.08998 * 109.51614 * 187.72503 * 22 21 12 42 42 H 1.09003 * 109.47236 * 90.00408 * 26 25 24 43 43 H 1.09006 * 109.47231 * 209.99699 * 26 25 24 44 44 H 1.08997 * 109.47493 * 329.99977 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1441 -0.0060 5 6 4.4062 2.3932 -0.0115 6 8 3.8493 3.4728 -0.0160 7 7 5.7525 2.3294 -0.0168 8 6 6.5442 3.5620 -0.0284 9 6 8.0335 3.2114 -0.0317 10 1 8.2668 2.6218 -0.9183 11 6 8.8629 4.5006 -0.0413 12 7 10.2782 4.1433 0.1447 13 6 11.2432 4.6230 -0.7003 14 1 10.9871 4.8947 -1.7136 15 6 12.5505 4.7599 -0.2543 16 7 12.8098 4.7535 1.0362 17 14 13.9420 4.9534 -1.4855 18 1 14.2234 6.3968 -1.6917 19 1 15.1598 4.2810 -0.9658 20 1 13.5490 4.3362 -2.7777 21 6 10.6261 3.2557 1.2656 22 6 9.7107 2.0272 1.2116 23 8 8.3489 2.4564 1.1406 24 7 4.2027 -0.0445 -0.0010 25 6 3.4953 -1.1538 0.0044 26 6 4.2129 -2.4789 0.0093 27 7 2.1763 -1.1397 0.0046 28 1 -0.3634 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5102 31 1 1.6913 2.1442 0.0008 32 1 6.1972 1.4673 -0.0129 33 1 6.3045 4.1393 -0.9213 34 1 6.3120 4.1513 0.8586 35 1 8.7356 5.0119 -0.9955 36 1 8.5390 5.1516 0.7708 37 1 13.7233 4.8496 1.3478 38 1 11.6663 2.9426 1.1769 39 1 10.4802 3.7816 2.2091 40 1 9.9508 1.4329 0.3299 41 1 9.8570 1.4244 2.1079 42 1 4.3869 -2.7941 1.0381 43 1 3.6028 -3.2244 -0.5008 44 1 5.1680 -2.3769 -0.5059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035541140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:16 Heat of formation + Delta-G solvation = -10.845684 kcal Electronic energy + Delta-G solvation = -26447.506685 eV Core-core repulsion = 22593.838927 eV Total energy + Delta-G solvation = -3853.667757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.58617 -39.57658 -38.43553 -35.20722 -34.82034 -34.28746 -33.75684 -31.57335 -30.67740 -29.60878 -28.52264 -27.69481 -26.10023 -24.32215 -23.17293 -22.55854 -21.81230 -20.77335 -19.70781 -18.45725 -17.51635 -16.86357 -16.19425 -15.90345 -15.82563 -15.68893 -15.15893 -14.89290 -14.77594 -14.39482 -14.10329 -13.79652 -13.77222 -13.46059 -13.25289 -13.12010 -12.87013 -12.80146 -12.67541 -12.61744 -12.34849 -11.59764 -11.26524 -11.14834 -10.88241 -10.84647 -10.75359 -10.54770 -10.41749 -10.30713 -10.00437 -9.73740 -9.72275 -9.57718 -9.10757 -9.06058 -8.56873 -6.78211 -5.87041 -3.30740 0.22928 0.56472 2.57053 2.85611 3.32290 3.39666 3.41735 3.48591 3.49518 3.59208 4.13941 4.26776 4.40909 4.56458 4.57541 4.94521 5.06057 5.08352 5.09604 5.16352 5.24955 5.30508 5.40373 5.43265 5.46735 5.51981 5.62889 5.77153 5.78646 5.98506 6.02797 6.12906 6.24231 6.34697 6.39043 6.46027 6.56029 6.71940 7.07671 7.39776 7.49401 7.68180 7.69788 7.82780 8.03078 8.30597 9.08535 9.71266 10.28026 11.21155 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026042 B = 0.002428 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.936535 B =11530.989405 C =12048.727025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.178 3.822 3 C -0.179 4.179 4 C 0.143 3.857 5 C 0.566 3.434 6 O -0.530 6.530 7 N -0.692 5.692 8 C 0.127 3.873 9 C 0.065 3.935 10 H 0.060 0.940 11 C 0.122 3.878 12 N -0.594 5.594 13 C -0.256 4.256 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.139 3.861 22 C 0.040 3.960 23 O -0.389 6.389 24 N -0.498 5.498 25 C 0.322 3.678 26 C -0.086 4.086 27 N -0.510 5.510 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.030 0.970 37 H 0.255 0.745 38 H 0.094 0.906 39 H 0.028 0.972 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 -12.591 -1.728 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.202 4.202 4 C -0.005 4.005 5 C 0.348 3.652 6 O -0.406 6.406 7 N -0.342 5.342 8 C 0.004 3.996 9 C 0.005 3.995 10 H 0.078 0.922 11 C -0.005 4.005 12 N -0.317 5.317 13 C -0.385 4.385 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.014 3.986 22 C -0.038 4.038 23 O -0.308 6.308 24 N -0.216 5.216 25 C 0.054 3.946 26 C -0.144 4.144 27 N -0.226 5.226 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.178 0.822 32 H 0.252 0.748 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.618 -12.637 -1.516 24.230 hybrid contribution 0.879 0.637 -0.628 1.254 sum -19.739 -11.999 -2.145 23.199 Atomic orbital electron populations 1.20813 0.87139 1.04386 1.04009 1.21837 0.97880 0.87625 0.89595 1.22780 0.94628 1.01353 1.01470 1.21692 0.92094 0.92458 0.94216 1.17769 0.82623 0.86902 0.77858 1.90794 1.71396 1.28136 1.50280 1.45808 1.05177 1.11539 1.71686 1.21570 0.88793 0.86003 1.03235 1.22810 0.92213 0.95677 0.88845 0.92197 1.21440 0.86335 0.92770 0.99981 1.44063 1.00781 1.53766 1.33138 1.19188 0.88239 1.38946 0.92104 0.91344 1.25055 0.98621 1.00250 0.95734 1.70037 1.19230 1.53390 1.12005 0.86241 0.81840 0.77820 0.80637 1.21341 1.21467 1.20377 1.21448 0.98642 0.88347 0.90200 1.23326 0.82073 0.98104 1.00249 1.87784 1.28609 1.72223 1.42229 1.68212 1.41624 0.98119 1.13643 1.23264 0.86421 0.94623 0.90257 1.20612 1.00167 0.89378 1.04243 1.68065 1.09806 1.30529 1.14212 0.89344 0.89723 0.89661 0.82234 0.74764 0.89711 0.90249 0.91707 0.95179 0.93488 0.88766 0.95349 0.94040 0.89998 0.89305 0.89462 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.22 36.00 0.37 -0.22 16 2 C 0.18 1.69 6.83 -82.24 -0.56 1.13 16 3 C -0.18 -1.92 9.41 -38.90 -0.37 -2.29 16 4 C 0.14 1.84 6.79 -82.64 -0.56 1.27 16 5 C 0.57 8.24 7.83 -12.05 -0.09 8.15 16 6 O -0.53 -8.83 16.43 5.39 0.09 -8.74 16 7 N -0.69 -9.86 5.44 -61.06 -0.33 -10.19 16 8 C 0.13 1.92 5.37 -4.04 -0.02 1.90 16 9 C 0.06 1.12 2.86 -26.58 -0.08 1.05 16 10 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.12 2.51 6.02 -3.54 -0.02 2.49 16 12 N -0.59 -14.72 3.05 -171.83 -0.52 -15.24 16 13 C -0.26 -6.89 9.65 -15.06 -0.15 -7.03 16 14 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 15 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 16 N -0.90 -25.80 11.15 55.49 0.62 -25.18 16 17 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.14 3.29 5.44 -3.53 -0.02 3.27 16 22 C 0.04 0.77 6.98 37.31 0.26 1.03 16 23 O -0.39 -7.29 10.14 -35.23 -0.36 -7.64 16 24 N -0.50 -6.17 9.60 -7.32 -0.07 -6.24 16 25 C 0.32 3.51 7.64 -157.29 -1.20 2.31 16 26 C -0.09 -0.64 10.31 36.00 0.37 -0.26 16 27 N -0.51 -5.46 10.25 -7.00 -0.07 -5.53 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.16 1.49 7.74 -52.48 -0.41 1.09 16 32 H 0.42 5.72 7.74 -40.82 -0.32 5.41 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -32.28 368.84 -8.77 -41.05 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.50 Total: 3.15 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -2.15 Total: 12.76 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.38 Total: -62.39 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.27 Total: -16.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.28 -8.77 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035541140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.201 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds