Wall clock time and date at job start Tue Mar 31 2020 12:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38801 * 120.42848 * 2 1 4 4 C 1.39497 * 118.26342 * 180.27989 * 3 2 1 5 5 C 1.48457 * 120.54879 * 179.76577 * 4 3 2 6 6 O 1.21474 * 120.00073 * 359.71564 * 5 4 3 7 7 N 1.34783 * 119.99794 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99714 * 179.72107 * 7 5 4 9 9 C 1.52999 * 109.46587 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.51371 * 60.00185 * 9 8 7 11 11 C 1.53295 * 109.51078 * 180.10236 * 9 8 7 12 12 N 1.47146 * 108.38895 * 172.22500 * 11 9 8 13 13 C 1.36936 * 120.98545 * 129.48421 * 12 11 9 14 14 H 1.08000 * 119.99816 * 333.61842 * 13 12 11 15 15 C 1.38810 * 120.00291 * 153.61444 * 13 12 11 16 16 N 1.31625 * 120.00044 * 343.16878 * 15 13 12 17 17 Si 1.86797 * 120.00222 * 163.16970 * 15 13 12 18 18 H 1.48499 * 109.47183 * 94.43107 * 17 15 13 19 19 H 1.48501 * 109.47105 * 214.42928 * 17 15 13 20 20 H 1.48500 * 109.47318 * 334.43170 * 17 15 13 21 21 C 1.47153 * 118.03764 * 309.46735 * 12 11 9 22 22 C 1.53302 * 108.38572 * 50.52891 * 21 12 11 23 23 O 1.42961 * 109.51356 * 299.89711 * 9 8 7 24 24 N 1.33098 * 118.90261 * 359.48673 * 4 3 2 25 25 C 1.31563 * 120.73510 * 0.25418 * 24 4 3 26 26 C 1.50698 * 119.03846 * 179.97438 * 25 24 4 27 27 N 1.31913 * 121.91596 * 0.02562 * 25 24 4 28 28 H 1.09001 * 109.47393 * 270.23317 * 1 2 3 29 29 H 1.09006 * 109.47080 * 30.23448 * 1 2 3 30 30 H 1.09003 * 109.47293 * 150.23394 * 1 2 3 31 31 H 1.08005 * 120.87198 * 0.04796 * 3 2 1 32 32 H 0.96998 * 120.00135 * 359.72247 * 7 5 4 33 33 H 1.08994 * 109.47102 * 299.99490 * 8 7 5 34 34 H 1.08997 * 109.46996 * 60.00083 * 8 7 5 35 35 H 1.09004 * 109.68095 * 291.95238 * 11 9 8 36 36 H 1.09004 * 109.68495 * 52.50287 * 11 9 8 37 37 H 0.97000 * 120.00123 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.68758 * 170.25445 * 21 12 11 39 39 H 1.08999 * 109.68049 * 290.77364 * 21 12 11 40 40 H 1.09002 * 109.50657 * 67.62275 * 22 21 12 41 41 H 1.08998 * 109.51614 * 187.72503 * 22 21 12 42 42 H 1.09003 * 109.47236 * 90.00408 * 26 25 24 43 43 H 1.09006 * 109.47231 * 209.99699 * 26 25 24 44 44 H 1.08997 * 109.47493 * 329.99977 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1441 -0.0060 5 6 4.4062 2.3932 -0.0115 6 8 3.8493 3.4728 -0.0160 7 7 5.7525 2.3294 -0.0168 8 6 6.5442 3.5620 -0.0284 9 6 8.0335 3.2114 -0.0317 10 1 8.2668 2.6218 -0.9183 11 6 8.8629 4.5006 -0.0413 12 7 10.2782 4.1433 0.1447 13 6 11.2432 4.6230 -0.7003 14 1 10.9871 4.8947 -1.7136 15 6 12.5505 4.7599 -0.2543 16 7 12.8098 4.7535 1.0362 17 14 13.9420 4.9534 -1.4855 18 1 14.2234 6.3968 -1.6917 19 1 15.1598 4.2810 -0.9658 20 1 13.5490 4.3362 -2.7777 21 6 10.6261 3.2557 1.2656 22 6 9.7107 2.0272 1.2116 23 8 8.3489 2.4564 1.1406 24 7 4.2027 -0.0445 -0.0010 25 6 3.4953 -1.1538 0.0044 26 6 4.2129 -2.4789 0.0093 27 7 2.1763 -1.1397 0.0046 28 1 -0.3634 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5102 31 1 1.6913 2.1442 0.0008 32 1 6.1972 1.4673 -0.0129 33 1 6.3045 4.1393 -0.9213 34 1 6.3120 4.1513 0.8586 35 1 8.7356 5.0119 -0.9955 36 1 8.5390 5.1516 0.7708 37 1 13.7233 4.8496 1.3478 38 1 11.6663 2.9426 1.1769 39 1 10.4802 3.7816 2.2091 40 1 9.9508 1.4329 0.3299 41 1 9.8570 1.4244 2.1079 42 1 4.3869 -2.7941 1.0381 43 1 3.6028 -3.2244 -0.5008 44 1 5.1680 -2.3769 -0.5059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035541140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:15 Heat of formation + Delta-G solvation = -33.340437 kcal Electronic energy + Delta-G solvation = -26448.482130 eV Core-core repulsion = 22593.838927 eV Total energy + Delta-G solvation = -3854.643203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.42141 -40.77815 -39.94140 -36.59515 -36.00926 -35.57285 -34.56672 -33.37051 -32.32893 -30.17850 -29.38903 -29.18453 -27.61077 -25.58385 -24.88550 -23.33356 -23.23016 -21.93989 -21.29888 -19.44901 -18.91867 -18.33448 -17.55992 -17.08329 -16.92378 -16.77039 -16.56273 -16.16748 -15.98178 -15.77896 -15.50902 -15.21194 -15.00139 -14.63521 -14.44952 -14.26860 -14.08765 -13.85056 -13.34633 -13.24044 -13.18630 -13.09777 -13.02232 -12.70670 -12.51722 -12.20441 -12.09707 -12.05174 -11.89277 -11.69719 -11.63940 -11.33073 -10.81955 -10.56853 -10.52347 -10.45988 -10.24761 -8.76666 -7.92279 -5.39608 -0.66744 -0.19774 1.46055 1.47562 1.54270 1.57701 1.77731 2.46763 2.62760 2.67548 2.77470 2.86986 3.23084 3.35833 3.47337 3.70412 3.87153 3.93194 4.02493 4.21159 4.29446 4.34811 4.45421 4.49341 4.58839 4.67663 4.70178 4.70533 4.73306 4.74615 4.85601 4.87720 4.90385 5.03372 5.16194 5.18183 5.23086 5.37606 5.54456 5.60321 5.73702 6.23588 6.28774 6.32228 6.83870 6.94425 7.05060 7.73083 8.26756 9.14001 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026042 B = 0.002428 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.936535 B =11530.989405 C =12048.727025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.181 3.819 3 C -0.181 4.181 4 C 0.122 3.878 5 C 0.567 3.433 6 O -0.556 6.556 7 N -0.689 5.689 8 C 0.137 3.863 9 C 0.078 3.922 10 H 0.068 0.932 11 C 0.118 3.882 12 N -0.613 5.613 13 C -0.266 4.266 14 H 0.073 0.927 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.267 1.267 21 C 0.144 3.856 22 C 0.054 3.946 23 O -0.390 6.390 24 N -0.514 5.514 25 C 0.311 3.689 26 C -0.083 4.083 27 N -0.518 5.518 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.170 0.830 32 H 0.419 0.581 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.020 0.980 37 H 0.252 0.748 38 H 0.068 0.932 39 H -0.001 1.001 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.501 -14.038 -2.750 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.204 4.204 4 C -0.025 4.025 5 C 0.352 3.648 6 O -0.433 6.433 7 N -0.339 5.339 8 C 0.014 3.986 9 C 0.018 3.982 10 H 0.086 0.914 11 C -0.009 4.009 12 N -0.337 5.337 13 C -0.396 4.396 14 H 0.091 0.909 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.799 3.201 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.192 1.192 21 C 0.018 3.982 22 C -0.023 4.023 23 O -0.310 6.310 24 N -0.232 5.232 25 C 0.044 3.956 26 C -0.142 4.142 27 N -0.234 5.234 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.188 0.812 32 H 0.256 0.744 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.017 0.983 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.326 -14.103 -2.550 26.530 hybrid contribution 1.306 1.097 -0.291 1.730 sum -21.020 -13.006 -2.841 24.881 Atomic orbital electron populations 1.20961 0.84198 1.05658 1.05257 1.22476 0.99659 0.86798 0.87813 1.22973 0.93886 1.02437 1.01109 1.21530 0.92774 0.92015 0.96146 1.18011 0.82517 0.87333 0.76974 1.90771 1.71805 1.29261 1.51510 1.45720 1.05242 1.11266 1.71662 1.21396 0.87306 0.86393 1.03548 1.22665 0.92998 0.93795 0.88718 0.91399 1.21594 0.84718 0.94480 1.00082 1.44342 1.02123 1.54291 1.32984 1.19549 0.89056 1.38271 0.92684 0.90903 1.25843 1.00886 1.00604 0.97309 1.70193 1.19307 1.54894 1.13776 0.85204 0.78625 0.77477 0.78778 1.21352 1.21733 1.19200 1.21307 0.98436 0.89775 0.88700 1.23160 0.81147 0.96002 1.02006 1.87799 1.28066 1.72177 1.42928 1.68195 1.42122 0.98309 1.14581 1.23908 0.86875 0.95265 0.89600 1.20728 1.00250 0.88033 1.05141 1.68193 1.09781 1.30980 1.14477 0.87873 0.87894 0.88942 0.81219 0.74369 0.88347 0.91104 0.90681 0.96192 0.93923 0.91394 0.98265 0.93112 0.87377 0.88247 0.88087 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.22 71.23 0.73 -0.13 16 2 C 0.18 3.08 6.83 42.64 0.29 3.37 16 3 C -0.18 -3.64 9.41 22.71 0.21 -3.42 16 4 C 0.12 3.03 6.79 41.98 0.29 3.31 16 5 C 0.57 16.16 7.83 86.97 0.68 16.85 16 6 O -0.56 -18.23 16.43 -3.64 -0.06 -18.29 16 7 N -0.69 -18.96 5.44 -465.38 -2.53 -21.49 16 8 C 0.14 4.00 5.37 86.38 0.46 4.46 16 9 C 0.08 2.62 2.86 30.69 0.09 2.71 16 10 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 11 C 0.12 4.81 6.02 86.35 0.52 5.33 16 12 N -0.61 -30.64 3.05 -697.55 -2.13 -32.77 16 13 C -0.27 -14.38 9.65 84.03 0.81 -13.57 16 14 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 15 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 16 N -0.94 -54.81 11.15 21.65 0.24 -54.57 16 17 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.14 6.90 5.44 86.36 0.47 7.37 16 22 C 0.05 2.03 6.98 72.08 0.50 2.53 16 23 O -0.39 -14.15 10.14 -148.98 -1.51 -15.66 16 24 N -0.51 -12.21 9.60 -177.08 -1.70 -13.91 16 25 C 0.31 6.34 7.64 138.78 1.06 7.40 16 26 C -0.08 -1.09 10.31 71.24 0.73 -0.35 16 27 N -0.52 -10.17 10.25 -176.05 -1.81 -11.98 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.50 8.10 -2.38 -0.02 0.48 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.17 2.94 7.74 -2.91 -0.02 2.92 16 32 H 0.42 11.04 7.74 -92.71 -0.72 10.32 16 33 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.87 7.96 -2.38 -0.02 2.85 16 36 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.07 3.61 6.15 -2.39 -0.01 3.60 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.88 368.84 0.11 -69.77 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.30 Total: 19.38 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 7.27 Total: 33.46 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -7.92 Total: -134.71 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.57 Total: -33.95 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.88 0.11 -69.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035541140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.432 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds