Wall clock time and date at job start Tue Mar 31 2020 12:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31880 * 118.95142 * 2 1 4 4 C 1.32137 * 120.96856 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.91795 * 359.97438 * 4 3 2 6 6 C 1.47831 * 120.93486 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99863 * 186.34083 * 6 5 4 8 8 N 1.34778 * 120.00134 * 6.33407 * 6 5 4 9 9 C 1.46506 * 119.99980 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47021 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.51259 * 60.00169 * 10 9 8 12 12 C 1.53299 * 109.50983 * 180.09946 * 10 9 8 13 13 N 1.47158 * 108.38208 * 172.22859 * 12 10 9 14 14 C 1.36925 * 120.98171 * 129.49015 * 13 12 10 15 15 H 1.08000 * 120.00297 * 207.02464 * 14 13 12 16 16 C 1.38810 * 120.00372 * 27.01763 * 14 13 12 17 17 N 1.31618 * 119.99996 * 15.87562 * 16 14 13 18 18 Si 1.86800 * 120.00291 * 195.87343 * 16 14 13 19 19 H 1.48495 * 109.47263 * 60.00227 * 18 16 14 20 20 H 1.48509 * 109.47180 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47117 * 299.99746 * 18 16 14 22 22 C 1.47154 * 118.03388 * 309.46703 * 13 12 10 23 23 C 1.53294 * 108.38574 * 50.53327 * 22 13 12 24 24 O 1.42954 * 109.51352 * 299.89938 * 10 9 8 25 25 C 1.39925 * 118.12560 * 0.02562 * 5 4 3 26 26 C 1.50699 * 120.53858 * 180.25154 * 25 5 4 27 27 N 1.31855 * 118.95094 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.46913 * 269.97918 * 1 2 3 29 29 H 1.08999 * 109.47108 * 29.97609 * 1 2 3 30 30 H 1.08998 * 109.47190 * 149.97897 * 1 2 3 31 31 H 1.07999 * 120.53695 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00014 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.46822 * 300.00392 * 9 8 6 34 34 H 1.09000 * 109.47114 * 60.00206 * 9 8 6 35 35 H 1.08999 * 109.68409 * 291.94750 * 12 10 9 36 36 H 1.09001 * 109.68000 * 52.47008 * 12 10 9 37 37 H 0.96999 * 120.00440 * 179.97438 * 17 16 14 38 38 H 1.08992 * 109.68312 * 170.26189 * 22 13 12 39 39 H 1.08999 * 109.67971 * 290.77467 * 22 13 12 40 40 H 1.09000 * 109.51049 * 67.62840 * 23 22 13 41 41 H 1.08999 * 109.51115 * 187.77195 * 23 22 13 42 42 H 1.08993 * 109.47187 * 276.70211 * 26 25 5 43 43 H 1.08998 * 109.46724 * 36.70752 * 26 25 5 44 44 H 1.09004 * 109.47014 * 156.70181 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2005 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6639 -0.0001 -0.0005 7 8 6.2716 -1.0463 -0.1167 8 7 6.3378 1.1600 0.1283 9 6 7.8028 1.1600 0.1277 10 6 8.3128 2.5936 0.2876 11 1 7.9502 3.0061 1.2292 12 6 9.8458 2.5950 0.2847 13 7 10.3086 3.9915 0.2505 14 6 11.2406 4.4472 1.1441 15 1 11.2625 5.4923 1.4158 16 6 12.1573 3.5661 1.7009 17 7 12.3455 2.3820 1.1579 18 14 13.1241 4.0609 3.2208 19 1 12.1837 4.3504 4.3330 20 1 14.0301 2.9519 3.6140 21 1 13.9275 5.2739 2.9233 22 6 9.7404 4.8835 -0.7727 23 6 8.2126 4.7705 -0.7182 24 8 7.8383 3.3932 -0.7982 25 6 3.4661 -1.2002 -0.0005 26 6 4.1857 -2.5243 0.0052 27 7 2.1453 -1.1538 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.9817 2.1494 -0.0009 32 1 5.8528 1.9949 0.2213 33 1 8.1664 0.5509 0.9553 34 1 8.1658 0.7478 -0.8138 35 1 10.2151 2.1079 1.1872 36 1 10.2117 2.0648 -0.5946 37 1 12.9864 1.7664 1.5468 38 1 10.0400 5.9118 -0.5705 39 1 10.0962 4.5847 -1.7587 40 1 7.8496 5.1919 0.2192 41 1 7.7772 5.3154 -1.5558 42 1 4.4684 -2.7886 -1.0137 43 1 5.0807 -2.4487 0.6227 44 1 3.5283 -3.2933 0.4109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035548720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:26 Heat of formation + Delta-G solvation = -8.120099 kcal Electronic energy + Delta-G solvation = -26768.237594 eV Core-core repulsion = 22914.688027 eV Total energy + Delta-G solvation = -3853.549567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.58688 -39.52006 -38.46624 -35.30624 -34.57023 -34.28914 -33.77595 -31.44676 -31.05338 -29.46739 -28.81958 -27.32164 -25.51486 -24.20694 -23.35791 -22.72636 -21.72398 -20.88149 -19.72712 -18.16350 -17.89966 -16.95712 -16.22121 -16.15817 -15.80344 -15.63882 -15.13091 -14.75218 -14.52610 -14.32836 -14.01846 -13.82068 -13.50436 -13.33035 -13.29598 -13.04872 -12.85919 -12.71753 -12.66951 -12.43107 -12.22781 -11.83424 -11.60107 -11.14625 -10.88808 -10.82582 -10.79318 -10.47514 -10.33876 -10.10392 -9.82338 -9.71665 -9.71477 -9.58098 -9.15662 -8.98506 -8.60775 -6.81008 -5.90039 -3.34980 0.17909 0.74119 2.70638 3.03429 3.31565 3.37878 3.38337 3.48907 3.53674 3.71105 4.08590 4.16979 4.38735 4.48832 4.69240 4.82368 5.08554 5.11336 5.16667 5.29990 5.32804 5.45583 5.49492 5.51536 5.53316 5.64008 5.78900 5.86346 5.88689 5.93102 6.04029 6.11871 6.18470 6.28199 6.42177 6.52932 6.63296 6.72496 6.99851 7.40760 7.43112 7.65154 7.73071 7.75666 8.10744 8.27880 9.05214 9.67733 10.24897 11.18116 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002693 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.991595 B =10395.721858 C =11031.761797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.336 3.664 3 N -0.527 5.527 4 C 0.191 3.809 5 C -0.250 4.250 6 C 0.565 3.435 7 O -0.529 6.529 8 N -0.711 5.711 9 C 0.133 3.867 10 C 0.053 3.947 11 H 0.057 0.943 12 C 0.153 3.847 13 N -0.594 5.594 14 C -0.258 4.258 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.906 3.094 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.109 3.891 23 C 0.050 3.950 24 O -0.391 6.391 25 C 0.238 3.762 26 C -0.111 4.111 27 N -0.526 5.526 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.400 0.600 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.032 0.968 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.233 -3.729 -2.069 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 N -0.242 5.242 4 C 0.024 3.976 5 C -0.258 4.258 6 C 0.350 3.650 7 O -0.407 6.407 8 N -0.362 5.362 9 C 0.010 3.990 10 C -0.006 4.006 11 H 0.075 0.925 12 C 0.027 3.973 13 N -0.318 5.318 14 C -0.388 4.388 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.018 4.018 23 C -0.028 4.028 24 O -0.310 6.310 25 C 0.092 3.908 26 C -0.168 4.168 27 N -0.241 5.241 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.235 0.765 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.726 -4.669 -2.243 21.363 hybrid contribution 1.497 0.980 0.952 2.027 sum -19.229 -3.689 -1.291 19.622 Atomic orbital electron populations 1.20636 0.85329 1.04458 1.04167 1.23525 0.98470 0.83401 0.87562 1.68299 1.09657 1.30085 1.16184 1.23511 0.89653 0.97785 0.86682 1.21641 0.96269 0.96346 1.11527 1.17703 0.85707 0.84281 0.77276 1.90754 1.69438 1.30786 1.49724 1.45881 1.08315 1.08709 1.73275 1.21502 0.77560 0.96420 1.03539 1.23173 0.99013 0.89025 0.89396 0.92537 1.21300 0.86378 0.86894 1.02777 1.44025 1.46737 1.06926 1.34086 1.19135 1.07682 0.94729 1.17217 0.91408 1.25086 0.97038 0.97315 1.00064 1.69989 1.36551 1.08522 1.39539 0.86320 0.79556 0.77581 0.83005 1.20937 1.21470 1.20780 1.21604 0.91650 0.95573 0.92942 1.23014 0.97211 0.82199 1.00366 1.87766 1.76095 1.20122 1.47060 1.22016 0.88719 0.95778 0.84315 1.21089 1.00467 0.90321 1.04894 1.68269 1.09194 1.30090 1.16585 0.89231 0.89299 0.89358 0.80993 0.76456 0.89595 0.90317 0.88570 0.94978 0.93285 0.91941 0.95521 0.93818 0.89947 0.89020 0.87413 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.34 3.65 7.64 -157.07 -1.20 2.45 16 3 N -0.53 -6.00 10.31 -10.39 -0.11 -6.10 16 4 C 0.19 2.06 10.80 -16.77 -0.18 1.88 16 5 C -0.25 -3.06 5.91 -104.69 -0.62 -3.68 16 6 C 0.57 7.83 7.72 -12.34 -0.10 7.74 16 7 O -0.53 -8.60 13.56 5.32 0.07 -8.53 16 8 N -0.71 -9.41 5.41 -61.25 -0.33 -9.74 16 9 C 0.13 2.09 5.37 -4.04 -0.02 2.07 16 10 C 0.05 0.95 2.86 -26.58 -0.08 0.88 16 11 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 12 C 0.15 3.47 4.72 -3.53 -0.02 3.46 16 13 N -0.59 -14.38 3.05 -171.83 -0.52 -14.90 16 14 C -0.26 -6.84 9.65 -15.07 -0.15 -6.99 16 15 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 16 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 17 N -0.90 -25.36 11.13 55.49 0.62 -24.74 16 18 Si 0.91 21.03 29.58 -169.99 -5.03 16.00 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 C 0.11 2.18 6.74 -3.53 -0.02 2.16 16 23 C 0.05 0.83 6.98 37.31 0.26 1.09 16 24 O -0.39 -6.83 10.14 -35.23 -0.36 -7.18 16 25 C 0.24 2.93 6.86 -81.82 -0.56 2.37 16 26 C -0.11 -1.21 8.96 36.00 0.32 -0.89 16 27 N -0.53 -6.28 10.26 -6.67 -0.07 -6.35 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.17 1.41 6.59 -52.49 -0.35 1.06 16 32 H 0.40 4.49 6.53 -40.82 -0.27 4.22 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.10 2.41 6.17 -51.93 -0.32 2.09 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.11 1.31 6.01 -51.93 -0.31 0.99 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -31.50 361.38 -8.63 -40.14 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.28 Total: 3.64 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -2.07 Total: 12.33 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.41 Total: -61.84 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.29 Total: -15.71 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.50 -8.63 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035548720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.015 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds