Wall clock time and date at job start Tue Mar 31 2020 12:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31880 * 118.95142 * 2 1 4 4 C 1.32137 * 120.96856 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.91795 * 359.97438 * 4 3 2 6 6 C 1.47831 * 120.93486 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99863 * 186.34083 * 6 5 4 8 8 N 1.34778 * 120.00134 * 6.33407 * 6 5 4 9 9 C 1.46506 * 119.99980 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47021 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.51259 * 60.00169 * 10 9 8 12 12 C 1.53299 * 109.50983 * 180.09946 * 10 9 8 13 13 N 1.47158 * 108.38208 * 172.22859 * 12 10 9 14 14 C 1.36925 * 120.98171 * 129.49015 * 13 12 10 15 15 H 1.08000 * 120.00297 * 207.02464 * 14 13 12 16 16 C 1.38810 * 120.00372 * 27.01763 * 14 13 12 17 17 N 1.31618 * 119.99996 * 15.87562 * 16 14 13 18 18 Si 1.86800 * 120.00291 * 195.87343 * 16 14 13 19 19 H 1.48495 * 109.47263 * 60.00227 * 18 16 14 20 20 H 1.48509 * 109.47180 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47117 * 299.99746 * 18 16 14 22 22 C 1.47154 * 118.03388 * 309.46703 * 13 12 10 23 23 C 1.53294 * 108.38574 * 50.53327 * 22 13 12 24 24 O 1.42954 * 109.51352 * 299.89938 * 10 9 8 25 25 C 1.39925 * 118.12560 * 0.02562 * 5 4 3 26 26 C 1.50699 * 120.53858 * 180.25154 * 25 5 4 27 27 N 1.31855 * 118.95094 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.46913 * 269.97918 * 1 2 3 29 29 H 1.08999 * 109.47108 * 29.97609 * 1 2 3 30 30 H 1.08998 * 109.47190 * 149.97897 * 1 2 3 31 31 H 1.07999 * 120.53695 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00014 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.46822 * 300.00392 * 9 8 6 34 34 H 1.09000 * 109.47114 * 60.00206 * 9 8 6 35 35 H 1.08999 * 109.68409 * 291.94750 * 12 10 9 36 36 H 1.09001 * 109.68000 * 52.47008 * 12 10 9 37 37 H 0.96999 * 120.00440 * 179.97438 * 17 16 14 38 38 H 1.08992 * 109.68312 * 170.26189 * 22 13 12 39 39 H 1.08999 * 109.67971 * 290.77467 * 22 13 12 40 40 H 1.09000 * 109.51049 * 67.62840 * 23 22 13 41 41 H 1.08999 * 109.51115 * 187.77195 * 23 22 13 42 42 H 1.08993 * 109.47187 * 276.70211 * 26 25 5 43 43 H 1.08998 * 109.46724 * 36.70752 * 26 25 5 44 44 H 1.09004 * 109.47014 * 156.70181 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2005 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6639 -0.0001 -0.0005 7 8 6.2716 -1.0463 -0.1167 8 7 6.3378 1.1600 0.1283 9 6 7.8028 1.1600 0.1277 10 6 8.3128 2.5936 0.2876 11 1 7.9502 3.0061 1.2292 12 6 9.8458 2.5950 0.2847 13 7 10.3086 3.9915 0.2505 14 6 11.2406 4.4472 1.1441 15 1 11.2625 5.4923 1.4158 16 6 12.1573 3.5661 1.7009 17 7 12.3455 2.3820 1.1579 18 14 13.1241 4.0609 3.2208 19 1 12.1837 4.3504 4.3330 20 1 14.0301 2.9519 3.6140 21 1 13.9275 5.2739 2.9233 22 6 9.7404 4.8835 -0.7727 23 6 8.2126 4.7705 -0.7182 24 8 7.8383 3.3932 -0.7982 25 6 3.4661 -1.2002 -0.0005 26 6 4.1857 -2.5243 0.0052 27 7 2.1453 -1.1538 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.9817 2.1494 -0.0009 32 1 5.8528 1.9949 0.2213 33 1 8.1664 0.5509 0.9553 34 1 8.1658 0.7478 -0.8138 35 1 10.2151 2.1079 1.1872 36 1 10.2117 2.0648 -0.5946 37 1 12.9864 1.7664 1.5468 38 1 10.0400 5.9118 -0.5705 39 1 10.0962 4.5847 -1.7587 40 1 7.8496 5.1919 0.2192 41 1 7.7772 5.3154 -1.5558 42 1 4.4684 -2.7886 -1.0137 43 1 5.0807 -2.4487 0.6227 44 1 3.5283 -3.2933 0.4109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035548720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:24 Heat of formation + Delta-G solvation = -29.972140 kcal Electronic energy + Delta-G solvation = -26769.185170 eV Core-core repulsion = 22914.688027 eV Total energy + Delta-G solvation = -3854.497142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.47264 -40.70874 -39.89511 -36.58753 -36.10440 -35.35518 -34.64226 -33.25339 -32.52635 -30.20160 -29.85061 -28.91183 -27.06256 -25.15721 -24.97769 -23.79879 -23.03368 -22.01633 -21.32600 -19.09856 -19.08497 -18.68120 -17.53007 -17.11727 -17.00642 -16.77842 -16.63316 -16.11495 -15.87635 -15.63828 -15.49771 -15.04018 -14.75399 -14.61099 -14.50636 -14.28154 -14.08505 -13.70297 -13.37049 -13.27144 -13.17766 -13.15117 -12.97895 -12.74240 -12.65329 -12.52863 -12.19273 -12.11295 -11.87806 -11.69027 -11.30905 -10.94241 -10.75743 -10.63856 -10.55201 -10.44853 -10.13724 -8.74371 -7.91450 -5.39799 -0.70474 -0.12538 1.46854 1.48638 1.55741 1.67834 1.91102 2.47556 2.59360 2.76806 2.80925 2.89876 3.23377 3.25231 3.48227 3.56488 3.75987 4.01387 4.07716 4.10428 4.27271 4.36414 4.46153 4.52170 4.61188 4.63921 4.65855 4.68452 4.71362 4.81280 4.83122 4.90621 4.97485 5.08022 5.13138 5.23643 5.29425 5.36852 5.53970 5.60118 5.77367 6.26298 6.32772 6.37528 6.88424 7.03522 7.06018 7.74480 8.28069 9.14149 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002693 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.991595 B =10395.721858 C =11031.761797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.537 5.537 4 C 0.199 3.801 5 C -0.264 4.264 6 C 0.569 3.431 7 O -0.558 6.558 8 N -0.701 5.701 9 C 0.145 3.855 10 C 0.075 3.925 11 H 0.066 0.934 12 C 0.159 3.841 13 N -0.614 5.614 14 C -0.267 4.267 15 H 0.073 0.927 16 C -0.049 4.049 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.275 1.275 22 C 0.101 3.899 23 C 0.057 3.943 24 O -0.389 6.389 25 C 0.229 3.771 26 C -0.106 4.106 27 N -0.537 5.537 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.198 0.802 32 H 0.413 0.587 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.001 0.999 37 H 0.252 0.748 38 H 0.071 0.929 39 H 0.015 0.985 40 H 0.055 0.945 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.644 -2.285 -1.738 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 N -0.252 5.252 4 C 0.031 3.969 5 C -0.271 4.271 6 C 0.355 3.645 7 O -0.438 6.438 8 N -0.352 5.352 9 C 0.021 3.979 10 C 0.015 3.985 11 H 0.084 0.916 12 C 0.032 3.968 13 N -0.339 5.339 14 C -0.396 4.396 15 H 0.091 0.909 16 C -0.245 4.245 17 N -0.581 5.581 18 Si 0.797 3.203 19 H -0.201 1.201 20 H -0.222 1.222 21 H -0.201 1.201 22 C -0.024 4.024 23 C -0.020 4.020 24 O -0.308 6.308 25 C 0.082 3.918 26 C -0.163 4.163 27 N -0.253 5.253 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.215 0.785 32 H 0.250 0.750 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.019 0.981 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.186 -3.184 -1.924 23.482 hybrid contribution 2.204 0.578 0.777 2.407 sum -20.982 -2.606 -1.147 21.174 Atomic orbital electron populations 1.20801 0.82646 1.05538 1.05410 1.24323 1.00138 0.83014 0.85977 1.68428 1.09715 1.30239 1.16787 1.23906 0.89671 0.98189 0.85091 1.21469 0.94974 0.97168 1.13523 1.17907 0.86404 0.83749 0.76416 1.90748 1.70198 1.31808 1.51008 1.45645 1.07053 1.09356 1.73178 1.21172 0.79165 0.94917 1.02680 1.22779 0.95306 0.90288 0.90115 0.91574 1.21090 0.89736 0.86044 0.99896 1.44334 1.46868 1.07728 1.34962 1.19500 1.07773 0.95004 1.17372 0.90917 1.25849 0.98429 0.97455 1.02770 1.70157 1.37437 1.09581 1.40913 0.85313 0.78163 0.76986 0.79808 1.20089 1.22189 1.20098 1.21833 0.94254 0.95188 0.91169 1.23079 0.94299 0.81915 1.02724 1.87785 1.75493 1.20752 1.46789 1.22233 0.89220 0.96214 0.84108 1.21022 1.00078 0.90490 1.04663 1.68358 1.08861 1.30715 1.17389 0.87682 0.88092 0.88378 0.78501 0.74974 0.90017 0.91743 0.91442 0.98108 0.93913 0.91035 0.96746 0.92623 0.86091 0.89020 0.88822 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.31 71.24 0.73 -0.22 16 2 C 0.33 6.51 7.64 138.71 1.06 7.57 16 3 N -0.54 -10.97 10.31 -186.78 -1.93 -12.90 16 4 C 0.20 3.87 10.80 85.07 0.92 4.78 16 5 C -0.26 -6.15 5.91 -19.91 -0.12 -6.27 16 6 C 0.57 15.43 7.72 86.78 0.67 16.10 16 7 O -0.56 -18.35 13.56 -3.89 -0.05 -18.40 16 8 N -0.70 -17.71 5.41 -465.98 -2.52 -20.23 16 9 C 0.14 4.56 5.37 86.38 0.46 5.02 16 10 C 0.07 2.61 2.86 30.69 0.09 2.70 16 11 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 12 C 0.16 7.40 4.72 86.35 0.41 7.81 16 13 N -0.61 -29.88 3.05 -697.54 -2.13 -32.01 16 14 C -0.27 -14.16 9.65 84.03 0.81 -13.35 16 15 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 16 C -0.05 -2.68 4.96 84.86 0.42 -2.26 16 17 N -0.94 -54.27 11.13 21.65 0.24 -54.03 16 18 Si 0.97 43.58 29.58 68.60 2.03 45.61 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.10 3.94 6.74 86.35 0.58 4.53 16 23 C 0.06 1.72 6.98 72.08 0.50 2.23 16 24 O -0.39 -12.74 10.14 -148.98 -1.51 -14.25 16 25 C 0.23 5.43 6.86 42.92 0.29 5.72 16 26 C -0.11 -2.29 8.96 71.24 0.64 -1.65 16 27 N -0.54 -12.08 10.26 -175.03 -1.79 -13.87 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.20 2.62 6.59 -2.91 -0.02 2.60 16 32 H 0.41 8.27 6.53 -92.71 -0.61 7.67 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 3.52 6.17 -2.39 -0.01 3.50 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.09 2.32 6.01 -2.39 -0.01 2.30 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -68.91 361.38 0.24 -68.67 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.42 Total: 18.70 kcal Atomic # 6 Polarization: 25.23 SS G_CDS: 7.47 Total: 32.70 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -8.12 Total: -133.03 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.56 Total: -32.65 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.91 0.24 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035548720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.699 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds