Wall clock time and date at job start Tue Mar 31 2020 13:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32216 * 120.51199 * 2 1 4 4 C 1.31904 * 121.14481 * 180.31294 * 3 2 1 5 5 N 1.31756 * 122.19454 * 359.70565 * 4 3 2 6 6 C 1.32741 * 120.87088 * 359.97438 * 5 4 3 7 7 O 1.35278 * 120.61521 * 179.97438 * 6 5 4 8 8 C 1.39770 * 120.50750 * 179.74181 * 2 1 3 9 9 C 1.47535 * 120.98075 * 359.97298 * 8 2 1 10 10 O 1.21582 * 120.00032 * 269.72447 * 9 8 2 11 11 N 1.34770 * 119.99676 * 89.72131 * 9 8 2 12 12 C 1.46931 * 120.63618 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77718 * 233.62922 * 12 11 9 14 14 C 1.53043 * 109.31320 * 305.36361 * 13 12 11 15 15 H 1.09001 * 109.45924 * 181.38251 * 14 13 12 16 16 N 1.46501 * 109.45791 * 301.34544 * 14 13 12 17 17 C 1.36940 * 119.99730 * 275.06988 * 16 14 13 18 18 H 1.07999 * 120.00071 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00030 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99518 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47309 * 89.99400 * 21 19 17 23 23 H 1.48502 * 109.46993 * 209.99953 * 21 19 17 24 24 H 1.48502 * 109.46818 * 329.99846 * 21 19 17 25 25 C 1.53044 * 109.53891 * 61.36175 * 14 13 12 26 26 H 1.09007 * 109.52085 * 58.60492 * 25 14 13 27 27 C 1.52997 * 109.49688 * 178.68314 * 25 14 13 28 28 C 1.46931 * 120.63069 * 179.97438 * 11 9 8 29 29 H 1.09007 * 109.47002 * 270.25900 * 1 2 3 30 30 H 1.08994 * 109.47216 * 30.25914 * 1 2 3 31 31 H 1.08998 * 109.47456 * 150.25985 * 1 2 3 32 32 H 1.07999 * 118.90191 * 179.73115 * 4 3 2 33 33 H 0.96700 * 114.00242 * 270.01996 * 7 6 5 34 34 H 1.09000 * 109.58042 * 353.41344 * 12 11 9 35 35 H 1.08997 * 109.58502 * 113.83765 * 12 11 9 36 36 H 1.08998 * 109.49692 * 65.31324 * 13 12 11 37 37 H 1.08999 * 109.49604 * 185.41098 * 13 12 11 38 38 H 0.96996 * 120.00226 * 95.06507 * 16 14 13 39 39 H 0.97009 * 119.99388 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.47153 * 179.83973 * 27 25 14 41 41 H 1.09001 * 109.46832 * 59.84164 * 27 25 14 42 42 H 1.09004 * 109.47261 * 299.84145 * 27 25 14 43 43 H 1.09004 * 109.58382 * 6.58087 * 28 11 9 44 44 H 1.09002 * 109.58812 * 246.15959 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 -0.0062 5 7 4.2115 0.0465 -0.0069 6 6 3.6233 -1.1435 -0.0008 7 8 4.3618 -2.2769 -0.0021 8 6 2.2165 -1.2042 0.0054 9 6 1.5123 -2.5006 0.0119 10 8 1.2270 -3.0322 1.0674 11 7 1.1852 -3.0955 -1.1524 12 6 1.5227 -2.4652 -2.4360 13 6 0.2499 -2.3563 -3.2816 14 6 -0.3922 -3.7396 -3.4102 15 1 -1.2847 -3.6692 -4.0319 16 7 0.5612 -4.6646 -4.0281 17 6 0.6663 -4.7295 -5.3919 18 1 0.0462 -4.0992 -6.0120 19 6 1.5692 -5.6063 -5.9774 20 7 2.3246 -6.3749 -5.2217 21 14 1.7122 -5.6955 -7.8378 22 1 2.7344 -4.7240 -8.3029 23 1 2.1150 -7.0677 -8.2380 24 1 0.4007 -5.3658 -8.4513 25 6 -0.7772 -4.2563 -2.0220 26 1 -1.4676 -3.5563 -1.5514 27 6 -1.4486 -5.6246 -2.1546 28 6 0.4843 -4.3868 -1.1622 29 1 -0.3633 0.0046 1.0277 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3634 -0.8923 -0.5098 32 1 4.0087 2.1048 -0.0104 33 1 4.5720 -2.6085 -0.8858 34 1 1.9296 -1.4697 -2.2583 35 1 2.2586 -3.0748 -2.9601 36 1 -0.4499 -1.6738 -2.7994 37 1 0.5026 -1.9789 -4.2724 38 1 1.1179 -5.2309 -3.4712 39 1 2.9559 -6.9873 -5.6309 40 1 -1.7201 -5.9935 -1.1655 41 1 -0.7582 -6.3239 -2.6263 42 1 -2.3459 -5.5314 -2.7665 43 1 0.2062 -4.6593 -0.1441 44 1 1.1357 -5.1530 -1.5827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036143856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:40 Heat of formation + Delta-G solvation = -11.951957 kcal Electronic energy + Delta-G solvation = -28461.835129 eV Core-core repulsion = 24608.119400 eV Total energy + Delta-G solvation = -3853.715729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66755 -39.85090 -37.97037 -37.72585 -34.59551 -34.23581 -32.99945 -31.98253 -31.51311 -29.32885 -28.95460 -26.67985 -25.55587 -24.37905 -23.55950 -23.03725 -21.78388 -20.32332 -19.10964 -18.52445 -18.24484 -17.49947 -17.17258 -16.55974 -16.06536 -15.30715 -14.97457 -14.51760 -14.45216 -14.43569 -14.08348 -13.79969 -13.61427 -13.38892 -13.09139 -12.97351 -12.85942 -12.62551 -12.33135 -12.27699 -11.71601 -11.54340 -11.41855 -11.26953 -10.98128 -10.89890 -10.59971 -10.59777 -10.57977 -10.26479 -9.96274 -9.93629 -9.65934 -9.64406 -9.49617 -9.01682 -8.41636 -7.07295 -5.87589 -3.16463 0.38444 0.65262 2.45894 2.95272 3.10075 3.35553 3.36188 3.42077 3.43435 3.70504 3.99779 4.32362 4.50010 4.70877 4.87347 5.02293 5.05395 5.18925 5.24780 5.28515 5.36763 5.42393 5.47593 5.60856 5.62416 5.68967 5.80265 5.93606 5.95586 5.96428 6.11643 6.21114 6.27339 6.39499 6.47460 6.56573 6.58239 6.64729 6.80525 6.89090 7.11304 7.46456 7.60921 7.73273 8.12090 8.30821 9.42808 9.98223 10.33245 11.34607 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.004222 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.710937 B = 6629.776234 C = 7275.865424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.225 3.775 3 N -0.526 5.526 4 C 0.331 3.669 5 N -0.541 5.541 6 C 0.397 3.603 7 O -0.468 6.468 8 C -0.238 4.238 9 C 0.575 3.425 10 O -0.532 6.532 11 N -0.591 5.591 12 C 0.115 3.885 13 C -0.148 4.148 14 C 0.178 3.822 15 H 0.053 0.947 16 N -0.718 5.718 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.108 4.108 26 H 0.066 0.934 27 C -0.137 4.137 28 C 0.119 3.881 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 12.177 8.713 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 N -0.242 5.242 4 C 0.043 3.957 5 N -0.266 5.266 6 C 0.210 3.790 7 O -0.276 6.276 8 C -0.247 4.247 9 C 0.360 3.640 10 O -0.409 6.409 11 N -0.322 5.322 12 C -0.008 4.008 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.071 0.929 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.128 4.128 26 H 0.085 0.915 27 C -0.195 4.195 28 C -0.003 4.003 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.222 0.778 33 H 0.276 0.724 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.410 12.677 9.654 16.116 hybrid contribution 0.298 -1.033 -1.470 1.821 sum -2.111 11.644 8.184 14.389 Atomic orbital electron populations 1.20924 0.86989 1.04749 1.04429 1.21780 0.97741 0.85949 0.86656 1.68281 1.10204 1.29333 1.16383 1.24945 0.86262 0.96111 0.88345 1.68056 1.42625 0.98659 1.17260 1.19379 0.85572 0.85988 0.88102 1.84655 1.72478 1.35828 1.34649 1.21730 0.95173 0.97037 1.10766 1.17558 0.78930 0.83419 0.84128 1.90795 1.54681 1.64718 1.30698 1.48124 1.56600 1.22018 1.05485 1.21719 0.99272 0.96750 0.83027 1.22533 0.96303 1.00568 0.99560 1.20221 0.93063 0.88599 0.91324 0.92909 1.42473 1.44444 1.45131 1.04022 1.19207 1.17127 1.17820 0.82918 0.91245 1.24697 0.99244 0.99112 0.97538 1.69646 1.27067 1.27535 1.33737 0.86248 0.77624 0.76904 0.85724 1.21831 1.21833 1.20816 1.21721 0.95902 0.98315 0.96861 0.91510 1.21667 1.00866 0.96497 1.00509 1.21751 0.93616 0.83754 1.01199 0.88849 0.88967 0.89714 0.77816 0.72360 0.92312 0.89395 0.93176 0.90597 0.78100 0.93468 0.93670 0.90979 0.92709 0.89508 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.85 36.00 0.35 -0.79 16 2 C 0.22 2.79 6.71 -81.86 -0.55 2.24 16 3 N -0.53 -6.18 10.36 -10.52 -0.11 -6.29 16 4 C 0.33 3.56 12.27 -92.09 -1.13 2.43 16 5 N -0.54 -7.00 10.45 -14.32 -0.15 -7.15 16 6 C 0.40 5.53 7.85 -16.19 -0.13 5.41 16 7 O -0.47 -6.29 13.10 -17.53 -0.23 -6.52 16 8 C -0.24 -3.33 3.68 -104.56 -0.38 -3.72 16 9 C 0.57 9.01 5.40 -12.47 -0.07 8.94 16 10 O -0.53 -10.02 16.52 5.29 0.09 -9.93 16 11 N -0.59 -8.76 2.97 -173.97 -0.52 -9.28 16 12 C 0.11 1.67 6.08 -3.71 -0.02 1.65 16 13 C -0.15 -2.22 5.78 -26.61 -0.15 -2.37 16 14 C 0.18 3.04 2.53 -67.89 -0.17 2.87 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -15.40 3.64 -53.38 -0.19 -15.59 16 17 C -0.24 -5.94 9.93 -15.06 -0.15 -6.09 16 18 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -26.00 13.06 55.49 0.72 -25.28 16 21 Si 0.90 21.08 29.55 -169.99 -5.02 16.06 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C -0.11 -1.60 2.67 -90.48 -0.24 -1.84 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 C -0.14 -2.04 9.06 37.16 0.34 -1.70 16 28 C 0.12 1.84 5.42 -3.69 -0.02 1.82 16 29 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.90 7.18 -51.93 -0.37 0.53 16 32 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.41 3.92 9.06 45.56 0.41 4.34 16 34 H 0.06 0.78 6.22 -51.93 -0.32 0.45 16 35 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.38 8.85 5.92 -40.82 -0.24 8.61 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.26 7.53 -51.93 -0.39 0.87 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 44 H 0.08 1.37 6.64 -51.93 -0.34 1.03 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -31.16 360.24 -7.78 -38.94 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.37 Total: 11.12 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -2.42 Total: 8.48 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.25 Total: -63.58 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.14 Total: -16.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.16 -7.78 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.983 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds