Wall clock time and date at job start Tue Mar 31 2020 13:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32216 * 120.51199 * 2 1 4 4 C 1.31904 * 121.14481 * 180.31294 * 3 2 1 5 5 N 1.31756 * 122.19454 * 359.70565 * 4 3 2 6 6 C 1.32741 * 120.87088 * 359.97438 * 5 4 3 7 7 O 1.35278 * 120.61521 * 179.97438 * 6 5 4 8 8 C 1.39770 * 120.50750 * 179.74181 * 2 1 3 9 9 C 1.47535 * 120.98075 * 359.97298 * 8 2 1 10 10 O 1.21582 * 120.00032 * 269.72447 * 9 8 2 11 11 N 1.34770 * 119.99676 * 89.72131 * 9 8 2 12 12 C 1.46931 * 120.63618 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77718 * 233.62922 * 12 11 9 14 14 C 1.53043 * 109.31320 * 305.36361 * 13 12 11 15 15 H 1.09001 * 109.45924 * 181.38251 * 14 13 12 16 16 N 1.46501 * 109.45791 * 301.34544 * 14 13 12 17 17 C 1.36940 * 119.99730 * 275.06988 * 16 14 13 18 18 H 1.07999 * 120.00071 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00030 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99518 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47309 * 89.99400 * 21 19 17 23 23 H 1.48502 * 109.46993 * 209.99953 * 21 19 17 24 24 H 1.48502 * 109.46818 * 329.99846 * 21 19 17 25 25 C 1.53044 * 109.53891 * 61.36175 * 14 13 12 26 26 H 1.09007 * 109.52085 * 58.60492 * 25 14 13 27 27 C 1.52997 * 109.49688 * 178.68314 * 25 14 13 28 28 C 1.46931 * 120.63069 * 179.97438 * 11 9 8 29 29 H 1.09007 * 109.47002 * 270.25900 * 1 2 3 30 30 H 1.08994 * 109.47216 * 30.25914 * 1 2 3 31 31 H 1.08998 * 109.47456 * 150.25985 * 1 2 3 32 32 H 1.07999 * 118.90191 * 179.73115 * 4 3 2 33 33 H 0.96700 * 114.00242 * 270.01996 * 7 6 5 34 34 H 1.09000 * 109.58042 * 353.41344 * 12 11 9 35 35 H 1.08997 * 109.58502 * 113.83765 * 12 11 9 36 36 H 1.08998 * 109.49692 * 65.31324 * 13 12 11 37 37 H 1.08999 * 109.49604 * 185.41098 * 13 12 11 38 38 H 0.96996 * 120.00226 * 95.06507 * 16 14 13 39 39 H 0.97009 * 119.99388 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.47153 * 179.83973 * 27 25 14 41 41 H 1.09001 * 109.46832 * 59.84164 * 27 25 14 42 42 H 1.09004 * 109.47261 * 299.84145 * 27 25 14 43 43 H 1.09004 * 109.58382 * 6.58087 * 28 11 9 44 44 H 1.09002 * 109.58812 * 246.15959 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 -0.0062 5 7 4.2115 0.0465 -0.0069 6 6 3.6233 -1.1435 -0.0008 7 8 4.3618 -2.2769 -0.0021 8 6 2.2165 -1.2042 0.0054 9 6 1.5123 -2.5006 0.0119 10 8 1.2270 -3.0322 1.0674 11 7 1.1852 -3.0955 -1.1524 12 6 1.5227 -2.4652 -2.4360 13 6 0.2499 -2.3563 -3.2816 14 6 -0.3922 -3.7396 -3.4102 15 1 -1.2847 -3.6692 -4.0319 16 7 0.5612 -4.6646 -4.0281 17 6 0.6663 -4.7295 -5.3919 18 1 0.0462 -4.0992 -6.0120 19 6 1.5692 -5.6063 -5.9774 20 7 2.3246 -6.3749 -5.2217 21 14 1.7122 -5.6955 -7.8378 22 1 2.7344 -4.7240 -8.3029 23 1 2.1150 -7.0677 -8.2380 24 1 0.4007 -5.3658 -8.4513 25 6 -0.7772 -4.2563 -2.0220 26 1 -1.4676 -3.5563 -1.5514 27 6 -1.4486 -5.6246 -2.1546 28 6 0.4843 -4.3868 -1.1622 29 1 -0.3633 0.0046 1.0277 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3634 -0.8923 -0.5098 32 1 4.0087 2.1048 -0.0104 33 1 4.5720 -2.6085 -0.8858 34 1 1.9296 -1.4697 -2.2583 35 1 2.2586 -3.0748 -2.9601 36 1 -0.4499 -1.6738 -2.7994 37 1 0.5026 -1.9789 -4.2724 38 1 1.1179 -5.2309 -3.4712 39 1 2.9559 -6.9873 -5.6309 40 1 -1.7201 -5.9935 -1.1655 41 1 -0.7582 -6.3239 -2.6263 42 1 -2.3459 -5.5314 -2.7665 43 1 0.2062 -4.6593 -0.1441 44 1 1.1357 -5.1530 -1.5827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036143856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:39 Heat of formation + Delta-G solvation = -34.829133 kcal Electronic energy + Delta-G solvation = -28462.827157 eV Core-core repulsion = 24608.119400 eV Total energy + Delta-G solvation = -3854.707758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.66864 -41.06686 -39.14882 -38.89013 -35.95317 -35.35726 -34.47710 -33.12722 -32.86487 -30.95353 -29.86924 -27.86048 -26.88094 -25.67332 -25.14991 -23.96921 -23.08489 -21.51971 -20.08864 -19.85142 -19.28079 -19.20566 -18.46697 -17.61628 -17.19168 -16.62304 -16.25446 -16.00973 -15.80010 -15.53500 -15.35470 -15.13063 -14.85994 -14.48612 -14.33136 -14.20707 -13.90592 -13.75299 -13.62078 -13.14833 -13.03097 -12.98347 -12.85639 -12.69855 -12.49920 -12.39545 -12.10673 -11.99419 -11.91144 -11.57623 -11.50283 -11.18274 -11.09358 -10.88017 -10.62399 -10.50919 -9.72084 -8.90972 -7.87720 -5.13239 -0.56848 -0.29696 1.24669 1.49943 1.51765 1.58414 1.79043 2.12993 2.42953 2.60768 2.87794 3.09765 3.20616 3.46675 3.73553 3.80576 3.88611 3.98021 4.04290 4.08113 4.17933 4.28225 4.37141 4.51707 4.52918 4.58198 4.64628 4.71184 4.84281 4.88086 4.94003 5.02653 5.13397 5.15763 5.20464 5.27100 5.30753 5.48181 5.59411 5.63148 5.64104 6.22059 6.24051 6.34451 6.82371 6.88746 7.42676 8.18918 8.41852 9.35330 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.004222 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.710937 B = 6629.776234 C = 7275.865424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.228 3.772 3 N -0.528 5.528 4 C 0.337 3.663 5 N -0.555 5.555 6 C 0.390 3.610 7 O -0.483 6.483 8 C -0.260 4.260 9 C 0.583 3.417 10 O -0.567 6.567 11 N -0.584 5.584 12 C 0.125 3.875 13 C -0.140 4.140 14 C 0.172 3.828 15 H 0.051 0.949 16 N -0.724 5.724 17 C -0.224 4.224 18 H 0.075 0.925 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.959 3.041 22 H -0.292 1.292 23 H -0.304 1.304 24 H -0.272 1.272 25 C -0.097 4.097 26 H 0.093 0.907 27 C -0.132 4.132 28 C 0.123 3.877 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.427 0.573 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.374 0.626 39 H 0.247 0.753 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 14.753 8.895 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 N -0.244 5.244 4 C 0.051 3.949 5 N -0.281 5.281 6 C 0.202 3.798 7 O -0.294 6.294 8 C -0.269 4.269 9 C 0.369 3.631 10 O -0.446 6.446 11 N -0.315 5.315 12 C 0.003 3.997 13 C -0.181 4.181 14 C 0.064 3.936 15 H 0.069 0.931 16 N -0.365 5.365 17 C -0.356 4.356 18 H 0.093 0.907 19 C -0.262 4.262 20 N -0.619 5.619 21 Si 0.790 3.210 22 H -0.220 1.220 23 H -0.232 1.232 24 H -0.197 1.197 25 C -0.117 4.117 26 H 0.111 0.889 27 C -0.190 4.190 28 C 0.001 3.999 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.261 0.739 33 H 0.291 0.709 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.208 0.792 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.693 15.301 9.815 18.550 hybrid contribution 0.656 -1.746 -1.466 2.372 sum -3.037 13.556 8.349 16.208 Atomic orbital electron populations 1.21014 0.85356 1.05466 1.05160 1.22163 0.98851 0.85475 0.85325 1.68417 1.10573 1.28678 1.16719 1.25823 0.86207 0.96892 0.86001 1.68155 1.42968 0.98773 1.18191 1.19551 0.85711 0.86399 0.88121 1.84610 1.72574 1.36179 1.35989 1.21625 0.95207 0.96666 1.13374 1.17734 0.78155 0.83734 0.83463 1.90771 1.56155 1.65882 1.31834 1.48072 1.56215 1.21610 1.05568 1.21572 0.98599 0.97020 0.82498 1.22407 0.96730 0.99428 0.99521 1.20454 0.92077 0.88904 0.92191 0.93060 1.42589 1.45071 1.45871 1.02990 1.19547 1.15456 1.16099 0.84512 0.90681 1.25314 1.00158 1.00003 1.00751 1.69791 1.28368 1.28901 1.34826 0.85352 0.77713 0.75907 0.82047 1.21956 1.23155 1.19718 1.21648 0.95832 0.98813 0.95373 0.88924 1.21606 1.00173 0.95778 1.01476 1.21630 0.93586 0.83648 1.01084 0.88057 0.86917 0.90176 0.73871 0.70892 0.90453 0.92179 0.90052 0.91445 0.79247 0.94454 0.91675 0.94212 0.92060 0.89492 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.85 71.24 0.70 -1.23 16 2 C 0.23 5.11 6.71 42.87 0.29 5.40 16 3 N -0.53 -10.85 10.36 -187.21 -1.94 -12.79 16 4 C 0.34 6.31 12.27 180.86 2.22 8.52 16 5 N -0.56 -13.42 10.45 -312.05 -3.26 -16.68 16 6 C 0.39 10.51 7.85 85.19 0.67 11.18 16 7 O -0.48 -13.01 13.10 -85.63 -1.12 -14.13 16 8 C -0.26 -6.94 3.68 -19.83 -0.07 -7.01 16 9 C 0.58 17.82 5.40 86.70 0.47 18.29 16 10 O -0.57 -21.17 16.52 -3.97 -0.07 -21.24 16 11 N -0.58 -16.90 2.97 -822.60 -2.44 -19.34 16 12 C 0.13 3.52 6.08 86.36 0.53 4.05 16 13 C -0.14 -3.89 5.78 30.67 0.18 -3.71 16 14 C 0.17 5.64 2.53 45.02 0.11 5.75 16 15 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 16 N -0.72 -31.17 3.64 -322.80 -1.17 -32.34 16 17 C -0.22 -11.08 9.93 84.03 0.83 -10.24 16 18 H 0.08 3.58 7.83 -2.91 -0.02 3.56 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 20 N -0.97 -55.55 13.06 21.65 0.28 -55.27 16 21 Si 0.96 43.76 29.55 68.60 2.03 45.79 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C -0.10 -2.73 2.67 -10.71 -0.03 -2.76 16 26 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 27 C -0.13 -3.80 9.06 71.98 0.65 -3.15 16 28 C 0.12 3.78 5.42 86.37 0.47 4.25 16 29 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.45 7.18 -2.39 -0.02 1.44 16 32 H 0.25 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.43 8.29 9.06 -74.06 -0.67 7.61 16 34 H 0.08 1.91 6.22 -2.39 -0.01 1.90 16 35 H 0.06 2.06 7.74 -2.39 -0.02 2.04 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.37 17.74 5.92 -92.71 -0.55 17.19 16 39 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.40 7.53 -2.39 -0.02 1.38 16 42 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.09 2.70 7.00 -2.38 -0.02 2.68 16 44 H 0.06 2.00 6.64 -2.39 -0.02 1.98 16 Total: -1.00 -67.56 360.24 -0.39 -67.95 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.17 Total: 31.96 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 7.48 Total: 26.09 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -8.54 Total: -136.42 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -1.19 Total: -35.37 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.56 -0.39 -67.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.120 kcal (2) G-P(sol) polarization free energy of solvation -67.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds