Wall clock time and date at job start Tue Mar 31 2020 13:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32222 * 120.50623 * 2 1 4 4 C 1.31911 * 121.13954 * 180.31275 * 3 2 1 5 5 N 1.31755 * 122.19543 * 359.70205 * 4 3 2 6 6 C 1.32750 * 120.87501 * 0.02562 * 5 4 3 7 7 O 1.35271 * 120.61725 * 179.97438 * 6 5 4 8 8 C 1.39765 * 120.50985 * 179.74017 * 2 1 3 9 9 C 1.47538 * 120.98116 * 359.97438 * 8 2 1 10 10 O 1.21584 * 119.99686 * 269.72189 * 9 8 2 11 11 N 1.34774 * 120.00018 * 89.72260 * 9 8 2 12 12 C 1.46995 * 120.61446 * 359.97438 * 11 9 8 13 13 C 1.53196 * 108.73708 * 126.41262 * 12 11 9 14 14 C 1.53039 * 109.33748 * 54.62190 * 13 12 11 15 15 H 1.08997 * 109.45914 * 178.59648 * 14 13 12 16 16 N 1.46503 * 109.45768 * 58.64143 * 14 13 12 17 17 C 1.36938 * 119.99935 * 85.00133 * 16 14 13 18 18 H 1.07998 * 120.00492 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99508 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00272 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99652 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47191 * 60.00232 * 21 19 17 23 23 H 1.48496 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47202 * 300.00354 * 21 19 17 25 25 C 1.53042 * 109.54198 * 298.62051 * 14 13 12 26 26 H 1.08998 * 109.49487 * 301.38422 * 25 14 13 27 27 C 1.52996 * 109.50066 * 181.31673 * 25 14 13 28 28 C 1.46925 * 120.62957 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47200 * 270.25768 * 1 2 3 30 30 H 1.08997 * 109.47540 * 30.26081 * 1 2 3 31 31 H 1.09004 * 109.46927 * 150.26184 * 1 2 3 32 32 H 1.07994 * 118.90517 * 179.72604 * 4 3 2 33 33 H 0.96701 * 114.00460 * 270.01797 * 7 6 5 34 34 H 1.09001 * 109.63157 * 6.62673 * 12 11 9 35 35 H 1.08996 * 109.58534 * 246.17173 * 12 11 9 36 36 H 1.09002 * 109.49815 * 294.65503 * 13 12 11 37 37 H 1.09000 * 109.49595 * 174.58900 * 13 12 11 38 38 H 0.96999 * 120.00180 * 264.99467 * 16 14 13 39 39 H 0.96998 * 119.99837 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.46712 * 59.99827 * 27 25 14 41 41 H 1.09002 * 109.47174 * 179.97438 * 27 25 14 42 42 H 1.09000 * 109.46768 * 300.00026 * 27 25 14 43 43 H 1.09004 * 109.58683 * 113.82152 * 28 11 9 44 44 H 1.08994 * 109.70376 * 353.46005 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 -0.0062 5 7 4.2115 0.0467 -0.0068 6 6 3.6234 -1.1435 -0.0017 7 8 4.3618 -2.2768 -0.0029 8 6 2.2165 -1.2041 0.0055 9 6 1.5123 -2.5006 0.0119 10 8 1.2271 -3.0322 1.0675 11 7 1.1853 -3.0956 -1.1523 12 6 1.5231 -2.4647 -2.4363 13 6 2.3024 -3.4708 -3.2890 14 6 1.4913 -4.7622 -3.4170 15 1 2.0327 -5.4705 -4.0440 16 7 0.1928 -4.4646 -4.0266 17 6 0.0729 -4.4091 -5.3896 18 1 0.9356 -4.5843 -6.0152 19 6 -1.1576 -4.1275 -5.9672 20 7 -2.2089 -3.9135 -5.2048 21 14 -1.3210 -4.0511 -7.8264 22 1 -0.9420 -5.3625 -8.4110 23 1 -2.7265 -3.7354 -8.1873 24 1 -0.4243 -2.9940 -8.3591 25 6 1.2755 -5.3709 -2.0295 26 1 2.2415 -5.5702 -1.5655 27 6 0.4929 -6.6788 -2.1615 28 6 0.4835 -4.3864 -1.1620 29 1 -0.3634 0.0046 1.0277 30 1 -0.3634 0.8876 -0.5178 31 1 -0.3633 -0.8924 -0.5098 32 1 4.0087 2.1049 -0.0105 33 1 4.5727 -2.6080 -0.8866 34 1 2.1376 -1.5818 -2.2600 35 1 0.6080 -2.1780 -2.9544 36 1 3.2587 -3.6875 -2.8130 37 1 2.4761 -3.0506 -4.2797 38 1 -0.5821 -4.3069 -3.4648 39 1 -3.0686 -3.7164 -5.6084 40 1 1.0549 -7.3775 -2.7812 41 1 0.3399 -7.1121 -1.1731 42 1 -0.4735 -6.4788 -2.6245 43 1 -0.5161 -4.2557 -1.5767 44 1 0.4098 -4.7723 -0.1454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036143858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:43 Heat of formation + Delta-G solvation = -11.805900 kcal Electronic energy + Delta-G solvation = -28460.218477 eV Core-core repulsion = 24606.509082 eV Total energy + Delta-G solvation = -3853.709395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67090 -39.84397 -37.99101 -37.76418 -34.58257 -34.23171 -32.99849 -31.97518 -31.53387 -29.29737 -28.95302 -26.68380 -25.54799 -24.37983 -23.55845 -23.04170 -21.79252 -20.32202 -19.15275 -18.60409 -18.14289 -17.51211 -17.18560 -16.61395 -16.03575 -15.30467 -14.95228 -14.54270 -14.49544 -14.39496 -14.09430 -13.79672 -13.57670 -13.39035 -13.06627 -13.02967 -12.78115 -12.60906 -12.33349 -12.26111 -11.71527 -11.55638 -11.42949 -11.28293 -10.96622 -10.91067 -10.59893 -10.59388 -10.57924 -10.29576 -9.96761 -9.93674 -9.66338 -9.64432 -9.49561 -9.01532 -8.41855 -7.07447 -5.87172 -3.16156 0.37992 0.65011 2.45602 2.94638 3.06909 3.35745 3.36382 3.41969 3.42899 3.72842 3.99945 4.32189 4.50245 4.70649 4.86681 5.01587 5.07259 5.19739 5.25407 5.35336 5.36883 5.47424 5.47513 5.61299 5.64201 5.70201 5.80422 5.94714 5.95945 5.99695 6.11699 6.18674 6.26702 6.39459 6.46492 6.54993 6.58200 6.63765 6.79814 6.89031 7.04705 7.46266 7.60472 7.73076 8.12069 8.31174 9.43114 9.98342 10.33395 11.34986 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004210 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.743562 B = 6648.827993 C = 7269.476565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.227 3.773 3 N -0.524 5.524 4 C 0.331 3.669 5 N -0.542 5.542 6 C 0.395 3.605 7 O -0.467 6.467 8 C -0.237 4.237 9 C 0.575 3.425 10 O -0.532 6.532 11 N -0.591 5.591 12 C 0.115 3.885 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.053 0.947 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.009 4.009 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.108 4.108 26 H 0.067 0.933 27 C -0.137 4.137 28 C 0.119 3.881 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.206 0.794 33 H 0.411 0.589 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.297 5.645 8.655 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 N -0.240 5.240 4 C 0.043 3.957 5 N -0.267 5.267 6 C 0.207 3.793 7 O -0.275 6.275 8 C -0.246 4.246 9 C 0.360 3.640 10 O -0.409 6.409 11 N -0.322 5.322 12 C -0.007 4.007 13 C -0.191 4.191 14 C 0.068 3.932 15 H 0.071 0.929 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.128 4.128 26 H 0.085 0.915 27 C -0.195 4.195 28 C -0.003 4.003 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.222 0.778 33 H 0.272 0.728 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.576 6.161 9.600 14.894 hybrid contribution -0.459 -0.624 -1.474 1.665 sum 9.117 5.537 8.126 13.409 Atomic orbital electron populations 1.20940 0.86772 1.05064 1.04471 1.21838 0.97861 0.85911 0.86302 1.68301 1.10156 1.29376 1.16201 1.24950 0.86299 0.96074 0.88355 1.68042 1.42624 0.98642 1.17398 1.19339 0.85514 0.85928 0.88485 1.84667 1.72533 1.35984 1.34310 1.21730 0.95130 0.97067 1.10713 1.17559 0.78860 0.83485 0.84135 1.90796 1.54732 1.64669 1.30690 1.48136 1.56690 1.21925 1.05481 1.21733 1.01277 0.94707 0.82983 1.22555 0.97598 0.99345 0.99559 1.20207 0.88757 0.92770 0.91428 0.92911 1.42462 1.05044 1.84452 1.04066 1.19158 0.94420 1.40718 0.82935 0.91311 1.24694 0.95769 1.02511 0.97523 1.69625 0.99867 1.54659 1.33799 0.86324 0.76674 0.77776 0.85701 1.21315 1.21749 1.21372 1.21723 0.98910 0.95386 0.96777 0.91467 1.21664 1.01732 0.95633 1.00498 1.21750 0.95749 0.81624 1.01192 0.88772 0.88816 0.89558 0.77804 0.72848 0.92440 0.89117 0.93536 0.90532 0.78078 0.93398 0.92721 0.93668 0.90979 0.90238 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.85 36.00 0.35 -0.95 16 2 C 0.23 2.94 6.86 -81.86 -0.56 2.38 16 3 N -0.52 -6.38 10.36 -10.53 -0.11 -6.49 16 4 C 0.33 3.57 12.27 -92.09 -1.13 2.44 16 5 N -0.54 -6.81 10.45 -14.32 -0.15 -6.96 16 6 C 0.40 5.30 7.72 -16.18 -0.12 5.17 16 7 O -0.47 -5.76 13.10 -17.51 -0.23 -5.99 16 8 C -0.24 -3.33 3.67 -104.56 -0.38 -3.72 16 9 C 0.57 9.02 5.40 -12.47 -0.07 8.95 16 10 O -0.53 -10.02 16.52 5.29 0.09 -9.93 16 11 N -0.59 -8.77 2.97 -173.90 -0.52 -9.29 16 12 C 0.12 1.68 6.08 -3.67 -0.02 1.66 16 13 C -0.15 -2.19 5.78 -26.61 -0.15 -2.35 16 14 C 0.18 3.04 2.53 -67.89 -0.17 2.87 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -15.40 3.64 -53.38 -0.19 -15.59 16 17 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 18 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 21 Si 0.90 21.07 29.55 -169.99 -5.02 16.04 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.11 -1.62 2.67 -90.46 -0.24 -1.86 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 C -0.14 -2.05 9.05 37.16 0.34 -1.72 16 28 C 0.12 1.84 5.42 -3.67 -0.02 1.82 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.07 7.18 -51.93 -0.37 0.70 16 32 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.41 3.27 9.06 45.56 0.41 3.68 16 34 H 0.06 0.76 6.24 -51.93 -0.32 0.43 16 35 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.38 8.85 5.92 -40.82 -0.24 8.61 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.26 7.54 -51.93 -0.39 0.87 16 43 H 0.08 1.36 6.64 -51.93 -0.34 1.01 16 44 H 0.09 1.37 7.01 -51.93 -0.36 1.00 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -31.03 360.29 -7.79 -38.82 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.37 Total: 10.96 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.43 Total: 8.25 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.25 Total: -63.58 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.14 Total: -15.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.03 -7.79 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.014 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds