Wall clock time and date at job start Tue Mar 31 2020 13:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32222 * 120.50623 * 2 1 4 4 C 1.31911 * 121.13954 * 180.31275 * 3 2 1 5 5 N 1.31755 * 122.19543 * 359.70205 * 4 3 2 6 6 C 1.32750 * 120.87501 * 0.02562 * 5 4 3 7 7 O 1.35271 * 120.61725 * 179.97438 * 6 5 4 8 8 C 1.39765 * 120.50985 * 179.74017 * 2 1 3 9 9 C 1.47538 * 120.98116 * 359.97438 * 8 2 1 10 10 O 1.21584 * 119.99686 * 269.72189 * 9 8 2 11 11 N 1.34774 * 120.00018 * 89.72260 * 9 8 2 12 12 C 1.46995 * 120.61446 * 359.97438 * 11 9 8 13 13 C 1.53196 * 108.73708 * 126.41262 * 12 11 9 14 14 C 1.53039 * 109.33748 * 54.62190 * 13 12 11 15 15 H 1.08997 * 109.45914 * 178.59648 * 14 13 12 16 16 N 1.46503 * 109.45768 * 58.64143 * 14 13 12 17 17 C 1.36938 * 119.99935 * 85.00133 * 16 14 13 18 18 H 1.07998 * 120.00492 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99508 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00272 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99652 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47191 * 60.00232 * 21 19 17 23 23 H 1.48496 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47202 * 300.00354 * 21 19 17 25 25 C 1.53042 * 109.54198 * 298.62051 * 14 13 12 26 26 H 1.08998 * 109.49487 * 301.38422 * 25 14 13 27 27 C 1.52996 * 109.50066 * 181.31673 * 25 14 13 28 28 C 1.46925 * 120.62957 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47200 * 270.25768 * 1 2 3 30 30 H 1.08997 * 109.47540 * 30.26081 * 1 2 3 31 31 H 1.09004 * 109.46927 * 150.26184 * 1 2 3 32 32 H 1.07994 * 118.90517 * 179.72604 * 4 3 2 33 33 H 0.96701 * 114.00460 * 270.01797 * 7 6 5 34 34 H 1.09001 * 109.63157 * 6.62673 * 12 11 9 35 35 H 1.08996 * 109.58534 * 246.17173 * 12 11 9 36 36 H 1.09002 * 109.49815 * 294.65503 * 13 12 11 37 37 H 1.09000 * 109.49595 * 174.58900 * 13 12 11 38 38 H 0.96999 * 120.00180 * 264.99467 * 16 14 13 39 39 H 0.96998 * 119.99837 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.46712 * 59.99827 * 27 25 14 41 41 H 1.09002 * 109.47174 * 179.97438 * 27 25 14 42 42 H 1.09000 * 109.46768 * 300.00026 * 27 25 14 43 43 H 1.09004 * 109.58683 * 113.82152 * 28 11 9 44 44 H 1.08994 * 109.70376 * 353.46005 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 -0.0062 5 7 4.2115 0.0467 -0.0068 6 6 3.6234 -1.1435 -0.0017 7 8 4.3618 -2.2768 -0.0029 8 6 2.2165 -1.2041 0.0055 9 6 1.5123 -2.5006 0.0119 10 8 1.2271 -3.0322 1.0675 11 7 1.1853 -3.0956 -1.1523 12 6 1.5231 -2.4647 -2.4363 13 6 2.3024 -3.4708 -3.2890 14 6 1.4913 -4.7622 -3.4170 15 1 2.0327 -5.4705 -4.0440 16 7 0.1928 -4.4646 -4.0266 17 6 0.0729 -4.4091 -5.3896 18 1 0.9356 -4.5843 -6.0152 19 6 -1.1576 -4.1275 -5.9672 20 7 -2.2089 -3.9135 -5.2048 21 14 -1.3210 -4.0511 -7.8264 22 1 -0.9420 -5.3625 -8.4110 23 1 -2.7265 -3.7354 -8.1873 24 1 -0.4243 -2.9940 -8.3591 25 6 1.2755 -5.3709 -2.0295 26 1 2.2415 -5.5702 -1.5655 27 6 0.4929 -6.6788 -2.1615 28 6 0.4835 -4.3864 -1.1620 29 1 -0.3634 0.0046 1.0277 30 1 -0.3634 0.8876 -0.5178 31 1 -0.3633 -0.8924 -0.5098 32 1 4.0087 2.1049 -0.0105 33 1 4.5727 -2.6080 -0.8866 34 1 2.1376 -1.5818 -2.2600 35 1 0.6080 -2.1780 -2.9544 36 1 3.2587 -3.6875 -2.8130 37 1 2.4761 -3.0506 -4.2797 38 1 -0.5821 -4.3069 -3.4648 39 1 -3.0686 -3.7164 -5.6084 40 1 1.0549 -7.3775 -2.7812 41 1 0.3399 -7.1121 -1.1731 42 1 -0.4735 -6.4788 -2.6245 43 1 -0.5161 -4.2557 -1.5767 44 1 0.4098 -4.7723 -0.1454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036143858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:43 Heat of formation + Delta-G solvation = -34.552602 kcal Electronic energy + Delta-G solvation = -28461.204848 eV Core-core repulsion = 24606.509082 eV Total energy + Delta-G solvation = -3854.695766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67028 -41.06066 -39.13831 -38.89268 -35.94758 -35.36316 -34.47633 -33.10827 -32.89923 -30.94362 -29.92088 -27.87105 -26.87727 -25.66166 -25.15533 -23.98684 -23.09498 -21.52100 -20.08468 -19.88957 -19.25847 -19.16188 -18.49669 -17.64108 -17.15654 -16.64811 -16.20698 -15.97272 -15.85636 -15.54741 -15.38141 -15.10319 -14.87092 -14.50223 -14.32520 -14.23927 -13.94968 -13.74818 -13.62704 -13.18620 -13.04882 -12.98101 -12.83006 -12.69583 -12.50245 -12.39497 -12.15851 -11.99349 -11.92046 -11.57787 -11.51065 -11.18690 -11.09808 -10.87217 -10.63077 -10.50823 -9.72533 -8.90861 -7.87050 -5.12725 -0.56389 -0.30743 1.24768 1.51437 1.52143 1.57682 1.78690 2.12896 2.42194 2.61245 2.85552 3.08644 3.20221 3.46979 3.73494 3.79621 3.87170 3.97451 4.03019 4.07795 4.17146 4.26145 4.36424 4.46957 4.51584 4.55703 4.60424 4.70713 4.83525 4.85742 4.91738 5.01991 5.11426 5.14538 5.19423 5.24263 5.29491 5.47568 5.59001 5.62630 5.63428 6.23190 6.28260 6.34907 6.81994 6.88625 7.43157 8.19210 8.42245 9.35847 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004210 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.743562 B = 6648.827993 C = 7269.476565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.225 3.775 3 N -0.531 5.531 4 C 0.337 3.663 5 N -0.551 5.551 6 C 0.398 3.602 7 O -0.476 6.476 8 C -0.259 4.259 9 C 0.583 3.417 10 O -0.567 6.567 11 N -0.584 5.584 12 C 0.126 3.874 13 C -0.142 4.142 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.724 5.724 17 C -0.227 4.227 18 H 0.075 0.925 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.959 3.041 22 H -0.283 1.283 23 H -0.303 1.303 24 H -0.281 1.281 25 C -0.097 4.097 26 H 0.090 0.910 27 C -0.132 4.132 28 C 0.123 3.877 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.428 0.572 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.374 0.626 39 H 0.247 0.753 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 6.378 8.821 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 N -0.247 5.247 4 C 0.051 3.949 5 N -0.276 5.276 6 C 0.210 3.790 7 O -0.287 6.287 8 C -0.269 4.269 9 C 0.369 3.631 10 O -0.446 6.446 11 N -0.315 5.315 12 C 0.004 3.996 13 C -0.182 4.182 14 C 0.064 3.936 15 H 0.069 0.931 16 N -0.365 5.365 17 C -0.359 4.359 18 H 0.093 0.907 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.790 3.210 22 H -0.210 1.210 23 H -0.230 1.230 24 H -0.207 1.207 25 C -0.117 4.117 26 H 0.108 0.892 27 C -0.190 4.190 28 C 0.001 3.999 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.262 0.738 33 H 0.292 0.708 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.208 0.792 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.039 6.885 9.741 16.948 hybrid contribution -1.106 -0.846 -1.469 2.024 sum 10.933 6.039 8.272 14.981 Atomic orbital electron populations 1.20955 0.86262 1.04943 1.04962 1.22034 0.98421 0.85980 0.85697 1.68403 1.10861 1.28689 1.16768 1.25831 0.85978 0.97088 0.85969 1.68177 1.42650 0.98688 1.18114 1.19433 0.85270 0.86538 0.87800 1.84626 1.72275 1.35800 1.35981 1.21608 0.95575 0.96306 1.13362 1.17742 0.78167 0.83736 0.83468 1.90772 1.56261 1.65789 1.31828 1.48085 1.56235 1.21578 1.05578 1.21579 1.00127 0.95445 0.82457 1.22434 0.98654 0.97579 0.99563 1.20441 0.86950 0.94007 0.92199 0.93083 1.42575 1.06571 1.84347 1.03025 1.19507 0.94122 1.37719 0.84531 0.90721 1.25316 0.95947 1.04113 1.00756 1.69773 0.99949 1.57192 1.34888 0.85426 0.75816 0.77789 0.81974 1.20971 1.23002 1.20729 1.21648 0.99787 0.94874 0.95385 0.89166 1.21602 1.00095 0.95880 1.01440 1.21628 0.95023 0.82256 1.01033 0.87966 0.87428 0.91101 0.73808 0.70770 0.90494 0.92221 0.89912 0.91333 0.79229 0.94401 0.92135 0.91742 0.94096 0.92431 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 9.85 71.23 0.70 -1.83 16 2 C 0.22 5.53 6.86 42.87 0.29 5.83 16 3 N -0.53 -11.72 10.36 -187.21 -1.94 -13.66 16 4 C 0.34 6.27 12.27 180.86 2.22 8.49 16 5 N -0.55 -12.36 10.45 -312.04 -3.26 -15.62 16 6 C 0.40 9.80 7.72 85.19 0.66 10.46 16 7 O -0.48 -10.58 13.10 -85.55 -1.12 -11.70 16 8 C -0.26 -6.93 3.67 -19.82 -0.07 -7.00 16 9 C 0.58 17.86 5.40 86.70 0.47 18.33 16 10 O -0.57 -21.22 16.52 -3.98 -0.07 -21.29 16 11 N -0.58 -16.97 2.97 -822.35 -2.44 -19.42 16 12 C 0.13 3.56 6.08 86.35 0.53 4.08 16 13 C -0.14 -3.86 5.78 30.67 0.18 -3.69 16 14 C 0.17 5.66 2.53 45.02 0.11 5.77 16 15 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 16 N -0.72 -31.24 3.64 -322.81 -1.18 -32.41 16 17 C -0.23 -11.23 9.93 84.03 0.83 -10.39 16 18 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 19 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 20 N -0.97 -55.45 13.06 21.65 0.28 -55.17 16 21 Si 0.96 43.71 29.55 68.60 2.03 45.74 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.10 -2.77 2.67 -10.69 -0.03 -2.80 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 27 C -0.13 -3.84 9.05 71.98 0.65 -3.19 16 28 C 0.12 3.80 5.42 86.39 0.47 4.27 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.79 7.18 -2.38 -0.02 1.77 16 32 H 0.25 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.43 5.49 9.06 -74.06 -0.67 4.81 16 34 H 0.08 1.89 6.24 -2.39 -0.01 1.88 16 35 H 0.06 2.09 7.74 -2.39 -0.02 2.07 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.37 17.77 5.92 -92.71 -0.55 17.22 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.44 7.54 -2.39 -0.02 1.43 16 43 H 0.06 2.05 6.64 -2.39 -0.02 2.03 16 44 H 0.09 2.70 7.01 -2.39 -0.02 2.69 16 Total: -1.00 -67.26 360.29 -0.39 -67.65 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.17 Total: 30.75 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 7.48 Total: 25.12 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -8.54 Total: -136.28 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.19 Total: -32.99 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -67.26 -0.39 -67.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.095 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds