Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32215 * 120.51120 * 2 1 4 4 C 1.31908 * 121.14549 * 180.26155 * 3 2 1 5 5 N 1.31753 * 122.19568 * 359.73074 * 4 3 2 6 6 C 1.32750 * 120.87088 * 359.97438 * 5 4 3 7 7 O 1.35278 * 120.61925 * 180.02562 * 6 5 4 8 8 C 1.39775 * 120.51059 * 179.73071 * 2 1 3 9 9 C 1.47535 * 120.97691 * 0.03047 * 8 2 1 10 10 O 1.21579 * 119.99921 * 269.71177 * 9 8 2 11 11 N 1.34784 * 119.99965 * 89.71449 * 9 8 2 12 12 C 1.46927 * 120.62995 * 359.71755 * 11 9 8 13 13 C 1.53626 * 108.53906 * 126.36585 * 12 11 9 14 14 C 1.53041 * 109.24183 * 54.85853 * 13 12 11 15 15 H 1.09010 * 109.45941 * 58.52811 * 14 13 12 16 16 N 1.46493 * 109.46261 * 178.48654 * 14 13 12 17 17 C 1.36948 * 119.99998 * 275.06879 * 16 14 13 18 18 H 1.07996 * 119.99762 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99861 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47092 * 60.00193 * 21 19 17 23 23 H 1.48502 * 109.46827 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46805 * 300.00000 * 21 19 17 25 25 C 1.53036 * 109.53807 * 298.50777 * 14 13 12 26 26 H 1.09001 * 109.49825 * 301.41219 * 25 14 13 27 27 C 1.52998 * 109.50018 * 181.31503 * 25 14 13 28 28 C 1.46923 * 120.62964 * 179.97438 * 11 9 8 29 29 H 1.08999 * 109.47545 * 270.26275 * 1 2 3 30 30 H 1.08994 * 109.46920 * 30.26823 * 1 2 3 31 31 H 1.09002 * 109.47065 * 150.26435 * 1 2 3 32 32 H 1.08002 * 118.90703 * 179.70159 * 4 3 2 33 33 H 0.96703 * 114.00107 * 269.98809 * 7 6 5 34 34 H 1.08998 * 109.58645 * 246.19910 * 12 11 9 35 35 H 1.09001 * 109.58579 * 6.63067 * 12 11 9 36 36 H 1.08990 * 109.63926 * 294.86483 * 13 12 11 37 37 H 1.09005 * 109.42826 * 174.72267 * 13 12 11 38 38 H 0.97000 * 120.00421 * 95.06454 * 16 14 13 39 39 H 0.96996 * 120.00161 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.46962 * 300.16253 * 27 25 14 41 41 H 1.09000 * 109.46998 * 60.16273 * 27 25 14 42 42 H 1.09000 * 109.47539 * 180.15809 * 27 25 14 43 43 H 1.09007 * 109.58781 * 353.37617 * 28 11 9 44 44 H 1.09003 * 109.58561 * 113.79590 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 -0.0052 5 7 4.2115 0.0466 -0.0053 6 6 3.6234 -1.1435 0.0003 7 8 4.3618 -2.2770 0.0007 8 6 2.2166 -1.2042 0.0057 9 6 1.5124 -2.5006 0.0111 10 8 1.2264 -3.0326 1.0662 11 7 1.1861 -3.0952 -1.1537 12 6 1.5196 -2.4616 -2.4367 13 6 2.3044 -3.4697 -3.2899 14 6 1.4929 -4.7608 -3.4190 15 1 0.5270 -4.5388 -3.8730 16 7 2.2208 -5.7126 -4.2618 17 6 2.0989 -5.6531 -5.6245 18 1 1.4665 -4.9042 -6.0778 19 6 2.7890 -6.5547 -6.4231 20 7 3.5602 -7.4671 -5.8706 21 14 2.6233 -6.4730 -8.2819 22 1 3.0818 -5.1446 -8.7618 23 1 3.4544 -7.5371 -8.9002 24 1 1.2016 -6.6728 -8.6613 25 6 1.2762 -5.3700 -2.0319 26 1 2.2419 -5.5694 -1.5673 27 6 0.4931 -6.6776 -2.1650 28 6 0.4852 -4.3864 -1.1645 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 4.0088 2.1049 -0.0099 33 1 4.5729 -2.6092 -0.8826 34 1 0.6027 -2.1773 -2.9531 35 1 2.1310 -1.5768 -2.2594 36 1 3.2603 -3.6870 -2.8135 37 1 2.4783 -3.0488 -4.2802 38 1 2.7891 -6.3850 -3.8546 39 1 4.0421 -8.0973 -6.4286 40 1 -0.4717 -6.4775 -2.6310 41 1 1.0566 -7.3773 -2.7823 42 1 0.3366 -7.1097 -1.1767 43 1 0.4139 -4.7720 -0.1474 44 1 -0.5145 -4.2561 -1.5790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036143860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -13.955530 kcal Electronic energy + Delta-G solvation = -27998.783407 eV Core-core repulsion = 24144.980797 eV Total energy + Delta-G solvation = -3853.802610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77248 -39.92420 -38.01716 -37.75335 -34.82459 -34.45979 -33.05016 -32.05643 -31.59328 -29.46181 -29.06631 -26.80270 -25.54020 -24.56930 -23.16019 -22.89510 -21.79853 -20.42049 -19.41626 -19.18260 -18.33779 -17.52085 -17.14873 -16.70448 -16.17717 -15.37987 -15.06472 -14.79401 -14.55261 -14.34532 -13.99676 -13.86467 -13.71571 -13.43087 -13.20681 -13.12151 -12.90971 -12.53491 -12.41481 -12.38313 -11.90492 -11.72346 -11.50743 -11.29856 -11.02460 -10.90713 -10.76025 -10.68335 -10.51843 -10.29996 -10.08976 -9.86362 -9.75828 -9.72061 -9.60756 -8.98858 -8.67608 -7.06033 -5.85265 -3.14789 0.28029 0.55817 2.30002 2.80291 2.97677 3.26308 3.37178 3.42291 3.43501 3.60488 3.89777 4.16672 4.50106 4.60315 4.76388 4.85761 4.92968 5.12306 5.14654 5.16620 5.18186 5.29281 5.40507 5.42490 5.52525 5.58001 5.66020 5.83119 5.84773 5.96345 6.01774 6.15370 6.23963 6.32683 6.38454 6.46939 6.48518 6.68031 6.82298 6.90788 7.03955 7.25041 7.60333 7.64352 7.95291 8.32664 9.44331 10.00516 10.35203 11.36869 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.003578 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.535293 B = 7824.600245 C = 8405.018726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.224 3.776 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.540 5.540 6 C 0.400 3.600 7 O -0.467 6.467 8 C -0.242 4.242 9 C 0.578 3.422 10 O -0.527 6.527 11 N -0.597 5.597 12 C 0.107 3.893 13 C -0.151 4.151 14 C 0.185 3.815 15 H 0.049 0.951 16 N -0.720 5.720 17 C -0.243 4.243 18 H 0.069 0.931 19 C -0.009 4.009 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.110 4.110 26 H 0.071 0.929 27 C -0.136 4.136 28 C 0.120 3.880 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.206 0.794 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 14.774 10.503 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 N -0.242 5.242 4 C 0.046 3.954 5 N -0.265 5.265 6 C 0.212 3.788 7 O -0.275 6.275 8 C -0.251 4.251 9 C 0.363 3.637 10 O -0.403 6.403 11 N -0.329 5.329 12 C -0.016 4.016 13 C -0.192 4.192 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.360 5.360 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.130 4.130 26 H 0.089 0.911 27 C -0.194 4.194 28 C -0.002 4.002 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.223 0.777 33 H 0.277 0.723 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.996 15.288 11.444 19.739 hybrid contribution 0.177 -0.977 -1.494 1.793 sum -4.820 14.311 9.951 18.084 Atomic orbital electron populations 1.20906 0.86968 1.04601 1.04540 1.21790 0.97735 0.85963 0.86747 1.68291 1.10231 1.29275 1.16398 1.24978 0.86223 0.96158 0.88085 1.68081 1.42592 0.98652 1.17166 1.19387 0.85540 0.86033 0.87844 1.84667 1.72451 1.35760 1.34651 1.21712 0.95223 0.96919 1.11292 1.17571 0.78655 0.83476 0.84048 1.90808 1.54270 1.64545 1.30678 1.48162 1.57386 1.21888 1.05453 1.21964 1.00229 0.95822 0.83603 1.22800 0.99425 0.97690 0.99294 1.20179 0.94484 0.88658 0.89288 0.93275 1.42395 1.54615 1.36199 1.02766 1.19153 1.22977 1.12695 0.82555 0.91297 1.24725 0.99762 0.98243 0.97850 1.69642 1.33255 1.20662 1.34299 0.86310 0.77379 0.77035 0.85682 1.21312 1.21699 1.21253 1.21743 0.99399 0.95222 0.96630 0.91091 1.21655 1.00231 0.96757 1.00743 1.21797 0.94877 0.81665 1.01883 0.88752 0.88905 0.89923 0.77729 0.72348 0.90818 0.91696 0.92364 0.90379 0.78149 0.93382 0.92985 0.90668 0.93713 0.89080 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.85 36.00 0.35 -0.60 16 2 C 0.22 2.47 6.86 -81.85 -0.56 1.91 16 3 N -0.53 -5.60 10.36 -10.52 -0.11 -5.71 16 4 C 0.33 3.28 12.27 -92.09 -1.13 2.15 16 5 N -0.54 -6.54 10.45 -14.32 -0.15 -6.69 16 6 C 0.40 5.18 7.73 -16.18 -0.13 5.05 16 7 O -0.47 -5.96 13.10 -17.53 -0.23 -6.19 16 8 C -0.24 -3.08 3.66 -104.56 -0.38 -3.46 16 9 C 0.58 8.14 5.40 -12.47 -0.07 8.07 16 10 O -0.53 -9.18 16.52 5.30 0.09 -9.10 16 11 N -0.60 -7.58 2.97 -173.75 -0.52 -8.09 16 12 C 0.11 1.25 6.37 -3.48 -0.02 1.23 16 13 C -0.15 -2.23 5.67 -26.38 -0.15 -2.38 16 14 C 0.18 3.17 2.19 -67.89 -0.15 3.03 16 15 H 0.05 0.87 8.08 -51.92 -0.42 0.45 16 16 N -0.72 -16.22 4.41 -53.39 -0.24 -16.46 16 17 C -0.24 -6.21 9.93 -15.05 -0.15 -6.36 16 18 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 21 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.11 -1.65 2.46 -90.52 -0.22 -1.87 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 C -0.14 -2.06 9.02 37.16 0.34 -1.72 16 28 C 0.12 1.57 5.71 -3.73 -0.02 1.55 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.71 7.18 -51.93 -0.37 0.34 16 32 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.41 3.76 9.06 45.56 0.41 4.17 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.70 6.24 -51.93 -0.32 0.38 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.38 9.44 7.50 -40.82 -0.31 9.13 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.36 7.36 -51.93 -0.38 0.97 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.33 364.25 -7.88 -40.21 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.53 Total: 9.99 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.39 Total: 6.24 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.28 Total: -62.99 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.14 Total: -15.29 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.33 -7.88 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.254 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds