Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32215 * 120.51120 * 2 1 4 4 C 1.31908 * 121.14549 * 180.26155 * 3 2 1 5 5 N 1.31753 * 122.19568 * 359.73074 * 4 3 2 6 6 C 1.32750 * 120.87088 * 359.97438 * 5 4 3 7 7 O 1.35278 * 120.61925 * 180.02562 * 6 5 4 8 8 C 1.39775 * 120.51059 * 179.73071 * 2 1 3 9 9 C 1.47535 * 120.97691 * 0.03047 * 8 2 1 10 10 O 1.21579 * 119.99921 * 269.71177 * 9 8 2 11 11 N 1.34784 * 119.99965 * 89.71449 * 9 8 2 12 12 C 1.46927 * 120.62995 * 359.71755 * 11 9 8 13 13 C 1.53626 * 108.53906 * 126.36585 * 12 11 9 14 14 C 1.53041 * 109.24183 * 54.85853 * 13 12 11 15 15 H 1.09010 * 109.45941 * 58.52811 * 14 13 12 16 16 N 1.46493 * 109.46261 * 178.48654 * 14 13 12 17 17 C 1.36948 * 119.99998 * 275.06879 * 16 14 13 18 18 H 1.07996 * 119.99762 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99861 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47092 * 60.00193 * 21 19 17 23 23 H 1.48502 * 109.46827 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46805 * 300.00000 * 21 19 17 25 25 C 1.53036 * 109.53807 * 298.50777 * 14 13 12 26 26 H 1.09001 * 109.49825 * 301.41219 * 25 14 13 27 27 C 1.52998 * 109.50018 * 181.31503 * 25 14 13 28 28 C 1.46923 * 120.62964 * 179.97438 * 11 9 8 29 29 H 1.08999 * 109.47545 * 270.26275 * 1 2 3 30 30 H 1.08994 * 109.46920 * 30.26823 * 1 2 3 31 31 H 1.09002 * 109.47065 * 150.26435 * 1 2 3 32 32 H 1.08002 * 118.90703 * 179.70159 * 4 3 2 33 33 H 0.96703 * 114.00107 * 269.98809 * 7 6 5 34 34 H 1.08998 * 109.58645 * 246.19910 * 12 11 9 35 35 H 1.09001 * 109.58579 * 6.63067 * 12 11 9 36 36 H 1.08990 * 109.63926 * 294.86483 * 13 12 11 37 37 H 1.09005 * 109.42826 * 174.72267 * 13 12 11 38 38 H 0.97000 * 120.00421 * 95.06454 * 16 14 13 39 39 H 0.96996 * 120.00161 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.46962 * 300.16253 * 27 25 14 41 41 H 1.09000 * 109.46998 * 60.16273 * 27 25 14 42 42 H 1.09000 * 109.47539 * 180.15809 * 27 25 14 43 43 H 1.09007 * 109.58781 * 353.37617 * 28 11 9 44 44 H 1.09003 * 109.58561 * 113.79590 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 -0.0052 5 7 4.2115 0.0466 -0.0053 6 6 3.6234 -1.1435 0.0003 7 8 4.3618 -2.2770 0.0007 8 6 2.2166 -1.2042 0.0057 9 6 1.5124 -2.5006 0.0111 10 8 1.2264 -3.0326 1.0662 11 7 1.1861 -3.0952 -1.1537 12 6 1.5196 -2.4616 -2.4367 13 6 2.3044 -3.4697 -3.2899 14 6 1.4929 -4.7608 -3.4190 15 1 0.5270 -4.5388 -3.8730 16 7 2.2208 -5.7126 -4.2618 17 6 2.0989 -5.6531 -5.6245 18 1 1.4665 -4.9042 -6.0778 19 6 2.7890 -6.5547 -6.4231 20 7 3.5602 -7.4671 -5.8706 21 14 2.6233 -6.4730 -8.2819 22 1 3.0818 -5.1446 -8.7618 23 1 3.4544 -7.5371 -8.9002 24 1 1.2016 -6.6728 -8.6613 25 6 1.2762 -5.3700 -2.0319 26 1 2.2419 -5.5694 -1.5673 27 6 0.4931 -6.6776 -2.1650 28 6 0.4852 -4.3864 -1.1645 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 4.0088 2.1049 -0.0099 33 1 4.5729 -2.6092 -0.8826 34 1 0.6027 -2.1773 -2.9531 35 1 2.1310 -1.5768 -2.2594 36 1 3.2603 -3.6870 -2.8135 37 1 2.4783 -3.0488 -4.2802 38 1 2.7891 -6.3850 -3.8546 39 1 4.0421 -8.0973 -6.4286 40 1 -0.4717 -6.4775 -2.6310 41 1 1.0566 -7.3773 -2.7823 42 1 0.3366 -7.1097 -1.1767 43 1 0.4139 -4.7720 -0.1474 44 1 -0.5145 -4.2561 -1.5790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036143860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -38.344562 kcal Electronic energy + Delta-G solvation = -27999.840995 eV Core-core repulsion = 24144.980797 eV Total energy + Delta-G solvation = -3854.860198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67109 -41.01327 -39.05783 -38.91362 -36.23654 -35.39676 -34.47328 -33.16927 -32.90545 -31.04419 -29.87185 -27.89401 -26.91013 -25.81042 -24.37000 -23.95559 -23.11742 -21.60414 -20.62873 -20.07848 -19.26045 -19.00442 -18.55190 -17.66610 -17.18913 -16.77106 -16.25658 -15.87432 -15.72550 -15.47512 -15.39561 -15.23274 -14.90434 -14.49103 -14.36003 -13.95860 -13.91460 -13.74319 -13.67030 -13.22191 -13.13495 -12.97540 -12.82268 -12.77382 -12.51141 -12.45162 -12.19613 -12.09703 -11.83895 -11.66647 -11.50990 -11.17627 -11.12580 -10.88568 -10.63267 -10.51079 -9.80478 -8.95624 -7.89913 -5.17292 -0.57702 -0.29668 1.22404 1.50160 1.51318 1.57284 1.77395 2.12141 2.42169 2.58984 2.87658 3.09393 3.19082 3.43524 3.71392 3.76847 3.80355 3.94307 4.00343 4.05215 4.18137 4.27856 4.34346 4.47697 4.54131 4.61320 4.63743 4.75483 4.77345 4.81330 4.88109 4.92733 5.01540 5.14554 5.18534 5.27232 5.39592 5.47845 5.56771 5.60846 5.63282 6.17427 6.21606 6.31467 6.82486 6.87277 7.38607 8.14953 8.37200 9.33261 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.003578 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.535293 B = 7824.600245 C = 8405.018726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.228 3.772 3 N -0.528 5.528 4 C 0.338 3.662 5 N -0.557 5.557 6 C 0.391 3.609 7 O -0.483 6.483 8 C -0.261 4.261 9 C 0.584 3.416 10 O -0.565 6.565 11 N -0.591 5.591 12 C 0.118 3.882 13 C -0.141 4.141 14 C 0.180 3.820 15 H 0.052 0.948 16 N -0.731 5.731 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.073 4.073 20 N -0.970 5.970 21 Si 0.964 3.036 22 H -0.279 1.279 23 H -0.302 1.302 24 H -0.279 1.279 25 C -0.100 4.100 26 H 0.054 0.946 27 C -0.130 4.130 28 C 0.126 3.874 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.426 0.574 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.371 0.629 39 H 0.248 0.752 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 17.363 10.526 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 N -0.245 5.245 4 C 0.052 3.948 5 N -0.282 5.282 6 C 0.203 3.797 7 O -0.293 6.293 8 C -0.270 4.270 9 C 0.371 3.629 10 O -0.443 6.443 11 N -0.322 5.322 12 C -0.004 4.004 13 C -0.182 4.182 14 C 0.072 3.928 15 H 0.070 0.930 16 N -0.370 5.370 17 C -0.363 4.363 18 H 0.096 0.904 19 C -0.266 4.266 20 N -0.621 5.621 21 Si 0.794 3.206 22 H -0.205 1.205 23 H -0.229 1.229 24 H -0.205 1.205 25 C -0.120 4.120 26 H 0.073 0.927 27 C -0.188 4.188 28 C 0.004 3.996 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.289 0.711 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.203 0.797 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.467 17.935 11.457 22.243 hybrid contribution 0.607 -1.702 -1.433 2.306 sum -5.859 16.233 10.025 19.959 Atomic orbital electron populations 1.21004 0.85208 1.05546 1.05164 1.22198 0.98889 0.85452 0.85336 1.68424 1.10532 1.28795 1.16711 1.25803 0.86217 0.96856 0.85947 1.68161 1.43056 0.98860 1.18171 1.19556 0.85767 0.86316 0.88060 1.84628 1.72633 1.36192 1.35885 1.21627 0.95094 0.96742 1.13518 1.17714 0.77926 0.83718 0.83566 1.90787 1.55863 1.65715 1.31976 1.48148 1.56831 1.21614 1.05594 1.21923 1.00980 0.94989 0.82530 1.22576 0.99156 0.97048 0.99456 1.20415 0.94146 0.88702 0.89568 0.93036 1.42576 1.54884 1.37060 1.02442 1.19549 1.21232 1.11510 0.83981 0.90391 1.25436 1.00654 0.98787 1.01673 1.69803 1.35107 1.21962 1.35227 0.85346 0.77232 0.76733 0.81255 1.20497 1.22907 1.20544 1.21603 0.99063 0.95766 0.95544 0.92725 1.21574 0.99922 0.96071 1.01260 1.21722 0.95445 0.81248 1.01170 0.88186 0.86950 0.89908 0.74017 0.71051 0.88565 0.90240 0.93092 0.91380 0.79733 0.94328 0.92082 0.94135 0.91771 0.89525 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.85 71.24 0.70 -0.88 16 2 C 0.23 4.49 6.86 42.87 0.29 4.78 16 3 N -0.53 -9.78 10.36 -187.20 -1.94 -11.72 16 4 C 0.34 5.76 12.27 180.86 2.22 7.98 16 5 N -0.56 -12.55 10.45 -312.04 -3.26 -15.82 16 6 C 0.39 9.69 7.73 85.18 0.66 10.35 16 7 O -0.48 -12.23 13.10 -85.63 -1.12 -13.35 16 8 C -0.26 -6.20 3.66 -19.82 -0.07 -6.28 16 9 C 0.58 15.69 5.40 86.69 0.47 16.16 16 10 O -0.56 -19.29 16.52 -3.96 -0.07 -19.36 16 11 N -0.59 -13.89 2.97 -821.88 -2.44 -16.33 16 12 C 0.12 2.48 6.37 86.51 0.55 3.03 16 13 C -0.14 -4.01 5.67 30.82 0.17 -3.84 16 14 C 0.18 6.05 2.19 45.02 0.10 6.15 16 15 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 16 N -0.73 -33.25 4.41 -322.81 -1.42 -34.67 16 17 C -0.23 -11.77 9.93 84.03 0.83 -10.94 16 18 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 20 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 21 Si 0.96 44.19 29.55 68.60 2.03 46.22 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.10 -2.93 2.46 -10.73 -0.03 -2.96 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 C -0.13 -3.88 9.02 71.98 0.65 -3.23 16 28 C 0.13 3.07 5.71 86.35 0.49 3.56 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.18 7.18 -2.39 -0.02 1.16 16 32 H 0.24 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.43 7.74 9.06 -74.06 -0.67 7.07 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.51 6.24 -2.39 -0.01 1.50 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 38 H 0.37 18.80 7.50 -92.71 -0.70 18.11 16 39 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.04 1.49 7.36 -2.39 -0.02 1.47 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 2.27 7.00 -2.38 -0.02 2.25 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.48 364.25 -0.75 -71.23 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.32 Total: 30.46 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 7.51 Total: 20.36 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -8.78 Total: -135.55 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.19 Total: -32.71 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.48 -0.75 -71.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.888 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds