Wall clock time and date at job start Tue Mar 31 2020 13:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32215 * 120.51115 * 2 1 4 4 C 1.31908 * 121.14223 * 179.97438 * 3 2 1 5 5 N 1.31752 * 122.19989 * 359.97169 * 4 3 2 6 6 C 1.32743 * 120.86662 * 359.77242 * 5 4 3 7 7 O 1.35288 * 120.61564 * 180.24268 * 6 5 4 8 8 C 1.39767 * 120.50883 * 179.97438 * 2 1 3 9 9 C 1.47537 * 120.98196 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00013 * 89.99796 * 9 8 2 11 11 N 1.34772 * 120.00185 * 270.00403 * 9 8 2 12 12 C 1.46931 * 120.63173 * 359.97438 * 11 9 8 13 13 C 1.53187 * 108.77858 * 233.63340 * 12 11 9 14 14 C 1.53036 * 109.33909 * 305.34763 * 13 12 11 15 15 H 1.09003 * 109.46509 * 301.36375 * 14 13 12 16 16 N 1.46501 * 109.46507 * 181.40161 * 14 13 12 17 17 C 1.36934 * 120.00105 * 84.99454 * 16 14 13 18 18 H 1.08005 * 119.99984 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00024 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47052 * 89.99769 * 21 19 17 23 23 H 1.48487 * 109.47190 * 210.00271 * 21 19 17 24 24 H 1.48502 * 109.46996 * 330.00397 * 21 19 17 25 25 C 1.53109 * 109.50477 * 61.34678 * 14 13 12 26 26 H 1.08999 * 109.51108 * 58.63043 * 25 14 13 27 27 C 1.52997 * 109.49235 * 178.70090 * 25 14 13 28 28 C 1.46925 * 120.63360 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.47087 * 270.02782 * 1 2 3 30 30 H 1.08997 * 109.46758 * 30.03292 * 1 2 3 31 31 H 1.09005 * 109.46940 * 150.02720 * 1 2 3 32 32 H 1.08003 * 118.89992 * 179.97438 * 4 3 2 33 33 H 0.96700 * 113.99495 * 270.23886 * 7 6 5 34 34 H 1.09004 * 109.58377 * 113.84299 * 12 11 9 35 35 H 1.09007 * 109.58589 * 353.42421 * 12 11 9 36 36 H 1.09002 * 109.49796 * 65.31697 * 13 12 11 37 37 H 1.09000 * 109.49812 * 185.38420 * 13 12 11 38 38 H 0.96998 * 120.00039 * 265.00785 * 16 14 13 39 39 H 0.97000 * 119.99887 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.47697 * 179.85822 * 27 25 14 41 41 H 1.09009 * 109.46760 * 299.85626 * 27 25 14 42 42 H 1.08995 * 109.47470 * 59.85271 * 27 25 14 43 43 H 1.08995 * 109.58986 * 246.15399 * 28 11 9 44 44 H 1.08997 * 109.58553 * 6.44098 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1536 0.0005 5 7 4.2116 0.0465 0.0016 6 6 3.6234 -1.1435 0.0067 7 8 4.3618 -2.2770 0.0128 8 6 2.2166 -1.2042 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2217 -3.0355 -1.0508 11 7 1.1911 -3.0920 1.1693 12 6 1.5359 -2.4582 2.4493 13 6 2.3199 -3.4615 3.3010 14 6 1.5095 -4.7524 3.4379 15 1 0.5459 -4.5294 3.8961 16 7 2.2419 -5.7017 4.2797 17 6 2.1259 -5.6391 5.6427 18 1 1.4941 -4.8902 6.0971 19 6 2.8202 -6.5383 6.4403 20 7 3.5905 -7.4506 5.8866 21 14 2.6614 -6.4534 8.2997 22 1 1.5348 -7.3148 8.7401 23 1 3.9214 -6.9275 8.9262 24 1 2.4016 -5.0503 8.7108 25 6 1.2856 -5.3648 2.0525 26 1 2.2487 -5.5656 1.5833 27 6 0.5032 -6.6721 2.1926 28 6 0.4904 -4.3832 1.1867 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 4.0088 2.1048 0.0001 33 1 4.5803 -2.6087 -0.8689 34 1 0.6237 -2.1696 2.9716 35 1 2.1494 -1.5759 2.2666 36 1 3.2735 -3.6798 2.8203 37 1 2.4991 -3.0380 4.2892 38 1 2.8091 -6.3744 3.8716 39 1 4.0760 -8.0786 6.4441 40 1 0.3418 -7.1065 1.2061 41 1 1.0699 -7.3703 2.8088 42 1 -0.4592 -6.4710 2.6630 43 1 -0.5072 -4.2521 1.6058 44 1 0.4119 -4.7700 0.1707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036143862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:49 Heat of formation + Delta-G solvation = -13.885620 kcal Electronic energy + Delta-G solvation = -27968.761750 eV Core-core repulsion = 24114.962172 eV Total energy + Delta-G solvation = -3853.799579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76114 -39.89495 -38.03062 -37.70648 -34.76225 -34.45907 -33.01653 -32.04391 -31.52688 -29.41499 -29.05362 -26.75616 -25.50262 -24.54443 -23.16112 -22.82594 -21.72184 -20.38259 -19.33757 -19.19016 -18.34003 -17.53109 -17.09250 -16.57507 -16.24297 -15.39847 -15.00629 -14.76154 -14.49721 -14.30631 -13.94297 -13.79750 -13.70956 -13.36234 -13.26497 -13.09159 -12.83449 -12.48995 -12.39293 -12.32243 -11.84184 -11.67704 -11.48991 -11.24445 -10.95979 -10.84777 -10.68716 -10.67393 -10.45665 -10.22166 -10.10270 -9.79979 -9.70943 -9.66211 -9.63325 -8.93187 -8.62300 -6.99273 -5.79804 -3.08672 0.27455 0.55828 2.29175 2.86747 2.94559 3.30756 3.40715 3.46085 3.47812 3.60798 3.89821 4.17249 4.54990 4.60288 4.78020 4.92948 4.97683 5.16026 5.18043 5.20317 5.28541 5.32836 5.47581 5.52233 5.53214 5.64034 5.70725 5.85274 5.87503 6.02340 6.09589 6.27054 6.30642 6.39326 6.42717 6.48848 6.58605 6.76849 6.87502 7.02219 7.03018 7.29978 7.64177 7.66083 7.95254 8.38286 9.49886 10.06903 10.41806 11.42635 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003571 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.786812 B = 7839.897117 C = 8413.962937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.224 3.776 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.540 5.540 6 C 0.400 3.600 7 O -0.464 6.464 8 C -0.243 4.243 9 C 0.579 3.421 10 O -0.538 6.538 11 N -0.588 5.588 12 C 0.111 3.889 13 C -0.151 4.151 14 C 0.185 3.815 15 H 0.048 0.952 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.110 4.110 26 H 0.071 0.929 27 C -0.136 4.136 28 C 0.120 3.880 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.206 0.794 33 H 0.414 0.586 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 14.790 -13.936 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 N -0.242 5.242 4 C 0.045 3.955 5 N -0.265 5.265 6 C 0.212 3.788 7 O -0.273 6.273 8 C -0.252 4.252 9 C 0.364 3.636 10 O -0.416 6.416 11 N -0.319 5.319 12 C -0.012 4.012 13 C -0.192 4.192 14 C 0.075 3.925 15 H 0.066 0.934 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.130 4.130 26 H 0.089 0.911 27 C -0.194 4.194 28 C -0.002 4.002 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.222 0.778 33 H 0.275 0.725 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.000 15.323 -13.689 21.147 hybrid contribution 0.214 -0.960 0.648 1.177 sum -4.786 14.363 -13.041 19.982 Atomic orbital electron populations 1.20923 0.86973 1.04851 1.04429 1.21793 0.97752 0.85974 0.86719 1.68296 1.10221 1.29307 1.16389 1.24974 0.86233 0.96165 0.88082 1.68082 1.42605 0.98675 1.17153 1.19414 0.85536 0.86058 0.87784 1.84695 1.72361 1.35717 1.34478 1.21758 0.95174 0.96986 1.11259 1.17553 0.78536 0.83493 0.84040 1.90803 1.55098 1.64832 1.30894 1.48109 1.56448 1.21761 1.05610 1.21838 0.99740 0.96095 0.83532 1.22688 0.99873 0.97451 0.99186 1.20192 0.94364 0.88771 0.89212 0.93398 1.42391 1.54544 1.36296 1.02739 1.19206 1.22701 1.12595 0.82568 0.91261 1.24720 0.99828 0.98359 0.97816 1.69656 1.33291 1.20888 1.34103 0.86231 0.76950 0.77414 0.85824 1.21741 1.21817 1.20823 1.21747 0.99326 0.95147 0.96764 0.91077 1.21657 1.00233 0.96796 1.00665 1.21796 0.94877 0.81756 1.01809 0.88779 0.88968 0.89664 0.77753 0.72524 0.91139 0.91634 0.91806 0.90600 0.78173 0.93496 0.93771 0.90673 0.93005 0.91147 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.85 36.01 0.35 -0.62 16 2 C 0.22 2.47 6.86 -81.86 -0.56 1.90 16 3 N -0.53 -5.59 10.36 -10.52 -0.11 -5.70 16 4 C 0.33 3.27 12.27 -92.09 -1.13 2.14 16 5 N -0.54 -6.48 10.45 -14.31 -0.15 -6.63 16 6 C 0.40 5.10 7.71 -16.18 -0.12 4.97 16 7 O -0.46 -5.76 13.10 -17.56 -0.23 -5.99 16 8 C -0.24 -3.05 3.67 -104.56 -0.38 -3.44 16 9 C 0.58 8.11 5.40 -12.47 -0.07 8.05 16 10 O -0.54 -8.81 16.52 5.29 0.09 -8.73 16 11 N -0.59 -8.02 2.97 -174.02 -0.52 -8.54 16 12 C 0.11 1.50 6.34 -3.71 -0.02 1.48 16 13 C -0.15 -2.57 5.66 -26.62 -0.15 -2.72 16 14 C 0.19 3.43 2.20 -67.85 -0.15 3.28 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.72 -17.09 4.41 -53.35 -0.24 -17.33 16 17 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 18 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 21 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.11 -1.75 2.46 -90.49 -0.22 -1.97 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 C -0.14 -2.12 9.02 37.16 0.34 -1.78 16 28 C 0.12 1.63 5.72 -3.73 -0.02 1.61 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.78 7.18 -51.93 -0.37 0.41 16 32 H 0.21 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.41 3.25 9.06 45.56 0.41 3.66 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.87 6.22 -51.92 -0.32 0.55 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.38 9.89 7.51 -40.82 -0.31 9.58 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.40 7.37 -51.92 -0.38 1.01 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -32.95 364.21 -7.88 -40.83 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.53 Total: 10.49 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.39 Total: 5.98 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.29 Total: -64.99 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.14 Total: -14.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.95 -7.88 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds