Wall clock time and date at job start Tue Mar 31 2020 13:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32215 * 120.51115 * 2 1 4 4 C 1.31908 * 121.14223 * 179.97438 * 3 2 1 5 5 N 1.31752 * 122.19989 * 359.97169 * 4 3 2 6 6 C 1.32743 * 120.86662 * 359.77242 * 5 4 3 7 7 O 1.35288 * 120.61564 * 180.24268 * 6 5 4 8 8 C 1.39767 * 120.50883 * 179.97438 * 2 1 3 9 9 C 1.47537 * 120.98196 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00013 * 89.99796 * 9 8 2 11 11 N 1.34772 * 120.00185 * 270.00403 * 9 8 2 12 12 C 1.46931 * 120.63173 * 359.97438 * 11 9 8 13 13 C 1.53187 * 108.77858 * 233.63340 * 12 11 9 14 14 C 1.53036 * 109.33909 * 305.34763 * 13 12 11 15 15 H 1.09003 * 109.46509 * 301.36375 * 14 13 12 16 16 N 1.46501 * 109.46507 * 181.40161 * 14 13 12 17 17 C 1.36934 * 120.00105 * 84.99454 * 16 14 13 18 18 H 1.08005 * 119.99984 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00024 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47052 * 89.99769 * 21 19 17 23 23 H 1.48487 * 109.47190 * 210.00271 * 21 19 17 24 24 H 1.48502 * 109.46996 * 330.00397 * 21 19 17 25 25 C 1.53109 * 109.50477 * 61.34678 * 14 13 12 26 26 H 1.08999 * 109.51108 * 58.63043 * 25 14 13 27 27 C 1.52997 * 109.49235 * 178.70090 * 25 14 13 28 28 C 1.46925 * 120.63360 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.47087 * 270.02782 * 1 2 3 30 30 H 1.08997 * 109.46758 * 30.03292 * 1 2 3 31 31 H 1.09005 * 109.46940 * 150.02720 * 1 2 3 32 32 H 1.08003 * 118.89992 * 179.97438 * 4 3 2 33 33 H 0.96700 * 113.99495 * 270.23886 * 7 6 5 34 34 H 1.09004 * 109.58377 * 113.84299 * 12 11 9 35 35 H 1.09007 * 109.58589 * 353.42421 * 12 11 9 36 36 H 1.09002 * 109.49796 * 65.31697 * 13 12 11 37 37 H 1.09000 * 109.49812 * 185.38420 * 13 12 11 38 38 H 0.96998 * 120.00039 * 265.00785 * 16 14 13 39 39 H 0.97000 * 119.99887 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.47697 * 179.85822 * 27 25 14 41 41 H 1.09009 * 109.46760 * 299.85626 * 27 25 14 42 42 H 1.08995 * 109.47470 * 59.85271 * 27 25 14 43 43 H 1.08995 * 109.58986 * 246.15399 * 28 11 9 44 44 H 1.08997 * 109.58553 * 6.44098 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1536 0.0005 5 7 4.2116 0.0465 0.0016 6 6 3.6234 -1.1435 0.0067 7 8 4.3618 -2.2770 0.0128 8 6 2.2166 -1.2042 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2217 -3.0355 -1.0508 11 7 1.1911 -3.0920 1.1693 12 6 1.5359 -2.4582 2.4493 13 6 2.3199 -3.4615 3.3010 14 6 1.5095 -4.7524 3.4379 15 1 0.5459 -4.5294 3.8961 16 7 2.2419 -5.7017 4.2797 17 6 2.1259 -5.6391 5.6427 18 1 1.4941 -4.8902 6.0971 19 6 2.8202 -6.5383 6.4403 20 7 3.5905 -7.4506 5.8866 21 14 2.6614 -6.4534 8.2997 22 1 1.5348 -7.3148 8.7401 23 1 3.9214 -6.9275 8.9262 24 1 2.4016 -5.0503 8.7108 25 6 1.2856 -5.3648 2.0525 26 1 2.2487 -5.5656 1.5833 27 6 0.5032 -6.6721 2.1926 28 6 0.4904 -4.3832 1.1867 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 4.0088 2.1048 0.0001 33 1 4.5803 -2.6087 -0.8689 34 1 0.6237 -2.1696 2.9716 35 1 2.1494 -1.5759 2.2666 36 1 3.2735 -3.6798 2.8203 37 1 2.4991 -3.0380 4.2892 38 1 2.8091 -6.3744 3.8716 39 1 4.0760 -8.0786 6.4441 40 1 0.3418 -7.1065 1.2061 41 1 1.0699 -7.3703 2.8088 42 1 -0.4592 -6.4710 2.6630 43 1 -0.5072 -4.2521 1.6058 44 1 0.4119 -4.7700 0.1707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036143862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:49 Heat of formation + Delta-G solvation = -38.892343 kcal Electronic energy + Delta-G solvation = -27969.846123 eV Core-core repulsion = 24114.962172 eV Total energy + Delta-G solvation = -3854.883952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65477 -41.01544 -39.08208 -38.87534 -36.23622 -35.38301 -34.49003 -33.19665 -32.89763 -31.07750 -29.86672 -27.87508 -26.92355 -25.82150 -24.38314 -23.95021 -23.12841 -21.61009 -20.62516 -20.06755 -19.23788 -19.04336 -18.59267 -17.54896 -17.25382 -16.78120 -16.27922 -15.88173 -15.73725 -15.46874 -15.31404 -15.28744 -14.92170 -14.49668 -14.38210 -14.01574 -13.86456 -13.69127 -13.67222 -13.24300 -13.13128 -12.97786 -12.86378 -12.78356 -12.52068 -12.44140 -12.15233 -12.10008 -11.84387 -11.68405 -11.50190 -11.18797 -11.13120 -10.90644 -10.59130 -10.53447 -9.79852 -8.97494 -7.91290 -5.19004 -0.57486 -0.28569 1.21477 1.48543 1.49266 1.57285 1.80547 2.12734 2.46414 2.57698 2.88340 3.09670 3.17110 3.41957 3.71505 3.76122 3.81022 3.93004 4.01781 4.05948 4.18174 4.26702 4.32594 4.47052 4.56849 4.61852 4.62556 4.73574 4.76606 4.80066 4.88517 4.92500 5.00089 5.15298 5.17946 5.27392 5.37486 5.47689 5.55197 5.59972 5.63747 6.18048 6.26475 6.30140 6.82861 6.85931 7.36735 8.12685 8.35659 9.32327 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003571 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.786812 B = 7839.897117 C = 8413.962937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.227 3.773 3 N -0.529 5.529 4 C 0.337 3.663 5 N -0.558 5.558 6 C 0.392 3.608 7 O -0.482 6.482 8 C -0.262 4.262 9 C 0.586 3.414 10 O -0.564 6.564 11 N -0.588 5.588 12 C 0.124 3.876 13 C -0.140 4.140 14 C 0.181 3.819 15 H 0.054 0.946 16 N -0.731 5.731 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.075 4.075 20 N -0.971 5.971 21 Si 0.967 3.033 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.269 1.269 25 C -0.100 4.100 26 H 0.050 0.950 27 C -0.129 4.129 28 C 0.127 3.873 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.428 0.572 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.370 0.630 39 H 0.248 0.752 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 17.185 -14.160 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 N -0.246 5.246 4 C 0.051 3.949 5 N -0.284 5.284 6 C 0.204 3.796 7 O -0.293 6.293 8 C -0.271 4.271 9 C 0.372 3.628 10 O -0.444 6.444 11 N -0.318 5.318 12 C 0.001 3.999 13 C -0.181 4.181 14 C 0.073 3.927 15 H 0.072 0.928 16 N -0.370 5.370 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.267 4.267 20 N -0.622 5.622 21 Si 0.797 3.203 22 H -0.215 1.215 23 H -0.228 1.228 24 H -0.194 1.194 25 C -0.120 4.120 26 H 0.069 0.931 27 C -0.187 4.187 28 C 0.004 3.996 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.259 0.741 33 H 0.292 0.708 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.767 17.769 -13.937 23.575 hybrid contribution 0.765 -1.630 0.632 1.909 sum -6.003 16.138 -13.305 21.760 Atomic orbital electron populations 1.21014 0.85187 1.05262 1.05542 1.22205 0.98922 0.85472 0.85300 1.68426 1.10519 1.28844 1.16779 1.25788 0.86238 0.96869 0.85971 1.68163 1.43077 0.98903 1.18208 1.19575 0.85776 0.86352 0.87854 1.84645 1.72521 1.36091 1.36062 1.21663 0.95068 0.96798 1.13547 1.17682 0.77821 0.83763 0.83498 1.90785 1.56122 1.65734 1.31729 1.48110 1.56342 1.21725 1.05657 1.21730 1.00422 0.94851 0.82930 1.22459 0.99052 0.97559 0.99064 1.20426 0.93961 0.88469 0.89868 0.92763 1.42585 1.54825 1.37069 1.02510 1.19603 1.21226 1.11596 0.83931 0.90384 1.25474 1.00546 0.98788 1.01901 1.69819 1.35012 1.22140 1.35217 0.85232 0.76245 0.77846 0.81015 1.21536 1.22816 1.19375 1.21609 0.98976 0.96003 0.95419 0.93115 1.21569 0.99877 0.95842 1.01396 1.21740 0.95351 0.81111 1.01350 0.87136 0.87392 0.90370 0.74097 0.70809 0.88414 0.91017 0.94247 0.91909 0.79810 0.94284 0.91469 0.94253 0.91933 0.88643 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.85 71.24 0.70 -0.89 16 2 C 0.23 4.49 6.86 42.87 0.29 4.78 16 3 N -0.53 -9.87 10.36 -187.21 -1.94 -11.81 16 4 C 0.34 5.81 12.27 180.86 2.22 8.03 16 5 N -0.56 -12.61 10.45 -312.03 -3.26 -15.87 16 6 C 0.39 9.68 7.71 85.19 0.66 10.34 16 7 O -0.48 -12.01 13.10 -85.74 -1.12 -13.13 16 8 C -0.26 -6.21 3.67 -19.82 -0.07 -6.29 16 9 C 0.59 15.63 5.40 86.70 0.47 16.10 16 10 O -0.56 -17.89 16.52 -3.99 -0.07 -17.96 16 11 N -0.59 -14.97 2.97 -822.75 -2.45 -17.42 16 12 C 0.12 3.08 6.34 86.36 0.55 3.63 16 13 C -0.14 -4.72 5.66 30.67 0.17 -4.54 16 14 C 0.18 6.63 2.20 45.04 0.10 6.73 16 15 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 16 N -0.73 -35.32 4.41 -322.71 -1.42 -36.74 16 17 C -0.23 -12.34 9.93 84.03 0.83 -11.51 16 18 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 20 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 21 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C -0.10 -3.13 2.46 -10.71 -0.03 -3.16 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 27 C -0.13 -3.94 9.02 71.98 0.65 -3.30 16 28 C 0.13 3.19 5.72 86.35 0.49 3.69 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.25 7.18 -2.38 -0.02 1.23 16 32 H 0.24 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.43 6.89 9.06 -74.06 -0.67 6.22 16 34 H 0.10 1.97 8.14 -2.38 -0.02 1.96 16 35 H 0.07 1.76 6.22 -2.38 -0.01 1.75 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.37 19.80 7.51 -92.71 -0.70 19.10 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.48 7.37 -2.38 -0.02 1.47 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 2.38 7.00 -2.39 -0.02 2.36 16 Total: -1.00 -71.95 364.21 -0.77 -72.71 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.32 Total: 31.60 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 7.50 Total: 19.85 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -8.79 Total: -140.57 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.19 Total: -31.09 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.95 -0.77 -72.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036143862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.822 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds