Wall clock time and date at job start Tue Mar 31 2020 12:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21307 * 120.00240 * 2 1 4 4 N 1.34774 * 119.99774 * 179.97438 * 2 1 3 5 5 C 1.40443 * 120.00067 * 179.97438 * 4 2 1 6 6 C 1.35010 * 126.85675 * 359.97438 * 5 4 2 7 7 N 1.36774 * 108.93451 * 180.02562 * 6 5 4 8 8 H 0.97005 * 124.79290 * 180.02562 * 7 6 5 9 9 C 1.34594 * 110.41466 * 359.72082 * 7 6 5 10 10 C 1.50701 * 125.82124 * 180.28232 * 9 7 6 11 11 C 1.37829 * 108.35999 * 0.44793 * 9 7 6 12 12 C 1.47139 * 126.99320 * 179.83167 * 11 9 7 13 13 O 1.21638 * 119.99748 * 269.68370 * 12 11 9 14 14 N 1.34767 * 119.99817 * 89.68795 * 12 11 9 15 15 C 1.46497 * 120.00215 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47457 * 180.02562 * 15 14 12 17 17 H 1.08998 * 112.77949 * 303.71858 * 16 15 14 18 18 C 1.53497 * 113.46932 * 172.94054 * 16 15 14 19 19 C 1.53760 * 83.25962 * 218.98184 * 18 16 15 20 20 N 1.47066 * 87.88512 * 26.23865 * 19 18 16 21 21 C 1.36938 * 136.05871 * 152.96551 * 20 19 18 22 22 H 1.07998 * 120.00092 * 186.04810 * 21 20 19 23 23 C 1.38811 * 119.99436 * 6.05177 * 21 20 19 24 24 N 1.31621 * 120.00273 * 354.92055 * 23 21 20 25 25 Si 1.86804 * 119.99871 * 174.92363 * 23 21 20 26 26 H 1.48501 * 109.46999 * 275.01427 * 25 23 21 27 27 H 1.48501 * 109.47000 * 35.01113 * 25 23 21 28 28 H 1.48498 * 109.47339 * 155.01114 * 25 23 21 29 29 H 1.08999 * 109.47217 * 270.00740 * 1 2 3 30 30 H 1.09001 * 109.46762 * 30.00067 * 1 2 3 31 31 H 1.08994 * 109.47063 * 150.00425 * 1 2 3 32 32 H 0.97002 * 120.00222 * 0.02562 * 4 2 1 33 33 H 1.07994 * 125.53499 * 0.03284 * 6 5 4 34 34 H 1.09001 * 109.46858 * 270.19377 * 10 9 7 35 35 H 1.09005 * 109.46972 * 30.19160 * 10 9 7 36 36 H 1.08994 * 109.47200 * 150.19251 * 10 9 7 37 37 H 0.97005 * 120.00183 * 359.97438 * 14 12 11 38 38 H 1.09007 * 109.47043 * 59.99926 * 15 14 12 39 39 H 1.09003 * 109.47273 * 300.00285 * 15 14 12 40 40 H 1.09004 * 114.20602 * 332.73674 * 18 16 15 41 41 H 1.09004 * 114.21002 * 105.36208 * 18 16 15 42 42 H 1.08993 * 113.46041 * 271.50371 * 19 18 16 43 43 H 1.08994 * 113.54913 * 140.98731 * 19 18 16 44 44 H 0.97005 * 119.99962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5853 -1.1673 0.0000 6 6 4.3951 -0.0870 -0.0015 7 7 5.6965 -0.5080 -0.0022 8 1 6.4683 0.0796 -0.0029 9 6 5.7550 -1.8527 0.0051 10 6 7.0141 -2.6807 0.0128 11 6 4.4670 -2.3433 0.0004 12 6 4.0579 -3.7566 0.0020 13 8 3.8880 -4.3417 -1.0508 14 7 3.8714 -4.4028 1.1698 15 6 3.4635 -5.8099 1.1715 16 6 3.3223 -6.2983 2.6145 17 1 4.2327 -6.1604 3.1977 18 6 2.7326 -7.7111 2.7267 19 6 1.9958 -7.1115 3.9358 20 7 2.1142 -5.7970 3.2870 21 6 1.4122 -4.6214 3.3055 22 1 1.6825 -3.8203 2.6335 23 6 0.3530 -4.4595 4.1880 24 7 -0.0405 -5.4685 4.9361 25 14 -0.5139 -2.8096 4.3140 26 1 0.2232 -1.9342 5.2605 27 1 -0.5541 -2.1681 2.9754 28 1 -1.8997 -3.0149 4.8064 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 1.6958 -2.0073 0.0005 33 1 4.0685 0.9423 -0.0021 34 1 7.3223 -2.8828 -1.0130 35 1 7.8044 -2.1354 0.5289 36 1 6.8263 -3.6226 0.5281 37 1 4.0072 -3.9363 2.0094 38 1 4.2167 -6.4071 0.6574 39 1 2.5071 -5.9116 0.6586 40 1 2.0831 -7.9915 1.8974 41 1 3.4612 -8.4805 2.9825 42 1 2.5566 -7.1879 4.8672 43 1 0.9665 -7.4562 4.0333 44 1 -0.7808 -5.3554 5.5525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038429017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:32 Heat of formation + Delta-G solvation = 26.742274 kcal Electronic energy + Delta-G solvation = -27611.718655 eV Core-core repulsion = 23759.680834 eV Total energy + Delta-G solvation = -3852.037821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31837 -39.39305 -38.96182 -37.90410 -34.70630 -33.90753 -32.25637 -31.60940 -30.91886 -29.17516 -28.06587 -27.53114 -25.90510 -23.49531 -22.84336 -22.05485 -21.36029 -19.77014 -19.48063 -18.95384 -18.16830 -16.73587 -16.26715 -15.94206 -15.80314 -15.71066 -15.32791 -15.19555 -14.47437 -14.38208 -14.14622 -13.71824 -13.68203 -13.19560 -13.05720 -12.83949 -12.79792 -12.64125 -12.61533 -12.25447 -12.02189 -11.70443 -11.53987 -11.11150 -10.99720 -10.82811 -10.79200 -10.60268 -10.06267 -9.88112 -9.85404 -9.67213 -9.20088 -8.85306 -8.51478 -8.25332 -7.64698 -6.91872 -5.82042 -3.13367 2.10983 2.18799 2.88800 3.01362 3.13648 3.31233 3.37108 3.39280 3.40661 3.86333 4.39292 4.71122 4.77267 5.00754 5.13696 5.19553 5.29536 5.38581 5.39471 5.40360 5.42619 5.55001 5.71571 5.74576 5.79068 5.82163 5.91127 5.94081 6.09266 6.16918 6.31768 6.39724 6.58409 6.72071 6.84250 6.93466 6.99073 7.21033 7.35976 7.44948 7.54535 7.59380 7.93134 7.99572 8.16595 8.65307 8.98936 9.66183 10.60575 11.35741 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.005563 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.910223 B = 5031.648333 C = 7156.413337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.544 6.544 4 N -0.638 5.638 5 C 0.095 3.905 6 C -0.030 4.030 7 N -0.546 5.546 8 H 0.417 0.583 9 C 0.079 3.921 10 C -0.088 4.088 11 C -0.231 4.231 12 C 0.588 3.412 13 O -0.549 6.549 14 N -0.705 5.705 15 C 0.120 3.880 16 C 0.127 3.873 17 H 0.048 0.952 18 C -0.161 4.161 19 C 0.154 3.846 20 N -0.600 5.600 21 C -0.213 4.213 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.904 3.096 26 H -0.289 1.289 27 H -0.281 1.281 28 H -0.291 1.291 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.416 0.584 33 H 0.192 0.808 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.405 0.595 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.026 0.974 43 H 0.068 0.932 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 6.028 -8.376 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.422 6.422 4 N -0.281 5.281 5 C -0.005 4.005 6 C -0.160 4.160 7 N -0.143 5.143 8 H 0.254 0.746 9 C -0.039 4.039 10 C -0.146 4.146 11 C -0.244 4.244 12 C 0.373 3.627 13 O -0.427 6.427 14 N -0.355 5.355 15 C -0.004 4.004 16 C 0.019 3.981 17 H 0.065 0.935 18 C -0.201 4.201 19 C 0.029 3.971 20 N -0.326 5.326 21 C -0.340 4.340 22 H 0.098 0.902 23 C -0.203 4.203 24 N -0.562 5.562 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.207 1.207 28 H -0.217 1.217 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.252 0.748 33 H 0.209 0.791 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.246 6.676 -9.007 15.188 hybrid contribution -0.445 0.985 0.774 1.329 sum 9.801 7.661 -8.233 14.917 Atomic orbital electron populations 1.21875 0.90655 1.05132 1.05489 1.20905 0.90851 0.82719 0.75319 1.90549 1.70244 1.31420 1.49940 1.43059 1.03833 1.10052 1.71158 1.17790 0.82397 0.92216 1.08102 1.22033 0.81139 0.99553 1.13268 1.41324 1.08136 1.05790 1.59033 0.74593 1.20219 0.95016 0.83473 1.05143 1.20401 0.91984 0.98972 1.03242 1.19993 0.91672 0.91924 1.20797 1.17358 0.76792 0.84751 0.83757 1.90759 1.51932 1.68344 1.31669 1.46067 1.68044 1.13020 1.08362 1.21814 0.99749 0.80304 0.98544 1.22413 0.92075 0.92627 0.91007 0.93520 1.23717 1.00008 0.94879 1.01447 1.22023 0.99190 0.84200 0.91736 1.45681 1.24243 1.11531 1.51159 1.18820 1.08945 0.90355 1.15908 0.90205 1.24799 0.99364 0.97513 0.98605 1.69837 1.29265 1.29312 1.27831 0.86268 0.78868 0.83630 0.77759 1.21641 1.20681 1.21682 0.88288 0.88557 0.89716 0.74777 0.79093 0.90380 0.91149 0.89862 0.76064 0.92273 0.91166 0.90218 0.92397 0.95655 0.91331 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.30 36.01 0.37 -1.56 16 2 C 0.51 7.59 7.91 -10.99 -0.09 7.50 16 3 O -0.54 -9.14 14.32 5.53 0.08 -9.06 16 4 N -0.64 -9.84 5.46 -8.51 -0.05 -9.89 16 5 C 0.10 1.53 7.22 -81.52 -0.59 0.94 16 6 C -0.03 -0.43 10.79 -16.49 -0.18 -0.60 16 7 N -0.55 -6.03 5.90 -8.68 -0.05 -6.08 16 8 H 0.42 2.99 8.96 -40.82 -0.37 2.62 16 9 C 0.08 1.00 7.21 -81.53 -0.59 0.41 16 10 C -0.09 -0.83 10.25 36.01 0.37 -0.46 16 11 C -0.23 -3.66 6.09 -102.89 -0.63 -4.29 16 12 C 0.59 10.36 7.32 -12.65 -0.09 10.27 16 13 O -0.55 -11.33 17.11 5.24 0.09 -11.24 16 14 N -0.71 -12.00 5.33 -61.48 -0.33 -12.33 16 15 C 0.12 2.12 5.52 -4.05 -0.02 2.09 16 16 C 0.13 2.36 4.10 -72.39 -0.30 2.06 16 17 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.16 -2.84 8.04 -26.08 -0.21 -3.05 16 19 C 0.15 3.44 7.33 -8.36 -0.06 3.38 16 20 N -0.60 -14.15 3.65 -176.82 -0.64 -14.80 16 21 C -0.21 -5.51 10.54 -15.06 -0.16 -5.67 16 22 H 0.08 1.98 7.61 -52.49 -0.40 1.58 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 24 N -0.92 -26.31 11.61 55.49 0.64 -25.67 16 25 Si 0.90 21.24 29.56 -169.99 -5.02 16.21 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.42 6.27 8.83 -40.82 -0.36 5.91 16 33 H 0.19 2.73 5.86 -52.49 -0.31 2.42 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.84 7.95 -51.93 -0.41 0.42 16 37 H 0.40 6.90 8.46 -40.82 -0.35 6.55 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.71 7.30 -51.93 -0.38 1.33 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -33.99 375.18 -8.25 -42.23 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.35 Total: 14.19 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -2.26 Total: 10.77 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.43 Total: -68.76 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.17 Total: -20.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.99 -8.25 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038429017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.974 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds