Wall clock time and date at job start Tue Mar 31 2020 12:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21307 * 120.00240 * 2 1 4 4 N 1.34774 * 119.99774 * 179.97438 * 2 1 3 5 5 C 1.40443 * 120.00067 * 179.97438 * 4 2 1 6 6 C 1.35010 * 126.85675 * 359.97438 * 5 4 2 7 7 N 1.36774 * 108.93451 * 180.02562 * 6 5 4 8 8 H 0.97005 * 124.79290 * 180.02562 * 7 6 5 9 9 C 1.34594 * 110.41466 * 359.72082 * 7 6 5 10 10 C 1.50701 * 125.82124 * 180.28232 * 9 7 6 11 11 C 1.37829 * 108.35999 * 0.44793 * 9 7 6 12 12 C 1.47139 * 126.99320 * 179.83167 * 11 9 7 13 13 O 1.21638 * 119.99748 * 269.68370 * 12 11 9 14 14 N 1.34767 * 119.99817 * 89.68795 * 12 11 9 15 15 C 1.46497 * 120.00215 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47457 * 180.02562 * 15 14 12 17 17 H 1.08998 * 112.77949 * 303.71858 * 16 15 14 18 18 C 1.53497 * 113.46932 * 172.94054 * 16 15 14 19 19 C 1.53760 * 83.25962 * 218.98184 * 18 16 15 20 20 N 1.47066 * 87.88512 * 26.23865 * 19 18 16 21 21 C 1.36938 * 136.05871 * 152.96551 * 20 19 18 22 22 H 1.07998 * 120.00092 * 186.04810 * 21 20 19 23 23 C 1.38811 * 119.99436 * 6.05177 * 21 20 19 24 24 N 1.31621 * 120.00273 * 354.92055 * 23 21 20 25 25 Si 1.86804 * 119.99871 * 174.92363 * 23 21 20 26 26 H 1.48501 * 109.46999 * 275.01427 * 25 23 21 27 27 H 1.48501 * 109.47000 * 35.01113 * 25 23 21 28 28 H 1.48498 * 109.47339 * 155.01114 * 25 23 21 29 29 H 1.08999 * 109.47217 * 270.00740 * 1 2 3 30 30 H 1.09001 * 109.46762 * 30.00067 * 1 2 3 31 31 H 1.08994 * 109.47063 * 150.00425 * 1 2 3 32 32 H 0.97002 * 120.00222 * 0.02562 * 4 2 1 33 33 H 1.07994 * 125.53499 * 0.03284 * 6 5 4 34 34 H 1.09001 * 109.46858 * 270.19377 * 10 9 7 35 35 H 1.09005 * 109.46972 * 30.19160 * 10 9 7 36 36 H 1.08994 * 109.47200 * 150.19251 * 10 9 7 37 37 H 0.97005 * 120.00183 * 359.97438 * 14 12 11 38 38 H 1.09007 * 109.47043 * 59.99926 * 15 14 12 39 39 H 1.09003 * 109.47273 * 300.00285 * 15 14 12 40 40 H 1.09004 * 114.20602 * 332.73674 * 18 16 15 41 41 H 1.09004 * 114.21002 * 105.36208 * 18 16 15 42 42 H 1.08993 * 113.46041 * 271.50371 * 19 18 16 43 43 H 1.08994 * 113.54913 * 140.98731 * 19 18 16 44 44 H 0.97005 * 119.99962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5853 -1.1673 0.0000 6 6 4.3951 -0.0870 -0.0015 7 7 5.6965 -0.5080 -0.0022 8 1 6.4683 0.0796 -0.0029 9 6 5.7550 -1.8527 0.0051 10 6 7.0141 -2.6807 0.0128 11 6 4.4670 -2.3433 0.0004 12 6 4.0579 -3.7566 0.0020 13 8 3.8880 -4.3417 -1.0508 14 7 3.8714 -4.4028 1.1698 15 6 3.4635 -5.8099 1.1715 16 6 3.3223 -6.2983 2.6145 17 1 4.2327 -6.1604 3.1977 18 6 2.7326 -7.7111 2.7267 19 6 1.9958 -7.1115 3.9358 20 7 2.1142 -5.7970 3.2870 21 6 1.4122 -4.6214 3.3055 22 1 1.6825 -3.8203 2.6335 23 6 0.3530 -4.4595 4.1880 24 7 -0.0405 -5.4685 4.9361 25 14 -0.5139 -2.8096 4.3140 26 1 0.2232 -1.9342 5.2605 27 1 -0.5541 -2.1681 2.9754 28 1 -1.8997 -3.0149 4.8064 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 1.6958 -2.0073 0.0005 33 1 4.0685 0.9423 -0.0021 34 1 7.3223 -2.8828 -1.0130 35 1 7.8044 -2.1354 0.5289 36 1 6.8263 -3.6226 0.5281 37 1 4.0072 -3.9363 2.0094 38 1 4.2167 -6.4071 0.6574 39 1 2.5071 -5.9116 0.6586 40 1 2.0831 -7.9915 1.8974 41 1 3.4612 -8.4805 2.9825 42 1 2.5566 -7.1879 4.8672 43 1 0.9665 -7.4562 4.0333 44 1 -0.7808 -5.3554 5.5525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038429017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:32 Heat of formation + Delta-G solvation = 1.554322 kcal Electronic energy + Delta-G solvation = -27612.810886 eV Core-core repulsion = 23759.680834 eV Total energy + Delta-G solvation = -3853.130053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39239 -40.62210 -40.33882 -39.46617 -35.85805 -35.38314 -34.20810 -32.54667 -31.98495 -30.22512 -29.88122 -28.96412 -26.92764 -25.35190 -24.22683 -23.14071 -22.75989 -21.18084 -20.82209 -20.32015 -19.28918 -18.46509 -17.41844 -17.21643 -17.06001 -17.04226 -16.80510 -16.47678 -15.94418 -15.69822 -15.43595 -15.32807 -14.89909 -14.63088 -14.53254 -13.91956 -13.72285 -13.60942 -13.53394 -13.44483 -13.29999 -13.16529 -12.93964 -12.75681 -12.64381 -12.54055 -12.29750 -11.92024 -11.84089 -11.61990 -11.27898 -10.99537 -10.82174 -10.79398 -9.96382 -9.34452 -8.84474 -8.74377 -7.85590 -5.15924 1.04070 1.09437 1.43511 1.47417 1.53631 1.58170 1.94105 1.98818 2.30477 2.48661 2.64214 3.36541 3.50441 3.69741 3.83891 3.92108 4.02869 4.20738 4.24087 4.37539 4.39895 4.44217 4.54165 4.68949 4.71981 4.73012 4.77870 4.89177 4.89592 4.94511 5.01188 5.09653 5.13826 5.17304 5.37470 5.50416 5.62089 5.76281 5.77456 5.89881 5.99429 6.38605 6.61503 6.67078 6.96687 7.03234 7.28420 7.67617 8.68208 9.32714 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.005563 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.910223 B = 5031.648333 C = 7156.413337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.569 6.569 4 N -0.642 5.642 5 C 0.067 3.933 6 C -0.032 4.032 7 N -0.525 5.525 8 H 0.438 0.562 9 C 0.101 3.899 10 C -0.089 4.089 11 C -0.272 4.272 12 C 0.597 3.403 13 O -0.584 6.584 14 N -0.700 5.700 15 C 0.129 3.871 16 C 0.133 3.867 17 H 0.066 0.934 18 C -0.133 4.133 19 C 0.145 3.855 20 N -0.627 5.627 21 C -0.202 4.202 22 H 0.087 0.913 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.958 3.042 26 H -0.295 1.295 27 H -0.256 1.256 28 H -0.301 1.301 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.414 0.586 33 H 0.190 0.810 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.405 0.595 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.020 0.980 43 H 0.032 0.968 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.417 6.625 -9.326 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.296 3.704 3 O -0.448 6.448 4 N -0.285 5.285 5 C -0.034 4.034 6 C -0.163 4.163 7 N -0.124 5.124 8 H 0.279 0.721 9 C -0.019 4.019 10 C -0.146 4.146 11 C -0.284 4.284 12 C 0.384 3.616 13 O -0.465 6.465 14 N -0.349 5.349 15 C 0.005 3.995 16 C 0.026 3.974 17 H 0.084 0.916 18 C -0.172 4.172 19 C 0.019 3.981 20 N -0.353 5.353 21 C -0.331 4.331 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.787 3.213 26 H -0.222 1.222 27 H -0.181 1.181 28 H -0.228 1.228 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.250 0.750 33 H 0.207 0.793 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.240 0.760 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.474 7.293 -9.979 17.560 hybrid contribution -1.006 0.769 1.038 1.637 sum 11.468 8.062 -8.941 16.626 Atomic orbital electron populations 1.21928 0.87969 1.06762 1.05994 1.21561 0.92186 0.82140 0.74539 1.90526 1.71067 1.32083 1.51170 1.43183 1.03982 1.10195 1.71109 1.18171 0.82900 0.92973 1.09331 1.21987 0.82114 0.99043 1.13116 1.41281 1.07989 1.05689 1.57409 0.72131 1.20679 0.95161 0.84022 1.02043 1.20551 0.91173 0.98525 1.04335 1.19965 0.93193 0.90869 1.24407 1.17538 0.75724 0.85308 0.83063 1.90731 1.53570 1.69383 1.32781 1.46034 1.67651 1.12818 1.08385 1.21651 0.99251 0.81060 0.97574 1.22549 0.90957 0.92719 0.91130 0.91632 1.23532 0.99687 0.95307 0.98677 1.22036 0.97813 0.84666 0.93548 1.45999 1.26263 1.11296 1.51776 1.19155 1.08238 0.91031 1.14640 0.89569 1.25516 1.00925 1.00345 0.99369 1.70019 1.30038 1.31060 1.29167 0.85381 0.77038 0.80300 0.78569 1.22233 1.18065 1.22784 0.88118 0.86872 0.88245 0.75005 0.79336 0.89306 0.87824 0.90435 0.75972 0.90035 0.93668 0.90056 0.88337 0.96202 0.94901 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 10.30 71.24 0.73 -2.78 16 2 C 0.51 14.64 7.91 87.66 0.69 15.34 16 3 O -0.57 -18.89 14.32 -3.11 -0.04 -18.93 16 4 N -0.64 -19.65 5.46 -299.23 -1.63 -21.29 16 5 C 0.07 2.09 7.22 39.31 0.28 2.38 16 6 C -0.03 -0.87 10.79 83.18 0.90 0.03 16 7 N -0.53 -10.31 5.90 -181.38 -1.07 -11.38 16 8 H 0.44 4.85 8.96 -92.70 -0.83 4.02 16 9 C 0.10 2.29 7.21 42.04 0.30 2.60 16 10 C -0.09 -1.35 10.25 71.24 0.73 -0.62 16 11 C -0.27 -8.32 6.09 -18.75 -0.11 -8.43 16 12 C 0.60 20.53 7.32 86.58 0.63 21.16 16 13 O -0.58 -23.84 17.11 -4.15 -0.07 -23.91 16 14 N -0.70 -22.98 5.33 -466.66 -2.49 -25.46 16 15 C 0.13 4.33 5.52 86.38 0.48 4.81 16 16 C 0.13 4.69 4.10 41.80 0.17 4.86 16 17 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 18 C -0.13 -4.39 8.04 31.02 0.25 -4.14 16 19 C 0.15 6.48 7.33 83.27 0.61 7.09 16 20 N -0.63 -29.39 3.65 -713.32 -2.60 -31.99 16 21 C -0.20 -10.48 10.54 84.03 0.89 -9.60 16 22 H 0.09 4.25 7.61 -2.91 -0.02 4.23 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 24 N -0.95 -56.46 11.61 21.65 0.25 -56.21 16 25 Si 0.96 44.10 29.56 68.60 2.03 46.13 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.41 12.52 8.83 -92.71 -0.82 11.70 16 33 H 0.19 5.25 5.86 -2.91 -0.02 5.23 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.08 1.33 7.95 -2.39 -0.02 1.31 16 37 H 0.41 13.31 8.46 -92.70 -0.78 12.52 16 38 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.68 8.12 -2.38 -0.02 2.66 16 41 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.03 1.68 7.30 -2.39 -0.02 1.67 16 44 H 0.24 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -75.72 375.18 0.02 -75.69 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -1.37 Total: 37.98 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 7.02 Total: 29.38 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -7.54 Total: -146.33 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.12 Total: -42.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.72 0.02 -75.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038429017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.247 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds