Wall clock time and date at job start Tue Mar 31 2020 12:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48505 * 109.46821 * 270.00381 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99947 * 3 2 1 6 6 H 1.48490 * 109.47223 * 150.00141 * 3 2 1 7 7 C 1.38810 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99976 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.47074 * 136.05765 * 359.95146 * 9 7 2 11 11 C 1.53493 * 87.98747 * 207.15383 * 10 9 7 12 12 C 1.47069 * 136.06051 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.46778 * 267.62866 * 12 9 7 14 14 C 1.53004 * 113.46487 * 38.01006 * 12 9 7 15 15 N 1.46498 * 109.46851 * 284.58938 * 14 12 9 16 16 C 1.34776 * 119.99895 * 180.02562 * 15 14 12 17 17 O 1.21599 * 120.00012 * 0.02562 * 16 15 14 18 18 C 1.47426 * 120.00122 * 179.97438 * 16 15 14 19 19 C 1.38051 * 126.41687 * 0.02615 * 18 16 15 20 20 N 1.34258 * 107.41898 * 179.97438 * 19 18 16 21 21 H 0.96999 * 125.74920 * 180.02562 * 20 19 18 22 22 N 1.39937 * 108.49318 * 359.97438 * 20 19 18 23 23 C 1.30454 * 108.89376 * 359.75584 * 22 20 19 24 24 C 1.50707 * 125.98448 * 180.26253 * 23 22 20 25 25 H 1.09004 * 110.80054 * 180.84501 * 24 23 22 26 26 C 1.54808 * 110.90595 * 57.21491 * 24 23 22 27 27 C 1.54106 * 104.18514 * 220.91647 * 26 24 23 28 28 O 1.43741 * 107.29168 * 357.97624 * 27 26 24 29 29 C 1.44417 * 107.00494 * 26.48439 * 28 27 26 30 30 H 0.96998 * 119.99859 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.46722 * 321.93733 * 10 9 7 32 32 H 1.09003 * 113.46448 * 92.31791 * 10 9 7 33 33 H 1.09000 * 114.20832 * 220.34681 * 11 10 9 34 34 H 1.09005 * 114.20737 * 87.51825 * 11 10 9 35 35 H 1.08997 * 109.47262 * 44.58808 * 14 12 9 36 36 H 1.08995 * 109.47048 * 164.59421 * 14 12 9 37 37 H 0.96997 * 120.00590 * 359.97438 * 15 14 12 38 38 H 1.07996 * 126.28773 * 359.93617 * 19 18 16 39 39 H 1.08998 * 110.48950 * 339.59756 * 26 24 23 40 40 H 1.09005 * 110.48600 * 102.11521 * 26 24 23 41 41 H 1.09004 * 109.87474 * 117.39318 * 27 26 24 42 42 H 1.09000 * 109.88083 * 238.55085 * 27 26 24 43 43 H 1.09001 * 110.65581 * 201.48073 * 29 28 27 44 44 H 1.09004 * 110.60048 * 78.47139 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0878 -2.7949 0.0008 11 6 0.3423 -4.0921 0.6995 12 6 1.6798 -3.8154 -0.0015 13 1 1.7435 -4.2462 -1.0007 14 6 2.9005 -4.1407 0.8617 15 7 4.1173 -3.7098 0.1689 16 6 5.3220 -3.8966 0.7436 17 8 5.3990 -4.4233 1.8369 18 6 6.5465 -3.4634 0.0462 19 6 6.6133 -2.8559 -1.1917 20 7 7.9092 -2.6267 -1.4575 21 1 8.2577 -2.2087 -2.2604 22 7 8.6722 -3.0914 -0.3804 23 6 7.8710 -3.5862 0.5225 24 6 8.2859 -4.1868 1.8410 25 1 7.4166 -4.5374 2.3973 26 6 9.1046 -3.1729 2.6766 27 6 10.2346 -4.0186 3.2954 28 8 10.0259 -5.3791 2.8810 29 6 9.3067 -5.3338 1.6295 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7220 -2.1588 0.6183 32 1 -0.4948 -2.9531 -0.9979 33 1 -0.1729 -4.9839 0.3429 34 1 0.3842 -4.0216 1.7865 35 1 2.8210 -3.6185 1.8151 36 1 2.9445 -5.2153 1.0386 37 1 4.0560 -3.2906 -0.7037 38 1 5.7769 -2.6107 -1.8293 39 1 9.5180 -2.3950 2.0346 40 1 8.4840 -2.7324 3.4570 41 1 11.2011 -3.6657 2.9356 42 1 10.1946 -3.9520 4.3826 43 1 8.7917 -6.2772 1.4476 44 1 9.9825 -5.0995 0.8070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038564124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:49 Heat of formation + Delta-G solvation = 48.163047 kcal Electronic energy + Delta-G solvation = -27125.884527 eV Core-core repulsion = 23274.775580 eV Total energy + Delta-G solvation = -3851.108947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61339 -39.22093 -39.04996 -37.95516 -34.20072 -33.48095 -32.27376 -30.83513 -30.57966 -28.98567 -28.06511 -27.39726 -23.58594 -23.51610 -23.21583 -22.31042 -21.68990 -20.02975 -19.56362 -19.29017 -18.47381 -16.82794 -16.48384 -16.13429 -15.98418 -15.44293 -15.41361 -15.17987 -14.95767 -14.28815 -14.05451 -13.80216 -13.77663 -13.59231 -13.11450 -13.09830 -12.89757 -11.94240 -11.89866 -11.68403 -11.56623 -11.52470 -11.15639 -11.13045 -11.02414 -10.82192 -10.81416 -10.61236 -10.02208 -9.87422 -9.84407 -9.62681 -9.55987 -9.21467 -8.95330 -8.86453 -8.49491 -6.94929 -5.82311 -3.14830 1.43273 2.02461 2.51936 3.31113 3.37587 3.39865 3.56910 3.68416 3.81809 4.33690 4.38017 4.47049 4.64318 4.80445 4.93657 4.98834 5.13600 5.23394 5.28788 5.34084 5.39221 5.46615 5.55233 5.61352 5.67231 5.73418 5.74832 5.89054 5.90128 6.10222 6.11538 6.28529 6.33626 6.39828 6.57114 6.70474 6.73529 6.88160 6.95164 7.18452 7.35915 7.36315 7.53411 7.92188 7.93828 8.61206 8.97345 9.64846 10.58114 11.34909 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003490 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.082493 B = 8019.849211 C = 8843.747021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.711 5.711 16 C 0.589 3.411 17 O -0.551 6.551 18 C -0.277 4.277 19 C 0.108 3.892 20 N -0.461 5.461 21 H 0.444 0.556 22 N -0.297 5.297 23 C 0.143 3.857 24 C -0.054 4.054 25 H 0.134 0.866 26 C -0.146 4.146 27 C 0.050 3.950 28 O -0.377 6.377 29 C 0.060 3.940 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.399 0.601 38 H 0.189 0.811 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.391 -8.154 -2.229 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.360 5.360 16 C 0.376 3.624 17 O -0.430 6.430 18 C -0.292 4.292 19 C -0.045 4.045 20 N -0.165 5.165 21 H 0.289 0.711 22 N -0.120 5.120 23 C -0.025 4.025 24 C -0.074 4.074 25 H 0.152 0.848 26 C -0.184 4.184 27 C -0.027 4.027 28 O -0.296 6.296 29 C -0.017 4.017 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.206 0.794 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.732 -8.088 -1.634 17.764 hybrid contribution -0.458 1.723 -1.188 2.142 sum 15.274 -6.365 -2.821 16.786 Atomic orbital electron populations 1.69823 1.04962 1.25288 1.56342 1.24763 0.95612 0.97367 1.02583 0.86208 0.78777 0.83869 0.77456 1.21723 1.21564 1.20689 1.18828 0.89961 0.81351 1.43960 0.90233 1.45671 1.02612 0.98575 1.85891 1.22028 0.88702 0.90243 0.96486 1.23661 0.96898 0.99006 1.00431 1.22424 0.92113 0.87682 0.95833 0.93516 1.21800 0.82838 0.98483 0.97005 1.45788 1.05706 1.61833 1.22651 1.17197 0.82186 0.78282 0.84758 1.90673 1.86697 1.45093 1.20555 1.20378 0.94851 1.16289 0.97695 1.23263 0.88544 0.95787 0.96864 1.46056 1.04484 1.47890 1.18091 0.71115 1.77054 1.18526 1.19938 0.96447 1.21942 0.89929 0.95583 0.95074 1.21546 1.01037 0.94911 0.89944 0.84819 1.23005 0.96996 0.98489 0.99937 1.23148 0.97508 0.82013 1.00027 1.88863 1.76939 1.25341 1.38441 1.23592 0.92285 0.98831 0.86984 0.93659 0.91015 0.95764 0.92341 0.90150 0.90983 0.92154 0.76734 0.79411 0.90314 0.89852 0.92409 0.89721 0.88624 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 11.51 55.49 0.64 -25.66 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.21 -5.50 10.55 -15.06 -0.16 -5.66 16 8 H 0.08 1.95 7.68 -52.49 -0.40 1.55 16 9 N -0.60 -14.05 3.65 -176.96 -0.65 -14.70 16 10 C 0.15 3.34 7.39 -8.50 -0.06 3.28 16 11 C -0.16 -2.82 8.03 -26.21 -0.21 -3.03 16 12 C 0.13 2.33 4.10 -72.38 -0.30 2.03 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.14 5.53 -4.04 -0.02 2.11 16 15 N -0.71 -11.42 5.40 -61.39 -0.33 -11.75 16 16 C 0.59 9.81 7.81 -12.52 -0.10 9.72 16 17 O -0.55 -10.61 14.60 5.28 0.08 -10.53 16 18 C -0.28 -3.92 6.13 -105.07 -0.64 -4.56 16 19 C 0.11 1.16 11.52 -16.56 -0.19 0.97 16 20 N -0.46 -4.48 7.29 30.85 0.22 -4.26 16 21 H 0.44 2.66 8.96 -182.72 -1.64 1.02 16 22 N -0.30 -3.74 12.29 33.90 0.42 -3.33 16 23 C 0.14 1.97 5.84 -82.01 -0.48 1.49 16 24 C -0.05 -0.72 3.47 -89.76 -0.31 -1.03 16 25 H 0.13 2.06 5.72 -51.93 -0.30 1.76 16 26 C -0.15 -1.69 6.59 -25.20 -0.17 -1.86 16 27 C 0.05 0.53 7.70 37.73 0.29 0.82 16 28 O -0.38 -4.90 11.52 -35.23 -0.41 -5.30 16 29 C 0.06 0.73 7.17 38.21 0.27 1.01 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 5.85 7.40 -40.82 -0.30 5.55 16 38 H 0.19 1.46 7.46 -52.49 -0.39 1.06 16 39 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.76 7.90 -51.93 -0.41 0.34 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -33.29 364.13 -9.31 -42.60 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.57 Total: 6.09 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.17 Total: 5.01 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.30 Total: -59.69 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.33 Total: -15.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.29 -9.31 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.761 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds