Wall clock time and date at job start Tue Mar 31 2020 12:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48505 * 109.46821 * 270.00381 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99947 * 3 2 1 6 6 H 1.48490 * 109.47223 * 150.00141 * 3 2 1 7 7 C 1.38810 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99976 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.47074 * 136.05765 * 359.95146 * 9 7 2 11 11 C 1.53493 * 87.98747 * 207.15383 * 10 9 7 12 12 C 1.47069 * 136.06051 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.46778 * 267.62866 * 12 9 7 14 14 C 1.53004 * 113.46487 * 38.01006 * 12 9 7 15 15 N 1.46498 * 109.46851 * 284.58938 * 14 12 9 16 16 C 1.34776 * 119.99895 * 180.02562 * 15 14 12 17 17 O 1.21599 * 120.00012 * 0.02562 * 16 15 14 18 18 C 1.47426 * 120.00122 * 179.97438 * 16 15 14 19 19 C 1.38051 * 126.41687 * 0.02615 * 18 16 15 20 20 N 1.34258 * 107.41898 * 179.97438 * 19 18 16 21 21 H 0.96999 * 125.74920 * 180.02562 * 20 19 18 22 22 N 1.39937 * 108.49318 * 359.97438 * 20 19 18 23 23 C 1.30454 * 108.89376 * 359.75584 * 22 20 19 24 24 C 1.50707 * 125.98448 * 180.26253 * 23 22 20 25 25 H 1.09004 * 110.80054 * 180.84501 * 24 23 22 26 26 C 1.54808 * 110.90595 * 57.21491 * 24 23 22 27 27 C 1.54106 * 104.18514 * 220.91647 * 26 24 23 28 28 O 1.43741 * 107.29168 * 357.97624 * 27 26 24 29 29 C 1.44417 * 107.00494 * 26.48439 * 28 27 26 30 30 H 0.96998 * 119.99859 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.46722 * 321.93733 * 10 9 7 32 32 H 1.09003 * 113.46448 * 92.31791 * 10 9 7 33 33 H 1.09000 * 114.20832 * 220.34681 * 11 10 9 34 34 H 1.09005 * 114.20737 * 87.51825 * 11 10 9 35 35 H 1.08997 * 109.47262 * 44.58808 * 14 12 9 36 36 H 1.08995 * 109.47048 * 164.59421 * 14 12 9 37 37 H 0.96997 * 120.00590 * 359.97438 * 15 14 12 38 38 H 1.07996 * 126.28773 * 359.93617 * 19 18 16 39 39 H 1.08998 * 110.48950 * 339.59756 * 26 24 23 40 40 H 1.09005 * 110.48600 * 102.11521 * 26 24 23 41 41 H 1.09004 * 109.87474 * 117.39318 * 27 26 24 42 42 H 1.09000 * 109.88083 * 238.55085 * 27 26 24 43 43 H 1.09001 * 110.65581 * 201.48073 * 29 28 27 44 44 H 1.09004 * 110.60048 * 78.47139 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0878 -2.7949 0.0008 11 6 0.3423 -4.0921 0.6995 12 6 1.6798 -3.8154 -0.0015 13 1 1.7435 -4.2462 -1.0007 14 6 2.9005 -4.1407 0.8617 15 7 4.1173 -3.7098 0.1689 16 6 5.3220 -3.8966 0.7436 17 8 5.3990 -4.4233 1.8369 18 6 6.5465 -3.4634 0.0462 19 6 6.6133 -2.8559 -1.1917 20 7 7.9092 -2.6267 -1.4575 21 1 8.2577 -2.2087 -2.2604 22 7 8.6722 -3.0914 -0.3804 23 6 7.8710 -3.5862 0.5225 24 6 8.2859 -4.1868 1.8410 25 1 7.4166 -4.5374 2.3973 26 6 9.1046 -3.1729 2.6766 27 6 10.2346 -4.0186 3.2954 28 8 10.0259 -5.3791 2.8810 29 6 9.3067 -5.3338 1.6295 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7220 -2.1588 0.6183 32 1 -0.4948 -2.9531 -0.9979 33 1 -0.1729 -4.9839 0.3429 34 1 0.3842 -4.0216 1.7865 35 1 2.8210 -3.6185 1.8151 36 1 2.9445 -5.2153 1.0386 37 1 4.0560 -3.2906 -0.7037 38 1 5.7769 -2.6107 -1.8293 39 1 9.5180 -2.3950 2.0346 40 1 8.4840 -2.7324 3.4570 41 1 11.2011 -3.6657 2.9356 42 1 10.1946 -3.9520 4.3826 43 1 8.7917 -6.2772 1.4476 44 1 9.9825 -5.0995 0.8070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038564124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:48 Heat of formation + Delta-G solvation = 23.543355 kcal Electronic energy + Delta-G solvation = -27126.952117 eV Core-core repulsion = 23274.775580 eV Total energy + Delta-G solvation = -3852.176537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57092 -40.46330 -40.14091 -39.46164 -35.51811 -34.51038 -34.19801 -31.85255 -31.55919 -29.92708 -29.87796 -28.80639 -25.35358 -24.53784 -24.44173 -23.31150 -22.96178 -21.30118 -20.85554 -20.50680 -19.58269 -18.48249 -17.43240 -17.34182 -17.05605 -16.91287 -16.74681 -16.32528 -16.05868 -15.81460 -15.37366 -15.34087 -14.85494 -14.68735 -14.55000 -14.28099 -14.02080 -13.55255 -13.27706 -12.95057 -12.88223 -12.64739 -12.61854 -12.53849 -12.42126 -12.33589 -12.07920 -11.87869 -11.76279 -11.58507 -11.12392 -10.82583 -10.75371 -10.62468 -10.51567 -10.10160 -9.71254 -8.85065 -7.84015 -5.15047 0.50752 0.97418 1.44213 1.47561 1.54218 1.72064 2.32555 2.47288 2.50597 2.90799 3.37708 3.39714 3.49805 3.55457 3.70230 3.95704 3.96591 4.03942 4.11796 4.18865 4.29556 4.35187 4.38499 4.41003 4.55357 4.70752 4.71757 4.76399 4.81106 4.83735 4.94385 4.98844 5.10096 5.13475 5.16099 5.30262 5.38005 5.55674 5.64134 5.79614 5.83023 6.00714 6.20087 6.42945 6.71478 6.97237 7.36316 7.68403 8.68357 9.33949 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003490 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.082493 B = 8019.849211 C = 8843.747021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.202 4.202 8 H 0.090 0.910 9 N -0.628 5.628 10 C 0.142 3.858 11 C -0.137 4.137 12 C 0.136 3.864 13 H 0.073 0.927 14 C 0.133 3.867 15 N -0.707 5.707 16 C 0.587 3.413 17 O -0.585 6.585 18 C -0.313 4.313 19 C 0.134 3.866 20 N -0.441 5.441 21 H 0.462 0.538 22 N -0.307 5.307 23 C 0.134 3.866 24 C -0.057 4.057 25 H 0.108 0.892 26 C -0.142 4.142 27 C 0.049 3.951 28 O -0.395 6.395 29 C 0.066 3.934 30 H 0.244 0.756 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.222 0.778 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.091 -8.770 -3.668 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.330 4.330 8 H 0.108 0.892 9 N -0.354 5.354 10 C 0.017 3.983 11 C -0.176 4.176 12 C 0.030 3.970 13 H 0.090 0.910 14 C 0.008 3.992 15 N -0.357 5.357 16 C 0.376 3.624 17 O -0.467 6.467 18 C -0.328 4.328 19 C -0.020 4.020 20 N -0.148 5.148 21 H 0.311 0.689 22 N -0.130 5.130 23 C -0.034 4.034 24 C -0.078 4.078 25 H 0.126 0.874 26 C -0.180 4.180 27 C -0.028 4.028 28 O -0.314 6.314 29 C -0.011 4.011 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.242 0.758 38 H 0.239 0.761 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.485 -8.723 -3.113 19.787 hybrid contribution -0.965 1.855 -0.773 2.229 sum 16.521 -6.869 -3.886 18.309 Atomic orbital electron populations 1.70011 1.06344 1.25064 1.59073 1.25495 0.96325 1.00417 1.04152 0.85256 0.77540 0.80191 0.77458 1.20952 1.23074 1.19934 1.19218 0.90637 0.82331 1.40824 0.89200 1.45984 1.03537 1.00073 1.85840 1.22038 0.87888 0.92072 0.96338 1.23494 0.96063 0.98075 0.99929 1.22558 0.92796 0.84619 0.97059 0.90972 1.21569 0.83141 0.99118 0.95406 1.45702 1.05226 1.61905 1.22848 1.17543 0.82880 0.77558 0.84396 1.90657 1.87215 1.46694 1.22138 1.20289 0.93897 1.19161 0.99492 1.23652 0.89522 0.93235 0.95640 1.46104 1.04104 1.46580 1.17993 0.68870 1.77016 1.18822 1.20230 0.96947 1.21982 0.90091 0.95919 0.95388 1.21442 1.00453 0.95801 0.90115 0.87374 1.22976 0.97078 0.98297 0.99669 1.23290 0.97730 0.80846 1.00892 1.88836 1.77056 1.26714 1.38805 1.23560 0.92026 0.98590 0.86922 0.94727 0.94841 0.95860 0.88292 0.90455 0.94175 0.90330 0.75792 0.76137 0.90195 0.90146 0.90853 0.88363 0.88432 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.12 11.51 21.65 0.25 -55.87 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.97 44.15 29.55 68.60 2.03 46.18 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.20 -10.25 10.55 84.03 0.89 -9.37 16 8 H 0.09 4.26 7.68 -2.91 -0.02 4.24 16 9 N -0.63 -28.84 3.65 -713.79 -2.61 -31.44 16 10 C 0.14 6.27 7.39 83.18 0.61 6.89 16 11 C -0.14 -4.51 8.03 30.93 0.25 -4.26 16 12 C 0.14 4.65 4.10 41.80 0.17 4.82 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.13 4.39 5.53 86.38 0.48 4.86 16 15 N -0.71 -21.48 5.40 -466.38 -2.52 -24.00 16 16 C 0.59 19.08 7.81 86.66 0.68 19.76 16 17 O -0.58 -22.75 14.60 -4.03 -0.06 -22.81 16 18 C -0.31 -8.37 6.13 -20.15 -0.12 -8.49 16 19 C 0.13 2.44 11.52 84.28 0.97 3.41 16 20 N -0.44 -7.18 7.29 -56.32 -0.41 -7.59 16 21 H 0.46 3.80 8.96 -213.43 -1.91 1.89 16 22 N -0.31 -7.10 12.29 -46.67 -0.57 -7.67 16 23 C 0.13 3.54 5.84 43.52 0.25 3.80 16 24 C -0.06 -1.52 3.47 -10.24 -0.04 -1.55 16 25 H 0.11 3.44 5.72 -2.38 -0.01 3.43 16 26 C -0.14 -3.21 6.59 31.59 0.21 -3.00 16 27 C 0.05 0.98 7.70 72.36 0.56 1.54 16 28 O -0.39 -9.97 11.52 -148.98 -1.72 -11.69 16 29 C 0.07 1.57 7.17 72.66 0.52 2.09 16 30 H 0.24 14.14 8.31 -92.71 -0.77 13.36 16 31 H 0.03 1.72 7.12 -2.39 -0.02 1.70 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 2.61 8.12 -2.38 -0.02 2.59 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.41 10.84 7.40 -92.71 -0.69 10.15 16 38 H 0.22 2.44 7.46 -2.91 -0.02 2.42 16 39 H 0.08 1.77 7.72 -2.39 -0.02 1.75 16 40 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 1.57 7.90 -2.38 -0.02 1.55 16 Total: -1.00 -73.75 364.13 -1.27 -75.02 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -1.55 Total: 22.79 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 5.89 Total: 17.08 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -5.86 Total: -126.57 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.78 Total: -34.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.75 -1.27 -75.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.560 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds