Wall clock time and date at job start Tue Mar 31 2020 12:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48511 * 109.46720 * 274.79453 * 3 2 1 5 5 H 1.48502 * 109.47262 * 34.79327 * 3 2 1 6 6 H 1.48498 * 109.47342 * 154.79766 * 3 2 1 7 7 C 1.38810 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99971 * 187.48419 * 7 2 1 9 9 N 1.36935 * 119.99769 * 7.49617 * 7 2 1 10 10 C 1.47069 * 136.06184 * 6.96326 * 9 7 2 11 11 C 1.53494 * 87.98372 * 152.84905 * 10 9 7 12 12 C 1.47073 * 136.05359 * 186.92364 * 9 7 2 13 13 H 1.08998 * 113.46957 * 92.31273 * 12 9 7 14 14 C 1.52995 * 113.46777 * 321.92891 * 12 9 7 15 15 N 1.46506 * 109.47434 * 74.50717 * 14 12 9 16 16 C 1.34769 * 120.00052 * 179.97438 * 15 14 12 17 17 O 1.21596 * 120.00477 * 0.02562 * 16 15 14 18 18 C 1.47430 * 119.99605 * 179.97438 * 16 15 14 19 19 C 1.38046 * 126.41796 * 359.96478 * 18 16 15 20 20 N 1.34256 * 107.41808 * 180.02562 * 19 18 16 21 21 H 0.96999 * 125.75656 * 179.97438 * 20 19 18 22 22 N 1.39936 * 108.49234 * 359.75209 * 20 19 18 23 23 C 1.30444 * 108.89464 * 0.42488 * 22 20 19 24 24 C 1.50701 * 125.98759 * 179.84864 * 23 22 20 25 25 H 1.09004 * 110.75328 * 177.66970 * 24 23 22 26 26 C 1.55569 * 110.83828 * 53.99392 * 24 23 22 27 27 C 1.54945 * 100.82724 * 207.68762 * 26 24 23 28 28 O 1.43643 * 105.22187 * 36.43986 * 27 26 24 29 29 C 1.43237 * 109.97416 * 335.52412 * 28 27 26 30 30 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.08997 * 113.46813 * 267.63463 * 10 9 7 32 32 H 1.08996 * 113.46059 * 38.01477 * 10 9 7 33 33 H 1.09005 * 114.21307 * 272.47987 * 11 10 9 34 34 H 1.09005 * 114.20386 * 139.65851 * 11 10 9 35 35 H 1.09004 * 109.47189 * 314.50581 * 14 12 9 36 36 H 1.09001 * 109.47305 * 194.50810 * 14 12 9 37 37 H 0.97003 * 119.99193 * 359.97438 * 15 14 12 38 38 H 1.07998 * 126.28655 * 0.05064 * 19 18 16 39 39 H 1.09000 * 111.22008 * 89.78881 * 26 24 23 40 40 H 1.08996 * 111.13524 * 325.54823 * 26 24 23 41 41 H 1.09002 * 110.30547 * 277.47790 * 27 26 24 42 42 H 1.09001 * 110.31109 * 155.41078 * 27 26 24 43 43 H 1.09003 * 109.82777 * 121.22377 * 29 28 27 44 44 H 1.08999 * 109.82914 * 242.19533 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3963 2.1049 -1.3953 5 1 1.5020 2.6214 0.7989 6 1 3.5948 1.4131 0.5962 7 6 2.0103 -1.2021 0.0005 8 1 3.0834 -1.2060 0.1224 9 7 1.3343 -2.3830 -0.1536 10 6 -0.0479 -2.7796 -0.4619 11 6 0.5148 -4.0770 -1.0586 12 6 1.6714 -3.8129 -0.0846 13 1 1.5168 -4.2482 0.9027 14 6 3.0467 -4.1435 -0.6678 15 7 4.0900 -3.7046 0.2623 16 6 5.3888 -3.8943 -0.0436 17 8 5.6947 -4.4294 -1.0917 18 6 6.4386 -3.4520 0.8922 19 6 6.2428 -2.8326 2.1103 20 7 7.4535 -2.5983 2.6412 21 1 7.6249 -2.1720 3.4954 22 7 8.4263 -3.0774 1.7567 23 6 7.8337 -3.5823 0.7101 24 6 8.5171 -4.2018 -0.4817 25 1 7.7837 -4.5808 -1.1936 26 6 9.4948 -5.3268 -0.0360 27 6 10.5310 -5.2848 -1.1872 28 8 10.6562 -3.8959 -1.5315 29 6 9.4672 -3.1900 -1.1577 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6615 -2.9398 0.4247 32 1 -0.5303 -2.1360 -1.1974 33 1 0.7905 -4.0025 -2.1105 34 1 -0.0708 -4.9666 -0.8263 35 1 3.1701 -3.6296 -1.6211 36 1 3.1268 -5.2196 -0.8221 37 1 3.8459 -3.2774 1.0983 38 1 5.2907 -2.5829 2.5546 39 1 8.9921 -6.2931 0.0051 40 1 9.9600 -5.0871 0.9202 41 1 10.1694 -5.8555 -2.0426 42 1 11.4893 -5.6785 -0.8483 43 1 9.7156 -2.3918 -0.4582 44 1 8.9914 -2.7715 -2.0445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038564127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:52 Heat of formation + Delta-G solvation = 47.312610 kcal Electronic energy + Delta-G solvation = -27135.167708 eV Core-core repulsion = 23284.021883 eV Total energy + Delta-G solvation = -3851.145824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61179 -39.21935 -39.06364 -37.96971 -34.20808 -33.48327 -32.29042 -30.84805 -30.59856 -29.02847 -28.07602 -27.40745 -23.52541 -23.46395 -23.19989 -22.39379 -21.71561 -20.02747 -19.58665 -19.30398 -18.47184 -16.81735 -16.57607 -16.14429 -16.09189 -15.44792 -15.41553 -15.02665 -14.86273 -14.27779 -14.07340 -13.79181 -13.77185 -13.57469 -13.25726 -13.09900 -12.91019 -11.92892 -11.92524 -11.71914 -11.55231 -11.52496 -11.23262 -11.17804 -11.03502 -10.89545 -10.83600 -10.58484 -10.06153 -9.89438 -9.76282 -9.60851 -9.47640 -9.22214 -8.95636 -8.83927 -8.50187 -6.96304 -5.85360 -3.16219 1.44133 2.02169 2.52874 3.32015 3.37650 3.40262 3.56776 3.66601 3.78780 4.27361 4.37635 4.45937 4.56946 4.83578 4.89614 5.09272 5.12498 5.20062 5.29102 5.33030 5.38728 5.48615 5.53665 5.57037 5.68501 5.73633 5.78232 5.84852 5.87702 6.08617 6.13769 6.25331 6.31314 6.37747 6.54957 6.70416 6.87560 6.88295 6.96069 7.15442 7.34391 7.37043 7.48219 7.89550 7.93245 8.59764 8.95966 9.63473 10.57680 11.33022 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003504 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.067289 B = 7988.380655 C = 8816.119240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.158 3.842 11 C -0.162 4.162 12 C 0.126 3.874 13 H 0.047 0.953 14 C 0.124 3.876 15 N -0.710 5.710 16 C 0.590 3.410 17 O -0.553 6.553 18 C -0.278 4.278 19 C 0.109 3.891 20 N -0.460 5.460 21 H 0.444 0.556 22 N -0.295 5.295 23 C 0.142 3.858 24 C -0.054 4.054 25 H 0.133 0.867 26 C -0.144 4.144 27 C 0.052 3.948 28 O -0.384 6.384 29 C 0.064 3.936 30 H 0.254 0.746 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.400 0.600 38 H 0.189 0.811 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.080 -10.350 4.527 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.033 3.967 11 C -0.201 4.201 12 C 0.018 3.982 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.377 3.623 17 O -0.433 6.433 18 C -0.293 4.293 19 C -0.044 4.044 20 N -0.165 5.165 21 H 0.289 0.711 22 N -0.117 5.117 23 C -0.026 4.026 24 C -0.075 4.075 25 H 0.151 0.849 26 C -0.183 4.183 27 C -0.024 4.024 28 O -0.303 6.303 29 C -0.014 4.014 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.206 0.794 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.590 -10.005 4.273 18.200 hybrid contribution -0.846 1.354 0.977 1.871 sum 13.745 -8.652 5.250 17.068 Atomic orbital electron populations 1.69853 1.04997 1.25374 1.56017 1.24796 0.95573 0.97503 1.02371 0.86196 0.78496 0.83833 0.77734 1.21508 1.21767 1.20749 1.18859 0.90365 0.81528 1.43601 0.90153 1.45761 1.06310 0.98579 1.81984 1.21904 0.88370 0.90033 0.96439 1.23659 0.98059 0.99097 0.99268 1.22410 0.91554 0.87887 0.96329 0.93557 1.21795 0.86482 0.98373 0.93436 1.45798 1.05169 1.61283 1.23693 1.17191 0.81794 0.78308 0.85047 1.90659 1.82166 1.45060 1.25379 1.20367 0.94290 1.16170 0.98503 1.23276 0.91343 0.95669 0.94068 1.46070 1.03771 1.47358 1.19287 0.71084 1.77076 1.13176 1.19411 1.02029 1.21891 0.90908 0.95653 0.94145 1.21580 0.97826 0.94926 0.93136 0.84886 1.23370 0.96164 0.99067 0.99672 1.23361 0.99274 0.83438 0.96338 1.88384 1.38140 1.20154 1.83658 1.23168 0.84544 0.94423 0.99234 0.93641 0.95279 0.92257 0.90172 0.92241 0.91043 0.92175 0.76597 0.79370 0.89561 0.89914 0.91861 0.89763 0.90987 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.22 11.87 55.49 0.66 -25.56 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.22 -5.55 10.54 -15.06 -0.16 -5.71 16 8 H 0.08 1.98 7.62 -52.48 -0.40 1.58 16 9 N -0.60 -13.97 3.63 -176.98 -0.64 -14.61 16 10 C 0.16 3.48 7.21 -8.50 -0.06 3.42 16 11 C -0.16 -2.79 8.03 -26.22 -0.21 -3.00 16 12 C 0.13 2.29 4.10 -72.39 -0.30 1.99 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.11 5.52 -4.04 -0.02 2.09 16 15 N -0.71 -11.38 5.32 -61.38 -0.33 -11.70 16 16 C 0.59 9.75 7.81 -12.52 -0.10 9.65 16 17 O -0.55 -10.46 14.60 5.28 0.08 -10.38 16 18 C -0.28 -3.95 6.13 -105.06 -0.64 -4.59 16 19 C 0.11 1.19 11.52 -16.56 -0.19 1.00 16 20 N -0.46 -4.61 7.29 30.85 0.22 -4.39 16 21 H 0.44 2.80 8.96 -182.72 -1.64 1.16 16 22 N -0.29 -3.81 12.28 33.90 0.42 -3.39 16 23 C 0.14 1.98 5.82 -82.02 -0.48 1.50 16 24 C -0.05 -0.71 3.35 -89.68 -0.30 -1.01 16 25 H 0.13 1.96 5.72 -51.93 -0.30 1.66 16 26 C -0.14 -1.55 6.62 -24.34 -0.16 -1.71 16 27 C 0.05 0.54 7.77 38.18 0.30 0.84 16 28 O -0.38 -5.12 11.36 -35.23 -0.40 -5.52 16 29 C 0.06 0.84 7.39 37.88 0.28 1.12 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.46 7.64 -51.93 -0.40 1.06 16 33 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 5.94 7.40 -40.82 -0.30 5.63 16 38 H 0.19 1.52 7.46 -52.49 -0.39 1.13 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -33.21 364.58 -9.26 -42.47 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.59 Total: 5.87 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.14 Total: 5.34 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.33 Total: -59.66 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.32 Total: -15.91 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.21 -9.26 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.781 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds