Wall clock time and date at job start Tue Mar 31 2020 12:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48511 * 109.46720 * 274.79453 * 3 2 1 5 5 H 1.48502 * 109.47262 * 34.79327 * 3 2 1 6 6 H 1.48498 * 109.47342 * 154.79766 * 3 2 1 7 7 C 1.38810 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99971 * 187.48419 * 7 2 1 9 9 N 1.36935 * 119.99769 * 7.49617 * 7 2 1 10 10 C 1.47069 * 136.06184 * 6.96326 * 9 7 2 11 11 C 1.53494 * 87.98372 * 152.84905 * 10 9 7 12 12 C 1.47073 * 136.05359 * 186.92364 * 9 7 2 13 13 H 1.08998 * 113.46957 * 92.31273 * 12 9 7 14 14 C 1.52995 * 113.46777 * 321.92891 * 12 9 7 15 15 N 1.46506 * 109.47434 * 74.50717 * 14 12 9 16 16 C 1.34769 * 120.00052 * 179.97438 * 15 14 12 17 17 O 1.21596 * 120.00477 * 0.02562 * 16 15 14 18 18 C 1.47430 * 119.99605 * 179.97438 * 16 15 14 19 19 C 1.38046 * 126.41796 * 359.96478 * 18 16 15 20 20 N 1.34256 * 107.41808 * 180.02562 * 19 18 16 21 21 H 0.96999 * 125.75656 * 179.97438 * 20 19 18 22 22 N 1.39936 * 108.49234 * 359.75209 * 20 19 18 23 23 C 1.30444 * 108.89464 * 0.42488 * 22 20 19 24 24 C 1.50701 * 125.98759 * 179.84864 * 23 22 20 25 25 H 1.09004 * 110.75328 * 177.66970 * 24 23 22 26 26 C 1.55569 * 110.83828 * 53.99392 * 24 23 22 27 27 C 1.54945 * 100.82724 * 207.68762 * 26 24 23 28 28 O 1.43643 * 105.22187 * 36.43986 * 27 26 24 29 29 C 1.43237 * 109.97416 * 335.52412 * 28 27 26 30 30 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.08997 * 113.46813 * 267.63463 * 10 9 7 32 32 H 1.08996 * 113.46059 * 38.01477 * 10 9 7 33 33 H 1.09005 * 114.21307 * 272.47987 * 11 10 9 34 34 H 1.09005 * 114.20386 * 139.65851 * 11 10 9 35 35 H 1.09004 * 109.47189 * 314.50581 * 14 12 9 36 36 H 1.09001 * 109.47305 * 194.50810 * 14 12 9 37 37 H 0.97003 * 119.99193 * 359.97438 * 15 14 12 38 38 H 1.07998 * 126.28655 * 0.05064 * 19 18 16 39 39 H 1.09000 * 111.22008 * 89.78881 * 26 24 23 40 40 H 1.08996 * 111.13524 * 325.54823 * 26 24 23 41 41 H 1.09002 * 110.30547 * 277.47790 * 27 26 24 42 42 H 1.09001 * 110.31109 * 155.41078 * 27 26 24 43 43 H 1.09003 * 109.82777 * 121.22377 * 29 28 27 44 44 H 1.08999 * 109.82914 * 242.19533 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3963 2.1049 -1.3953 5 1 1.5020 2.6214 0.7989 6 1 3.5948 1.4131 0.5962 7 6 2.0103 -1.2021 0.0005 8 1 3.0834 -1.2060 0.1224 9 7 1.3343 -2.3830 -0.1536 10 6 -0.0479 -2.7796 -0.4619 11 6 0.5148 -4.0770 -1.0586 12 6 1.6714 -3.8129 -0.0846 13 1 1.5168 -4.2482 0.9027 14 6 3.0467 -4.1435 -0.6678 15 7 4.0900 -3.7046 0.2623 16 6 5.3888 -3.8943 -0.0436 17 8 5.6947 -4.4294 -1.0917 18 6 6.4386 -3.4520 0.8922 19 6 6.2428 -2.8326 2.1103 20 7 7.4535 -2.5983 2.6412 21 1 7.6249 -2.1720 3.4954 22 7 8.4263 -3.0774 1.7567 23 6 7.8337 -3.5823 0.7101 24 6 8.5171 -4.2018 -0.4817 25 1 7.7837 -4.5808 -1.1936 26 6 9.4948 -5.3268 -0.0360 27 6 10.5310 -5.2848 -1.1872 28 8 10.6562 -3.8959 -1.5315 29 6 9.4672 -3.1900 -1.1577 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6615 -2.9398 0.4247 32 1 -0.5303 -2.1360 -1.1974 33 1 0.7905 -4.0025 -2.1105 34 1 -0.0708 -4.9666 -0.8263 35 1 3.1701 -3.6296 -1.6211 36 1 3.1268 -5.2196 -0.8221 37 1 3.8459 -3.2774 1.0983 38 1 5.2907 -2.5829 2.5546 39 1 8.9921 -6.2931 0.0051 40 1 9.9600 -5.0871 0.9202 41 1 10.1694 -5.8555 -2.0426 42 1 11.4893 -5.6785 -0.8483 43 1 9.7156 -2.3918 -0.4582 44 1 8.9914 -2.7715 -2.0445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038564127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:51 Heat of formation + Delta-G solvation = 22.853457 kcal Electronic energy + Delta-G solvation = -27136.228336 eV Core-core repulsion = 23284.021883 eV Total energy + Delta-G solvation = -3852.206453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57982 -40.46757 -40.15209 -39.46496 -35.51202 -34.51673 -34.21424 -31.85297 -31.58448 -29.97600 -29.89690 -28.81180 -25.35816 -24.50292 -24.37575 -23.34107 -22.99611 -21.29313 -20.86613 -20.53403 -19.58541 -18.46608 -17.51665 -17.35967 -17.07797 -17.03804 -16.75291 -16.29776 -15.84701 -15.79448 -15.40120 -15.35969 -14.86122 -14.59310 -14.56198 -14.34507 -14.10526 -13.55689 -13.26265 -13.01345 -12.84150 -12.70301 -12.67455 -12.56080 -12.39538 -12.26370 -12.11922 -11.91102 -11.80958 -11.58624 -11.12409 -10.80860 -10.70715 -10.63427 -10.43534 -10.10168 -9.71510 -8.86398 -7.87250 -5.16366 0.50323 0.96673 1.43511 1.47911 1.53545 1.71398 2.32667 2.46755 2.50041 2.86818 3.32922 3.37744 3.48975 3.54154 3.62469 3.94971 3.97992 4.02003 4.15812 4.21359 4.27719 4.35418 4.37512 4.41177 4.56711 4.70322 4.72067 4.77061 4.83324 4.88959 4.92083 4.94744 5.09637 5.16470 5.16812 5.28221 5.35956 5.55992 5.60720 5.78423 5.95433 5.97290 6.19396 6.42548 6.71182 6.96064 7.35595 7.67079 8.67907 9.32106 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003504 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.067289 B = 7988.380655 C = 8816.119240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.962 3.038 4 H -0.299 1.299 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.203 4.203 8 H 0.090 0.910 9 N -0.627 5.627 10 C 0.150 3.850 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.069 0.931 14 C 0.133 3.867 15 N -0.708 5.708 16 C 0.589 3.411 17 O -0.584 6.584 18 C -0.313 4.313 19 C 0.133 3.867 20 N -0.442 5.442 21 H 0.462 0.538 22 N -0.308 5.308 23 C 0.133 3.867 24 C -0.056 4.056 25 H 0.114 0.886 26 C -0.135 4.135 27 C 0.048 3.952 28 O -0.402 6.402 29 C 0.067 3.933 30 H 0.244 0.756 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.406 0.594 38 H 0.221 0.779 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 -11.654 5.997 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.227 1.227 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.331 4.331 8 H 0.108 0.892 9 N -0.353 5.353 10 C 0.024 3.976 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.008 3.992 15 N -0.357 5.357 16 C 0.378 3.622 17 O -0.466 6.466 18 C -0.327 4.327 19 C -0.021 4.021 20 N -0.148 5.148 21 H 0.311 0.689 22 N -0.131 5.131 23 C -0.035 4.035 24 C -0.077 4.077 25 H 0.132 0.868 26 C -0.173 4.173 27 C -0.027 4.027 28 O -0.321 6.321 29 C -0.010 4.010 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.242 0.758 38 H 0.238 0.762 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.930 -11.335 5.785 20.389 hybrid contribution -1.226 1.684 0.545 2.153 sum 14.704 -9.652 6.330 18.693 Atomic orbital electron populations 1.70016 1.06361 1.25180 1.58802 1.25488 0.96241 1.00416 1.03968 0.85291 0.78203 0.80449 0.76817 1.22749 1.22516 1.18731 1.19224 0.90962 0.82534 1.40387 0.89237 1.46076 1.07107 1.00121 1.82018 1.21922 0.87964 0.91995 0.95730 1.23492 0.97050 0.97969 0.98931 1.22539 0.92431 0.84722 0.97513 0.91341 1.21580 0.86209 0.99157 0.92261 1.45723 1.04925 1.61375 1.23695 1.17495 0.82133 0.77646 0.84970 1.90643 1.82607 1.46525 1.26824 1.20292 0.93789 1.18841 0.99824 1.23656 0.92528 0.93268 0.92668 1.46114 1.03116 1.46143 1.19468 0.68920 1.77038 1.14002 1.19806 1.02226 1.21977 0.91038 0.95930 0.94523 1.21493 0.97677 0.95664 0.92858 0.86799 1.23329 0.95629 0.98739 0.99642 1.23575 1.00411 0.82141 0.96615 1.88356 1.38151 1.21706 1.83934 1.23078 0.84650 0.94476 0.98825 0.94657 0.95884 0.95927 0.90090 0.88243 0.93896 0.90201 0.75822 0.76250 0.88399 0.89991 0.90986 0.87569 0.91520 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.93 11.87 21.65 0.26 -55.68 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.96 44.27 29.56 68.60 2.03 46.29 16 4 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.20 -10.27 10.54 84.03 0.89 -9.39 16 8 H 0.09 4.27 7.62 -2.91 -0.02 4.24 16 9 N -0.63 -28.66 3.63 -713.85 -2.59 -31.26 16 10 C 0.15 6.56 7.21 83.18 0.60 7.16 16 11 C -0.14 -4.37 8.03 30.93 0.25 -4.12 16 12 C 0.13 4.55 4.10 41.79 0.17 4.72 16 13 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 14 C 0.13 4.29 5.52 86.38 0.48 4.76 16 15 N -0.71 -21.29 5.32 -466.38 -2.48 -23.77 16 16 C 0.59 18.80 7.81 86.67 0.68 19.47 16 17 O -0.58 -21.99 14.60 -4.02 -0.06 -22.05 16 18 C -0.31 -8.36 6.13 -20.15 -0.12 -8.48 16 19 C 0.13 2.51 11.52 84.28 0.97 3.48 16 20 N -0.44 -7.56 7.29 -56.32 -0.41 -7.97 16 21 H 0.46 4.25 8.96 -213.43 -1.91 2.34 16 22 N -0.31 -7.39 12.28 -46.68 -0.57 -7.97 16 23 C 0.13 3.55 5.82 43.52 0.25 3.80 16 24 C -0.06 -1.46 3.35 -10.18 -0.03 -1.50 16 25 H 0.11 3.41 5.72 -2.39 -0.01 3.40 16 26 C -0.14 -2.74 6.62 32.14 0.21 -2.52 16 27 C 0.05 0.93 7.77 72.65 0.56 1.49 16 28 O -0.40 -10.48 11.36 -148.98 -1.69 -12.17 16 29 C 0.07 1.77 7.39 72.45 0.54 2.30 16 30 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.02 1.13 7.64 -2.39 -0.02 1.11 16 33 H 0.08 2.62 8.12 -2.38 -0.02 2.60 16 34 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 10.98 7.40 -92.71 -0.69 10.29 16 38 H 0.22 2.63 7.46 -2.91 -0.02 2.61 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.67 7.86 -2.39 -0.02 1.65 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.80 7.69 -2.39 -0.02 1.78 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.34 364.58 -1.18 -74.52 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -1.56 Total: 22.10 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.90 Total: 17.96 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.80 Total: -126.65 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.75 Total: -34.22 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -73.34 -1.18 -74.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.372 kcal (2) G-P(sol) polarization free energy of solvation -73.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds