Wall clock time and date at job start Tue Mar 31 2020 12:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99572 * 2 1 4 4 H 1.48495 * 109.47169 * 239.99917 * 3 2 1 5 5 H 1.48503 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47175 * 119.99999 * 3 2 1 7 7 C 1.38811 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99426 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.47064 * 136.05567 * 0.04959 * 9 7 2 11 11 C 1.53494 * 87.98492 * 152.84382 * 10 9 7 12 12 C 1.47065 * 136.05622 * 179.97438 * 9 7 2 13 13 H 1.09006 * 113.46330 * 92.31886 * 12 9 7 14 14 C 1.52997 * 113.46881 * 321.93831 * 12 9 7 15 15 N 1.46505 * 109.47212 * 74.50280 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21598 * 120.00473 * 0.02562 * 16 15 14 18 18 C 1.47433 * 119.99504 * 180.02562 * 16 15 14 19 19 C 1.38037 * 126.41818 * 0.02708 * 18 16 15 20 20 N 1.34253 * 107.42024 * 179.97438 * 19 18 16 21 21 H 0.97005 * 125.75469 * 180.02562 * 20 19 18 22 22 N 1.39930 * 108.49255 * 0.02562 * 20 19 18 23 23 C 1.30449 * 108.89874 * 359.74785 * 22 20 19 24 24 C 1.50701 * 125.99265 * 180.26471 * 23 22 20 25 25 H 1.08994 * 110.74876 * 179.44472 * 24 23 22 26 26 C 1.55301 * 110.84432 * 302.91774 * 24 23 22 27 27 C 1.55210 * 100.82369 * 152.18221 * 26 24 23 28 28 O 1.43646 * 105.25999 * 323.81104 * 27 26 24 29 29 C 1.43241 * 109.96839 * 24.28710 * 28 27 26 30 30 H 0.97003 * 120.00561 * 359.97438 * 1 2 3 31 31 H 1.09004 * 113.46644 * 267.62420 * 10 9 7 32 32 H 1.09000 * 113.47047 * 38.06822 * 10 9 7 33 33 H 1.08998 * 114.21073 * 272.48476 * 11 10 9 34 34 H 1.09010 * 114.20843 * 139.65044 * 11 10 9 35 35 H 1.09002 * 109.47153 * 314.50272 * 14 12 9 36 36 H 1.09001 * 109.46832 * 194.50463 * 14 12 9 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 1.08004 * 126.29243 * 359.94121 * 19 18 16 39 39 H 1.09004 * 111.12029 * 270.24054 * 26 24 23 40 40 H 1.08991 * 111.12799 * 34.40340 * 26 24 23 41 41 H 1.08997 * 110.36923 * 204.79666 * 27 26 24 42 42 H 1.09004 * 110.21463 * 82.75120 * 27 26 24 43 43 H 1.08997 * 109.83380 * 238.76998 * 29 28 27 44 44 H 1.09006 * 109.90185 * 117.84077 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.0876 -2.7949 -0.0010 11 6 0.3421 -4.0917 -0.7007 12 6 1.6801 -3.8154 -0.0015 13 1 1.7462 -4.2468 0.9974 14 6 2.8987 -4.1400 -0.8678 15 7 4.1155 -3.6899 -0.1873 16 6 5.3185 -3.8728 -0.7668 17 8 5.3939 -4.4110 -1.8546 18 6 6.5431 -3.4203 -0.0817 19 6 6.6115 -2.7983 1.1487 20 7 7.9068 -2.5549 1.4045 21 1 8.2563 -2.1255 2.2010 22 7 8.6677 -3.0251 0.3284 23 6 7.8668 -3.5466 -0.5595 24 6 8.2806 -4.1718 -1.8668 25 1 7.4107 -4.5372 -2.4125 26 6 9.0912 -3.1657 -2.7285 27 6 9.9745 -4.1367 -3.5566 28 8 10.2942 -5.2137 -2.6614 29 6 9.3002 -5.3074 -1.6343 30 1 -0.4851 0.8400 0.0004 31 1 -0.4936 -2.9546 0.9979 32 1 -0.7223 -2.1587 -0.6178 33 1 0.3832 -4.0208 -1.7876 34 1 -0.1728 -4.9839 -0.3440 35 1 2.8089 -3.6300 -1.8269 36 1 2.9513 -5.2163 -1.0321 37 1 4.0554 -3.2609 0.6805 38 1 5.7765 -2.5521 1.7879 39 1 8.4339 -2.5814 -3.3725 40 1 9.7034 -2.5166 -2.1026 41 1 10.8847 -3.6350 -3.8850 42 1 9.4186 -4.5114 -4.4161 43 1 9.7669 -5.1908 -0.6562 44 1 8.7976 -6.2730 -1.6912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038564128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:55 Heat of formation + Delta-G solvation = 48.150772 kcal Electronic energy + Delta-G solvation = -27138.134643 eV Core-core repulsion = 23287.025164 eV Total energy + Delta-G solvation = -3851.109479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61808 -39.21930 -39.06250 -37.96571 -34.21188 -33.49123 -32.28144 -30.83814 -30.60717 -29.02376 -28.07544 -27.40384 -23.52143 -23.47889 -23.19511 -22.38241 -21.71108 -20.03483 -19.58592 -19.29674 -18.47820 -16.83565 -16.56519 -16.14531 -16.10047 -15.44897 -15.40608 -15.01330 -14.87780 -14.29880 -14.07823 -13.78734 -13.76054 -13.56891 -13.27396 -13.07918 -12.90159 -11.94463 -11.91582 -11.72890 -11.56731 -11.50861 -11.16755 -11.15865 -11.02309 -10.89068 -10.82124 -10.63036 -10.03784 -9.89033 -9.77104 -9.61856 -9.48162 -9.22218 -8.96037 -8.86865 -8.50274 -6.95609 -5.82742 -3.15406 1.43439 2.02004 2.52256 3.30754 3.37009 3.38523 3.56412 3.66910 3.77999 4.26233 4.37350 4.47458 4.57062 4.82894 4.89922 5.11249 5.12723 5.19450 5.28719 5.33244 5.38721 5.48172 5.54886 5.58824 5.70125 5.73705 5.80224 5.83499 5.88202 6.09255 6.13854 6.25775 6.32105 6.38681 6.56403 6.69719 6.86399 6.87540 6.95433 7.17547 7.35242 7.36613 7.52523 7.91597 7.92904 8.59733 8.96639 9.64264 10.57566 11.34380 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.003497 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.858926 B = 8005.295429 C = 8826.194673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.710 5.710 16 C 0.590 3.410 17 O -0.552 6.552 18 C -0.278 4.278 19 C 0.108 3.892 20 N -0.460 5.460 21 H 0.444 0.556 22 N -0.295 5.295 23 C 0.142 3.858 24 C -0.055 4.055 25 H 0.133 0.867 26 C -0.145 4.145 27 C 0.053 3.947 28 O -0.384 6.384 29 C 0.064 3.936 30 H 0.254 0.746 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.399 0.601 38 H 0.189 0.811 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.632 -8.183 1.455 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.377 3.623 17 O -0.432 6.432 18 C -0.293 4.293 19 C -0.044 4.044 20 N -0.165 5.165 21 H 0.289 0.711 22 N -0.117 5.117 23 C -0.026 4.026 24 C -0.075 4.075 25 H 0.151 0.849 26 C -0.183 4.183 27 C -0.024 4.024 28 O -0.304 6.304 29 C -0.013 4.013 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.206 0.794 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.063 -8.049 0.963 17.106 hybrid contribution -0.607 1.615 1.086 2.038 sum 14.456 -6.434 2.049 15.955 Atomic orbital electron populations 1.69810 1.04962 1.25425 1.56225 1.24762 0.95607 0.97362 1.02540 0.86285 0.78560 0.83570 0.77827 1.21105 1.21510 1.21363 1.18777 0.89923 0.81362 1.44148 0.90294 1.45651 1.02610 0.98553 1.85925 1.22028 0.88701 0.90232 0.96473 1.23657 0.96898 0.99024 1.00428 1.22416 0.92121 0.87700 0.95828 0.93499 1.21804 0.82870 0.98279 0.97175 1.45789 1.05797 1.61106 1.23236 1.17191 0.82182 0.78354 0.84622 1.90661 1.86682 1.44973 1.20887 1.20370 0.94831 1.16007 0.98068 1.23264 0.88545 0.95771 0.96863 1.46068 1.04578 1.47444 1.18395 0.71086 1.77076 1.18522 1.19329 0.96757 1.21896 0.89913 0.95639 0.95130 1.21530 1.00818 0.94797 0.90369 0.84900 1.23371 0.98339 0.98052 0.98577 1.23414 0.99088 0.87057 0.92804 1.88375 1.48259 1.53061 1.40676 1.23156 0.88458 0.97850 0.91820 0.93592 0.95763 0.91009 0.90161 0.92338 0.91005 0.92171 0.76681 0.79397 0.89348 0.89974 0.89702 0.91811 0.91000 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 11.51 55.49 0.64 -25.60 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.21 -5.51 10.55 -15.06 -0.16 -5.67 16 8 H 0.08 1.92 7.50 -52.49 -0.39 1.53 16 9 N -0.60 -14.00 3.65 -177.01 -0.65 -14.65 16 10 C 0.15 3.34 7.39 -8.51 -0.06 3.27 16 11 C -0.16 -2.81 8.03 -26.23 -0.21 -3.02 16 12 C 0.13 2.31 4.10 -72.40 -0.30 2.02 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.12 5.52 -4.04 -0.02 2.10 16 15 N -0.71 -11.37 5.32 -61.38 -0.33 -11.70 16 16 C 0.59 9.76 7.81 -12.52 -0.10 9.66 16 17 O -0.55 -10.49 14.60 5.28 0.08 -10.42 16 18 C -0.28 -3.93 6.13 -105.06 -0.64 -4.57 16 19 C 0.11 1.17 11.52 -16.57 -0.19 0.98 16 20 N -0.46 -4.57 7.29 30.85 0.22 -4.35 16 21 H 0.44 2.76 8.96 -182.72 -1.64 1.12 16 22 N -0.29 -3.80 12.27 33.90 0.42 -3.38 16 23 C 0.14 1.98 5.82 -82.02 -0.48 1.50 16 24 C -0.05 -0.72 3.34 -89.83 -0.30 -1.02 16 25 H 0.13 1.97 5.71 -51.93 -0.30 1.67 16 26 C -0.15 -1.67 6.63 -24.34 -0.16 -1.83 16 27 C 0.05 0.56 7.78 38.33 0.30 0.86 16 28 O -0.38 -5.01 11.36 -35.23 -0.40 -5.41 16 29 C 0.06 0.80 7.40 37.88 0.28 1.08 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 33 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 5.87 7.30 -40.82 -0.30 5.57 16 38 H 0.19 1.48 7.46 -52.48 -0.39 1.09 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.97 7.93 -51.93 -0.41 0.55 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.90 7.62 -51.93 -0.40 0.50 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -33.13 363.71 -9.26 -42.39 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.56 Total: 6.23 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.14 Total: 5.10 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.31 Total: -59.67 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.32 Total: -15.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.13 -9.26 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.539 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds