Wall clock time and date at job start Tue Mar 31 2020 12:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99572 * 2 1 4 4 H 1.48495 * 109.47169 * 239.99917 * 3 2 1 5 5 H 1.48503 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47175 * 119.99999 * 3 2 1 7 7 C 1.38811 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99426 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.47064 * 136.05567 * 0.04959 * 9 7 2 11 11 C 1.53494 * 87.98492 * 152.84382 * 10 9 7 12 12 C 1.47065 * 136.05622 * 179.97438 * 9 7 2 13 13 H 1.09006 * 113.46330 * 92.31886 * 12 9 7 14 14 C 1.52997 * 113.46881 * 321.93831 * 12 9 7 15 15 N 1.46505 * 109.47212 * 74.50280 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21598 * 120.00473 * 0.02562 * 16 15 14 18 18 C 1.47433 * 119.99504 * 180.02562 * 16 15 14 19 19 C 1.38037 * 126.41818 * 0.02708 * 18 16 15 20 20 N 1.34253 * 107.42024 * 179.97438 * 19 18 16 21 21 H 0.97005 * 125.75469 * 180.02562 * 20 19 18 22 22 N 1.39930 * 108.49255 * 0.02562 * 20 19 18 23 23 C 1.30449 * 108.89874 * 359.74785 * 22 20 19 24 24 C 1.50701 * 125.99265 * 180.26471 * 23 22 20 25 25 H 1.08994 * 110.74876 * 179.44472 * 24 23 22 26 26 C 1.55301 * 110.84432 * 302.91774 * 24 23 22 27 27 C 1.55210 * 100.82369 * 152.18221 * 26 24 23 28 28 O 1.43646 * 105.25999 * 323.81104 * 27 26 24 29 29 C 1.43241 * 109.96839 * 24.28710 * 28 27 26 30 30 H 0.97003 * 120.00561 * 359.97438 * 1 2 3 31 31 H 1.09004 * 113.46644 * 267.62420 * 10 9 7 32 32 H 1.09000 * 113.47047 * 38.06822 * 10 9 7 33 33 H 1.08998 * 114.21073 * 272.48476 * 11 10 9 34 34 H 1.09010 * 114.20843 * 139.65044 * 11 10 9 35 35 H 1.09002 * 109.47153 * 314.50272 * 14 12 9 36 36 H 1.09001 * 109.46832 * 194.50463 * 14 12 9 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 1.08004 * 126.29243 * 359.94121 * 19 18 16 39 39 H 1.09004 * 111.12029 * 270.24054 * 26 24 23 40 40 H 1.08991 * 111.12799 * 34.40340 * 26 24 23 41 41 H 1.08997 * 110.36923 * 204.79666 * 27 26 24 42 42 H 1.09004 * 110.21463 * 82.75120 * 27 26 24 43 43 H 1.08997 * 109.83380 * 238.76998 * 29 28 27 44 44 H 1.09006 * 109.90185 * 117.84077 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.0876 -2.7949 -0.0010 11 6 0.3421 -4.0917 -0.7007 12 6 1.6801 -3.8154 -0.0015 13 1 1.7462 -4.2468 0.9974 14 6 2.8987 -4.1400 -0.8678 15 7 4.1155 -3.6899 -0.1873 16 6 5.3185 -3.8728 -0.7668 17 8 5.3939 -4.4110 -1.8546 18 6 6.5431 -3.4203 -0.0817 19 6 6.6115 -2.7983 1.1487 20 7 7.9068 -2.5549 1.4045 21 1 8.2563 -2.1255 2.2010 22 7 8.6677 -3.0251 0.3284 23 6 7.8668 -3.5466 -0.5595 24 6 8.2806 -4.1718 -1.8668 25 1 7.4107 -4.5372 -2.4125 26 6 9.0912 -3.1657 -2.7285 27 6 9.9745 -4.1367 -3.5566 28 8 10.2942 -5.2137 -2.6614 29 6 9.3002 -5.3074 -1.6343 30 1 -0.4851 0.8400 0.0004 31 1 -0.4936 -2.9546 0.9979 32 1 -0.7223 -2.1587 -0.6178 33 1 0.3832 -4.0208 -1.7876 34 1 -0.1728 -4.9839 -0.3440 35 1 2.8089 -3.6300 -1.8269 36 1 2.9513 -5.2163 -1.0321 37 1 4.0554 -3.2609 0.6805 38 1 5.7765 -2.5521 1.7879 39 1 8.4339 -2.5814 -3.3725 40 1 9.7034 -2.5166 -2.1026 41 1 10.8847 -3.6350 -3.8850 42 1 9.4186 -4.5114 -4.4161 43 1 9.7669 -5.1908 -0.6562 44 1 8.7976 -6.2730 -1.6912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038564128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:54 Heat of formation + Delta-G solvation = 23.784640 kcal Electronic energy + Delta-G solvation = -27139.191237 eV Core-core repulsion = 23287.025164 eV Total energy + Delta-G solvation = -3852.166074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58253 -40.46700 -40.14643 -39.46246 -35.51806 -34.52383 -34.19759 -31.85080 -31.59908 -29.96078 -29.89353 -28.80891 -25.35009 -24.50000 -24.36688 -23.34264 -23.01245 -21.29689 -20.86111 -20.53374 -19.59011 -18.48219 -17.51117 -17.35483 -17.05701 -17.03003 -16.75960 -16.29543 -15.84652 -15.81316 -15.37924 -15.35007 -14.85471 -14.59465 -14.57301 -14.33686 -14.11179 -13.55517 -13.27250 -12.91417 -12.87235 -12.69517 -12.66018 -12.54349 -12.40516 -12.33099 -12.11760 -11.91687 -11.78354 -11.59712 -11.12776 -10.81612 -10.70596 -10.63489 -10.42386 -10.10498 -9.71740 -8.84943 -7.83624 -5.14785 0.50293 0.96590 1.44469 1.48593 1.53291 1.71382 2.32476 2.46554 2.50839 2.86741 3.31600 3.39335 3.49562 3.54865 3.62593 3.95702 3.98400 4.01423 4.15686 4.21542 4.26115 4.35334 4.37316 4.41038 4.56667 4.70182 4.71714 4.76642 4.83015 4.88462 4.91480 4.95099 5.10151 5.15358 5.16116 5.27759 5.37936 5.55392 5.64148 5.79657 5.94995 6.00880 6.19501 6.42475 6.71066 6.97219 7.35539 7.68710 8.68639 9.34134 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.003497 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.858926 B = 8005.295429 C = 8826.194673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.203 4.203 8 H 0.091 0.909 9 N -0.628 5.628 10 C 0.142 3.858 11 C -0.137 4.137 12 C 0.136 3.864 13 H 0.073 0.927 14 C 0.133 3.867 15 N -0.707 5.707 16 C 0.589 3.411 17 O -0.584 6.584 18 C -0.313 4.313 19 C 0.134 3.866 20 N -0.442 5.442 21 H 0.462 0.538 22 N -0.308 5.308 23 C 0.133 3.867 24 C -0.057 4.057 25 H 0.113 0.887 26 C -0.140 4.140 27 C 0.052 3.948 28 O -0.400 6.400 29 C 0.070 3.930 30 H 0.244 0.756 31 H 0.023 0.977 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.222 0.778 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.177 -8.833 2.687 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.331 4.331 8 H 0.109 0.891 9 N -0.354 5.354 10 C 0.017 3.983 11 C -0.176 4.176 12 C 0.029 3.971 13 H 0.090 0.910 14 C 0.008 3.992 15 N -0.357 5.357 16 C 0.377 3.623 17 O -0.467 6.467 18 C -0.328 4.328 19 C -0.021 4.021 20 N -0.148 5.148 21 H 0.311 0.689 22 N -0.131 5.131 23 C -0.035 4.035 24 C -0.078 4.078 25 H 0.131 0.869 26 C -0.179 4.179 27 C -0.024 4.024 28 O -0.320 6.320 29 C -0.008 4.008 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.242 0.758 38 H 0.239 0.761 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.661 -8.719 2.235 18.937 hybrid contribution -1.065 1.753 0.730 2.177 sum 15.596 -6.966 2.965 17.337 Atomic orbital electron populations 1.70003 1.06353 1.25146 1.59005 1.25494 0.96310 1.00414 1.04123 0.85352 0.77208 0.79891 0.78118 1.21392 1.22847 1.19546 1.19186 0.90653 0.82322 1.40959 0.89149 1.45967 1.03526 1.00061 1.85867 1.22038 0.87905 0.92078 0.96320 1.23489 0.96061 0.98071 0.99937 1.22549 0.92839 0.84631 0.97042 0.91015 1.21578 0.83111 0.98988 0.95557 1.45705 1.05340 1.61196 1.23423 1.17510 0.82820 0.77678 0.84266 1.90645 1.87170 1.46474 1.22364 1.20287 0.93896 1.18737 0.99833 1.23659 0.89464 0.93281 0.95687 1.46112 1.04229 1.46212 1.18256 0.68896 1.77039 1.18959 1.19736 0.97370 1.21978 0.90093 0.95920 0.95481 1.21446 1.00304 0.95483 0.90525 0.86884 1.23337 0.98211 0.97887 0.98427 1.23569 1.00016 0.86415 0.92427 1.88349 1.48577 1.53941 1.41125 1.23098 0.88192 0.97784 0.91685 0.94725 0.95893 0.94836 0.90434 0.88313 0.94095 0.90294 0.75802 0.76141 0.89208 0.90175 0.87684 0.91034 0.91161 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.00 11.51 21.65 0.25 -55.75 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 43.92 29.55 68.60 2.03 45.95 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.20 -10.26 10.55 84.03 0.89 -9.37 16 8 H 0.09 4.24 7.50 -2.91 -0.02 4.22 16 9 N -0.63 -28.69 3.65 -713.92 -2.61 -31.29 16 10 C 0.14 6.25 7.39 83.18 0.61 6.86 16 11 C -0.14 -4.48 8.03 30.92 0.25 -4.23 16 12 C 0.14 4.61 4.10 41.79 0.17 4.78 16 13 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 14 C 0.13 4.33 5.52 86.38 0.48 4.81 16 15 N -0.71 -21.29 5.32 -466.37 -2.48 -23.77 16 16 C 0.59 18.87 7.81 86.67 0.68 19.54 16 17 O -0.58 -22.22 14.60 -4.02 -0.06 -22.28 16 18 C -0.31 -8.34 6.13 -20.15 -0.12 -8.46 16 19 C 0.13 2.47 11.52 84.28 0.97 3.44 16 20 N -0.44 -7.44 7.29 -56.32 -0.41 -7.85 16 21 H 0.46 4.11 8.96 -213.42 -1.91 2.20 16 22 N -0.31 -7.38 12.27 -46.67 -0.57 -7.95 16 23 C 0.13 3.55 5.82 43.52 0.25 3.81 16 24 C -0.06 -1.49 3.34 -10.28 -0.03 -1.52 16 25 H 0.11 3.42 5.71 -2.39 -0.01 3.41 16 26 C -0.14 -3.14 6.63 32.14 0.21 -2.92 16 27 C 0.05 1.04 7.78 72.74 0.57 1.60 16 28 O -0.40 -10.10 11.36 -148.98 -1.69 -11.79 16 29 C 0.07 1.70 7.40 72.45 0.54 2.24 16 30 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.71 7.12 -2.39 -0.02 1.70 16 33 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 34 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.41 10.83 7.30 -92.71 -0.68 10.15 16 38 H 0.22 2.51 7.46 -2.91 -0.02 2.48 16 39 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 40 H 0.08 1.81 7.93 -2.39 -0.02 1.79 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.07 1.72 7.62 -2.39 -0.02 1.70 16 44 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -73.14 363.71 -1.17 -74.31 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -1.55 Total: 23.23 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.92 Total: 17.21 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -5.82 Total: -126.63 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.75 Total: -34.07 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.14 -1.17 -74.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.093 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds