Wall clock time and date at job start Tue Mar 31 2020 12:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48502 * 109.47090 * 274.98893 * 3 2 1 5 5 H 1.48500 * 109.46969 * 34.99285 * 3 2 1 6 6 H 1.48507 * 109.47162 * 154.99371 * 3 2 1 7 7 C 1.38818 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99644 * 185.06085 * 7 2 1 9 9 N 1.36938 * 119.99798 * 5.07027 * 7 2 1 10 10 C 1.47582 * 134.48771 * 353.48219 * 9 7 2 11 11 C 1.53956 * 86.11192 * 204.66210 * 10 9 7 12 12 C 1.47920 * 134.50379 * 173.52147 * 9 7 2 13 13 H 1.09003 * 113.76640 * 269.57796 * 12 9 7 14 14 C 1.53005 * 113.86804 * 41.06656 * 12 9 7 15 15 N 1.46503 * 109.47343 * 281.40292 * 14 12 9 16 16 C 1.34765 * 119.99717 * 180.02562 * 15 14 12 17 17 O 1.21602 * 120.00393 * 359.97438 * 16 15 14 18 18 C 1.47436 * 119.99932 * 180.02562 * 16 15 14 19 19 C 1.38038 * 126.41400 * 359.68919 * 18 16 15 20 20 N 1.34261 * 107.42018 * 179.87059 * 19 18 16 21 21 H 0.96992 * 125.75427 * 180.11132 * 20 19 18 22 22 N 1.39936 * 108.48585 * 0.39256 * 20 19 18 23 23 C 1.30443 * 108.90051 * 359.74981 * 22 20 19 24 24 C 1.50699 * 125.98889 * 179.97438 * 23 22 20 25 25 H 1.09000 * 110.45616 * 177.39691 * 24 23 22 26 26 C 1.54509 * 110.51472 * 300.00397 * 24 23 22 27 27 C 1.54484 * 104.06198 * 118.64456 * 26 24 23 28 28 O 1.44427 * 104.80417 * 23.97779 * 27 26 24 29 29 C 1.44427 * 105.27697 * 319.48892 * 28 27 26 30 30 H 0.96999 * 120.00533 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.77038 * 90.36949 * 10 9 7 32 32 H 1.08999 * 113.87353 * 318.97062 * 10 9 7 33 33 H 1.09005 * 113.73755 * 90.74122 * 11 10 9 34 34 H 1.08995 * 113.74174 * 221.93782 * 11 10 9 35 35 H 1.08993 * 109.46694 * 41.40810 * 14 12 9 36 36 H 1.08998 * 109.46661 * 161.40527 * 14 12 9 37 37 H 0.96998 * 119.99343 * 0.02562 * 15 14 12 38 38 H 1.08010 * 126.29080 * 0.02562 * 19 18 16 39 39 H 1.08995 * 110.50980 * 237.28913 * 26 24 23 40 40 H 1.09003 * 110.50943 * 359.86475 * 26 24 23 41 41 H 1.08993 * 110.37201 * 142.81564 * 27 26 24 42 42 H 1.09005 * 110.36730 * 265.03624 * 27 26 24 43 43 H 1.08996 * 110.37461 * 281.68391 * 29 28 27 44 44 H 1.08993 * 110.37322 * 159.34202 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2039 0.0820 9 7 1.3296 -2.3857 -0.1059 10 6 -0.0977 -2.7609 -0.1124 11 6 0.3710 -4.1419 0.3811 12 6 1.7294 -3.8017 -0.2581 13 1 1.8196 -4.1236 -1.2956 14 6 2.9319 -4.2012 0.5995 15 7 4.1642 -3.7303 -0.0377 16 6 5.3567 -3.9700 0.5424 17 8 5.4100 -4.5767 1.5949 18 6 6.5969 -3.4957 -0.0985 19 6 6.6910 -2.8028 -1.2886 20 7 7.9927 -2.5607 -1.5110 21 1 8.3588 -2.0876 -2.2745 22 7 8.7326 -3.1117 -0.4588 23 6 7.9121 -3.6705 0.3874 24 6 8.2991 -4.3790 1.6599 25 1 7.4103 -4.7099 2.1972 26 6 9.2236 -5.5781 1.3523 27 6 10.5360 -5.2402 2.0939 28 8 10.1416 -4.3357 3.1485 29 6 9.1623 -3.4583 2.5510 30 1 -0.4851 0.8400 0.0004 31 1 -0.5430 -2.7778 -1.1071 32 1 -0.7004 -2.2160 0.6143 33 1 0.4069 -4.2309 1.4669 34 1 -0.1424 -4.9761 -0.0969 35 1 2.8388 -3.7509 1.5877 36 1 2.9646 -5.2864 0.6962 37 1 4.1216 -3.2460 -0.8770 38 1 5.8683 -2.5072 -1.9230 39 1 8.7930 -6.5015 1.7396 40 1 9.3988 -5.6600 0.2796 41 1 10.9778 -6.1436 2.5142 42 1 11.2393 -4.7539 1.4178 43 1 9.6541 -2.6970 1.9456 44 1 8.5488 -2.9930 3.3224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038564131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:58 Heat of formation + Delta-G solvation = 44.842780 kcal Electronic energy + Delta-G solvation = -27105.766354 eV Core-core repulsion = 23254.513429 eV Total energy + Delta-G solvation = -3851.252924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63262 -39.20866 -38.99673 -37.78847 -34.20973 -33.47536 -32.23895 -30.80838 -30.57525 -28.95681 -28.00215 -27.43212 -23.58309 -23.39023 -23.26977 -22.43548 -21.78651 -20.03654 -19.50343 -19.20238 -18.45491 -16.80528 -16.42998 -16.11430 -15.99147 -15.48524 -15.40811 -15.22392 -14.95038 -14.27868 -14.10057 -13.84069 -13.76935 -13.67628 -13.15786 -12.91751 -12.88134 -11.91631 -11.89059 -11.69590 -11.49419 -11.47564 -11.12001 -11.06218 -11.04547 -10.87817 -10.78956 -10.55799 -10.05639 -9.90790 -9.78523 -9.64630 -9.61816 -9.31597 -8.96695 -8.83994 -8.51407 -6.92035 -5.82107 -3.13437 1.42705 2.02948 2.51626 3.32387 3.38426 3.41229 3.56045 3.66922 3.85669 4.34831 4.39217 4.46247 4.65132 4.77971 4.95098 4.99224 5.06728 5.23560 5.28352 5.33761 5.40028 5.48013 5.59372 5.59850 5.67524 5.72896 5.74760 5.87514 5.89336 6.08167 6.09721 6.27338 6.33696 6.39413 6.59798 6.67898 6.70999 6.87605 6.94457 7.22307 7.36125 7.37005 7.56150 7.92121 7.93813 8.59766 8.99916 9.66578 10.56309 11.35249 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.003444 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.728722 B = 8127.958698 C = 8975.797332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.162 3.838 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.589 3.411 17 O -0.551 6.551 18 C -0.278 4.278 19 C 0.108 3.892 20 N -0.461 5.461 21 H 0.444 0.556 22 N -0.297 5.297 23 C 0.141 3.859 24 C -0.055 4.055 25 H 0.133 0.867 26 C -0.141 4.141 27 C 0.047 3.953 28 O -0.374 6.374 29 C 0.057 3.943 30 H 0.253 0.747 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.399 0.601 38 H 0.189 0.811 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.676 -9.748 -3.664 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.036 3.964 11 C -0.195 4.195 12 C 0.017 3.983 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.360 5.360 16 C 0.376 3.624 17 O -0.430 6.430 18 C -0.293 4.293 19 C -0.045 4.045 20 N -0.165 5.165 21 H 0.289 0.711 22 N -0.119 5.119 23 C -0.027 4.027 24 C -0.075 4.075 25 H 0.150 0.850 26 C -0.180 4.180 27 C -0.030 4.030 28 O -0.293 6.293 29 C -0.021 4.021 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.233 0.767 38 H 0.206 0.794 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.997 -9.556 -2.923 18.862 hybrid contribution -0.452 1.547 -1.324 2.086 sum 15.545 -8.008 -4.247 17.995 Atomic orbital electron populations 1.69825 1.05006 1.25295 1.56235 1.24788 0.95586 0.97364 1.02512 0.86235 0.78895 0.84105 0.77393 1.21758 1.21668 1.20644 1.18946 0.90683 0.81961 1.43180 0.90301 1.46130 1.02215 0.99925 1.84654 1.22132 0.87854 0.88582 0.97791 1.23778 0.96248 0.98913 1.00574 1.22569 0.92314 0.87461 0.95945 0.93317 1.21742 0.82386 0.97982 0.97813 1.45789 1.05775 1.57949 1.26524 1.17195 0.82238 0.78919 0.84028 1.90671 1.86873 1.42728 1.22742 1.20376 0.94875 1.14571 0.99441 1.23261 0.88300 0.95843 0.97079 1.46062 1.04599 1.44942 1.20945 0.71128 1.77058 1.18947 1.17572 0.98369 1.22043 0.89799 0.95403 0.95442 1.21368 1.01652 0.94125 0.90388 0.84952 1.22965 0.95128 0.98301 1.01565 1.23406 0.96164 0.93780 0.89682 1.89116 1.59214 1.47117 1.33829 1.23494 0.89472 0.92539 0.96589 0.93662 0.95456 0.91275 0.90480 0.92823 0.90902 0.92054 0.76728 0.79427 0.90017 0.90446 0.89150 0.92237 0.91789 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 11.51 55.49 0.64 -25.69 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 21.40 29.56 -169.99 -5.02 16.37 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.70 10.52 -15.06 -0.16 -5.85 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.10 3.58 -170.47 -0.61 -14.72 16 10 C 0.16 3.59 7.42 -2.96 -0.02 3.57 16 11 C -0.16 -2.74 7.85 -25.80 -0.20 -2.94 16 12 C 0.12 2.27 4.35 -66.67 -0.29 1.98 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 14 C 0.13 2.15 5.55 -4.04 -0.02 2.13 16 15 N -0.71 -11.30 5.54 -61.38 -0.34 -11.64 16 16 C 0.59 9.72 7.81 -12.52 -0.10 9.63 16 17 O -0.55 -10.50 14.59 5.28 0.08 -10.43 16 18 C -0.28 -3.89 6.13 -105.06 -0.64 -4.54 16 19 C 0.11 1.14 11.52 -16.56 -0.19 0.95 16 20 N -0.46 -4.46 7.29 30.85 0.22 -4.23 16 21 H 0.44 2.64 8.96 -182.73 -1.64 1.00 16 22 N -0.30 -3.72 12.34 33.89 0.42 -3.30 16 23 C 0.14 1.93 5.62 -82.02 -0.46 1.47 16 24 C -0.05 -0.72 3.48 -90.20 -0.31 -1.04 16 25 H 0.13 2.00 5.70 -51.93 -0.30 1.71 16 26 C -0.14 -1.54 6.73 -25.16 -0.17 -1.71 16 27 C 0.05 0.48 7.63 37.94 0.29 0.77 16 28 O -0.37 -4.91 11.65 -35.23 -0.41 -5.33 16 29 C 0.06 0.72 7.17 37.94 0.27 0.99 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.72 7.36 -51.93 -0.38 1.34 16 33 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 5.76 7.40 -40.82 -0.30 5.46 16 38 H 0.19 1.43 7.46 -52.48 -0.39 1.04 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.81 7.63 -51.93 -0.40 0.42 16 44 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -33.41 364.40 -9.22 -42.63 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.58 Total: 5.67 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.11 Total: 5.17 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.33 Total: -59.58 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.33 Total: -15.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.41 -9.22 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.473 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds