Wall clock time and date at job start Tue Mar 31 2020 12:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48502 * 109.47090 * 274.98893 * 3 2 1 5 5 H 1.48500 * 109.46969 * 34.99285 * 3 2 1 6 6 H 1.48507 * 109.47162 * 154.99371 * 3 2 1 7 7 C 1.38818 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99644 * 185.06085 * 7 2 1 9 9 N 1.36938 * 119.99798 * 5.07027 * 7 2 1 10 10 C 1.47582 * 134.48771 * 353.48219 * 9 7 2 11 11 C 1.53956 * 86.11192 * 204.66210 * 10 9 7 12 12 C 1.47920 * 134.50379 * 173.52147 * 9 7 2 13 13 H 1.09003 * 113.76640 * 269.57796 * 12 9 7 14 14 C 1.53005 * 113.86804 * 41.06656 * 12 9 7 15 15 N 1.46503 * 109.47343 * 281.40292 * 14 12 9 16 16 C 1.34765 * 119.99717 * 180.02562 * 15 14 12 17 17 O 1.21602 * 120.00393 * 359.97438 * 16 15 14 18 18 C 1.47436 * 119.99932 * 180.02562 * 16 15 14 19 19 C 1.38038 * 126.41400 * 359.68919 * 18 16 15 20 20 N 1.34261 * 107.42018 * 179.87059 * 19 18 16 21 21 H 0.96992 * 125.75427 * 180.11132 * 20 19 18 22 22 N 1.39936 * 108.48585 * 0.39256 * 20 19 18 23 23 C 1.30443 * 108.90051 * 359.74981 * 22 20 19 24 24 C 1.50699 * 125.98889 * 179.97438 * 23 22 20 25 25 H 1.09000 * 110.45616 * 177.39691 * 24 23 22 26 26 C 1.54509 * 110.51472 * 300.00397 * 24 23 22 27 27 C 1.54484 * 104.06198 * 118.64456 * 26 24 23 28 28 O 1.44427 * 104.80417 * 23.97779 * 27 26 24 29 29 C 1.44427 * 105.27697 * 319.48892 * 28 27 26 30 30 H 0.96999 * 120.00533 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.77038 * 90.36949 * 10 9 7 32 32 H 1.08999 * 113.87353 * 318.97062 * 10 9 7 33 33 H 1.09005 * 113.73755 * 90.74122 * 11 10 9 34 34 H 1.08995 * 113.74174 * 221.93782 * 11 10 9 35 35 H 1.08993 * 109.46694 * 41.40810 * 14 12 9 36 36 H 1.08998 * 109.46661 * 161.40527 * 14 12 9 37 37 H 0.96998 * 119.99343 * 0.02562 * 15 14 12 38 38 H 1.08010 * 126.29080 * 0.02562 * 19 18 16 39 39 H 1.08995 * 110.50980 * 237.28913 * 26 24 23 40 40 H 1.09003 * 110.50943 * 359.86475 * 26 24 23 41 41 H 1.08993 * 110.37201 * 142.81564 * 27 26 24 42 42 H 1.09005 * 110.36730 * 265.03624 * 27 26 24 43 43 H 1.08996 * 110.37461 * 281.68391 * 29 28 27 44 44 H 1.08993 * 110.37322 * 159.34202 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2039 0.0820 9 7 1.3296 -2.3857 -0.1059 10 6 -0.0977 -2.7609 -0.1124 11 6 0.3710 -4.1419 0.3811 12 6 1.7294 -3.8017 -0.2581 13 1 1.8196 -4.1236 -1.2956 14 6 2.9319 -4.2012 0.5995 15 7 4.1642 -3.7303 -0.0377 16 6 5.3567 -3.9700 0.5424 17 8 5.4100 -4.5767 1.5949 18 6 6.5969 -3.4957 -0.0985 19 6 6.6910 -2.8028 -1.2886 20 7 7.9927 -2.5607 -1.5110 21 1 8.3588 -2.0876 -2.2745 22 7 8.7326 -3.1117 -0.4588 23 6 7.9121 -3.6705 0.3874 24 6 8.2991 -4.3790 1.6599 25 1 7.4103 -4.7099 2.1972 26 6 9.2236 -5.5781 1.3523 27 6 10.5360 -5.2402 2.0939 28 8 10.1416 -4.3357 3.1485 29 6 9.1623 -3.4583 2.5510 30 1 -0.4851 0.8400 0.0004 31 1 -0.5430 -2.7778 -1.1071 32 1 -0.7004 -2.2160 0.6143 33 1 0.4069 -4.2309 1.4669 34 1 -0.1424 -4.9761 -0.0969 35 1 2.8388 -3.7509 1.5877 36 1 2.9646 -5.2864 0.6962 37 1 4.1216 -3.2460 -0.8770 38 1 5.8683 -2.5072 -1.9230 39 1 8.7930 -6.5015 1.7396 40 1 9.3988 -5.6600 0.2796 41 1 10.9778 -6.1436 2.5142 42 1 11.2393 -4.7539 1.4178 43 1 9.6541 -2.6970 1.9456 44 1 8.5488 -2.9930 3.3224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038564131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:57 Heat of formation + Delta-G solvation = 20.066566 kcal Electronic energy + Delta-G solvation = -27106.840731 eV Core-core repulsion = 23254.513429 eV Total energy + Delta-G solvation = -3852.327301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58173 -40.37312 -40.12521 -39.32737 -35.52475 -34.49674 -34.16555 -31.82834 -31.52715 -29.89422 -29.82311 -28.84920 -25.23837 -24.57086 -24.48800 -23.40372 -23.03290 -21.28106 -20.76834 -20.43410 -19.56960 -18.45348 -17.40166 -17.30088 -17.06330 -16.90402 -16.76823 -16.33733 -16.11535 -15.78869 -15.39192 -15.35999 -14.84762 -14.76272 -14.58805 -14.33694 -13.78282 -13.53124 -13.25615 -12.91247 -12.84502 -12.65276 -12.62875 -12.54546 -12.35260 -12.26851 -12.00019 -11.90464 -11.77000 -11.47803 -11.27832 -10.86019 -10.79777 -10.65210 -10.54894 -10.10589 -9.71602 -8.82899 -7.84625 -5.14592 0.51084 0.98737 1.44570 1.47124 1.54327 1.72477 2.32012 2.47655 2.51134 2.94787 3.34677 3.40836 3.46171 3.54435 3.73327 3.94638 4.00715 4.06435 4.12702 4.19419 4.30979 4.35464 4.38912 4.41760 4.55662 4.70905 4.72513 4.78386 4.80778 4.85445 4.93709 5.00780 5.10812 5.11828 5.17031 5.30220 5.39405 5.55877 5.66045 5.76932 5.79509 6.01027 6.20439 6.43540 6.71527 6.99114 7.36229 7.69470 8.65293 9.33284 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.003444 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.728722 B = 8127.958698 C = 8975.797332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.208 4.208 8 H 0.088 0.912 9 N -0.629 5.629 10 C 0.153 3.847 11 C -0.133 4.133 12 C 0.134 3.866 13 H 0.075 0.925 14 C 0.135 3.865 15 N -0.708 5.708 16 C 0.588 3.412 17 O -0.585 6.585 18 C -0.314 4.314 19 C 0.134 3.866 20 N -0.442 5.442 21 H 0.462 0.538 22 N -0.308 5.308 23 C 0.132 3.868 24 C -0.058 4.058 25 H 0.108 0.892 26 C -0.135 4.135 27 C 0.045 3.955 28 O -0.392 6.392 29 C 0.060 3.940 30 H 0.244 0.756 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.407 0.593 38 H 0.222 0.778 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.429 -10.682 -5.375 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.337 4.337 8 H 0.105 0.895 9 N -0.356 5.356 10 C 0.027 3.973 11 C -0.172 4.172 12 C 0.028 3.972 13 H 0.092 0.908 14 C 0.010 3.990 15 N -0.357 5.357 16 C 0.377 3.623 17 O -0.467 6.467 18 C -0.329 4.329 19 C -0.021 4.021 20 N -0.148 5.148 21 H 0.311 0.689 22 N -0.131 5.131 23 C -0.035 4.035 24 C -0.078 4.078 25 H 0.126 0.874 26 C -0.173 4.173 27 C -0.031 4.031 28 O -0.311 6.311 29 C -0.018 4.018 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.242 0.758 38 H 0.239 0.761 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.807 -10.509 -4.677 21.199 hybrid contribution -0.963 1.772 -0.822 2.178 sum 16.844 -8.738 -5.499 19.756 Atomic orbital electron populations 1.70006 1.06360 1.25092 1.58952 1.25508 0.96307 1.00412 1.04079 0.85279 0.77823 0.80406 0.77210 1.21183 1.23192 1.19670 1.19310 0.91198 0.82973 1.40229 0.89477 1.46472 1.03103 1.01285 1.84712 1.22094 0.87177 0.91195 0.96808 1.23582 0.95436 0.97340 1.00799 1.22726 0.93004 0.84160 0.97275 0.90762 1.21510 0.82695 0.98803 0.96006 1.45699 1.05258 1.58048 1.26725 1.17533 0.82948 0.78247 0.83594 1.90656 1.87393 1.44323 1.24291 1.20289 0.93881 1.17308 1.01386 1.23658 0.89230 0.93391 0.95795 1.46111 1.04272 1.43774 1.20687 0.68902 1.77020 1.19228 1.17886 0.98922 1.22081 0.89978 0.95735 0.95737 1.21272 1.01051 0.95101 0.90403 0.87395 1.22935 0.94951 0.97560 1.01876 1.23583 0.95945 0.94221 0.89335 1.89092 1.59279 1.47650 1.35092 1.23431 0.89418 0.92545 0.96374 0.94695 0.95925 0.94960 0.90490 0.88865 0.94117 0.90150 0.75752 0.76113 0.89592 0.90063 0.86994 0.91407 0.91745 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.20 11.51 21.65 0.25 -55.95 16 2 C -0.07 -3.85 5.50 84.87 0.47 -3.38 16 3 Si 0.96 44.28 29.56 68.60 2.03 46.30 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.21 -10.67 10.52 84.03 0.88 -9.78 16 8 H 0.09 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.63 -28.96 3.58 -693.25 -2.48 -31.44 16 10 C 0.15 6.77 7.42 86.49 0.64 7.41 16 11 C -0.13 -4.37 7.85 31.25 0.25 -4.13 16 12 C 0.13 4.57 4.35 45.03 0.20 4.76 16 13 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.13 4.41 5.55 86.38 0.48 4.89 16 15 N -0.71 -21.18 5.54 -466.37 -2.58 -23.77 16 16 C 0.59 18.86 7.81 86.67 0.68 19.54 16 17 O -0.58 -22.46 14.59 -4.04 -0.06 -22.52 16 18 C -0.31 -8.29 6.13 -20.15 -0.12 -8.41 16 19 C 0.13 2.40 11.52 84.27 0.97 3.38 16 20 N -0.44 -7.14 7.29 -56.31 -0.41 -7.55 16 21 H 0.46 3.77 8.96 -213.44 -1.91 1.86 16 22 N -0.31 -7.08 12.34 -46.68 -0.58 -7.66 16 23 C 0.13 3.48 5.62 43.52 0.24 3.72 16 24 C -0.06 -1.51 3.48 -10.52 -0.04 -1.55 16 25 H 0.11 3.38 5.70 -2.39 -0.01 3.37 16 26 C -0.13 -2.81 6.73 31.61 0.21 -2.60 16 27 C 0.05 0.87 7.63 72.49 0.55 1.42 16 28 O -0.39 -10.07 11.65 -148.98 -1.74 -11.81 16 29 C 0.06 1.52 7.17 72.49 0.52 2.04 16 30 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.03 1.65 7.36 -2.39 -0.02 1.63 16 33 H 0.08 2.55 8.10 -2.38 -0.02 2.53 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.41 10.63 7.40 -92.71 -0.69 9.94 16 38 H 0.22 2.37 7.46 -2.91 -0.02 2.35 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.62 7.73 -2.39 -0.02 1.60 16 41 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.06 1.61 7.63 -2.39 -0.02 1.59 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -74.12 364.40 -1.20 -75.32 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -1.56 Total: 21.74 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.93 Total: 17.33 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -5.80 Total: -126.36 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.79 Total: -34.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.12 -1.20 -75.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038564131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.387 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds