Wall clock time and date at job start Tue Mar 31 2020 12:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00136 * 2 1 4 4 H 1.48498 * 109.46744 * 240.00203 * 3 2 1 5 5 H 1.48495 * 109.46740 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46911 * 120.00002 * 3 2 1 7 7 C 1.38814 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00378 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99525 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.06324 * 0.04463 * 9 7 2 11 11 C 1.53607 * 88.00597 * 152.89549 * 10 9 7 12 12 C 1.47072 * 136.05452 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.46861 * 92.31421 * 12 9 7 14 14 C 1.53000 * 113.46743 * 321.93403 * 12 9 7 15 15 N 1.46505 * 109.47384 * 75.41015 * 14 12 9 16 16 C 1.34772 * 119.99908 * 180.02562 * 15 14 12 17 17 O 1.21602 * 120.00393 * 0.02562 * 16 15 14 18 18 C 1.47436 * 119.99508 * 180.02562 * 16 15 14 19 19 C 1.38042 * 126.41731 * 0.19511 * 18 16 15 20 20 N 1.34262 * 107.41455 * 180.25618 * 19 18 16 21 21 H 0.97000 * 125.75231 * 179.72984 * 20 19 18 22 22 N 1.39928 * 108.49450 * 359.73273 * 20 19 18 23 23 C 1.30456 * 108.89566 * 359.97438 * 22 20 19 24 24 C 1.50695 * 125.98641 * 180.02562 * 23 22 20 25 25 H 1.09000 * 110.27331 * 194.38598 * 24 23 22 26 26 C 1.54947 * 110.39771 * 72.23769 * 24 23 22 27 27 C 1.55457 * 100.98961 * 204.64744 * 26 24 23 28 28 C 1.54382 * 102.18540 * 34.03935 * 27 26 24 29 29 O 1.43233 * 107.66464 * 338.74226 * 28 27 26 30 30 H 0.97002 * 120.00060 * 359.97438 * 1 2 3 31 31 H 1.08992 * 113.46512 * 267.62760 * 10 9 7 32 32 H 1.08999 * 113.46244 * 38.06195 * 10 9 7 33 33 H 1.08997 * 114.20687 * 272.45275 * 11 10 9 34 34 H 1.09005 * 114.23739 * 139.59440 * 11 10 9 35 35 H 1.08999 * 109.47045 * 315.41221 * 14 12 9 36 36 H 1.09001 * 109.47035 * 195.41065 * 14 12 9 37 37 H 0.97000 * 119.99779 * 0.02562 * 15 14 12 38 38 H 1.08003 * 126.29225 * 359.96934 * 19 18 16 39 39 H 1.08999 * 111.12360 * 322.51243 * 26 24 23 40 40 H 1.09001 * 111.12353 * 86.63548 * 26 24 23 41 41 H 1.08994 * 110.83103 * 275.89000 * 27 26 24 42 42 H 1.08999 * 110.92148 * 152.22878 * 27 26 24 43 43 H 1.09002 * 109.83024 * 219.18066 * 28 27 26 44 44 H 1.08996 * 109.83002 * 98.29659 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0878 -2.7949 -0.0007 11 6 0.3424 -4.0937 -0.6989 12 6 1.6799 -3.8154 0.0005 13 1 1.7453 -4.2465 0.9996 14 6 2.8990 -4.1405 -0.8648 15 7 4.1171 -3.7097 -0.1741 16 6 5.3207 -3.8955 -0.7513 17 8 5.3956 -4.4203 -1.8457 18 6 6.5464 -3.4624 -0.0559 19 6 6.6157 -2.8599 1.1841 20 7 7.9116 -2.6242 1.4446 21 1 8.2614 -2.2047 2.2461 22 7 8.6724 -3.0859 0.3647 23 6 7.8705 -3.5904 -0.5321 24 6 8.2836 -4.1970 -1.8482 25 1 7.4184 -4.3052 -2.5023 26 6 8.9606 -5.5720 -1.6203 27 6 9.8368 -5.6865 -2.8993 28 6 10.2383 -4.2174 -3.1519 29 8 9.2868 -3.3849 -2.4786 30 1 -0.4850 0.8401 0.0004 31 1 -0.4944 -2.9541 0.9979 32 1 -0.7219 -2.1588 -0.6182 33 1 0.3838 -4.0243 -1.7859 34 1 -0.1721 -4.9856 -0.3411 35 1 2.8178 -3.6181 -1.8179 36 1 2.9426 -5.2152 -1.0420 37 1 4.0573 -3.2907 0.6987 38 1 5.7806 -2.6179 1.8249 39 1 9.5782 -5.5617 -0.7222 40 1 8.2211 -6.3716 -1.5765 41 1 9.2554 -6.0788 -3.7336 42 1 10.7166 -6.3029 -2.7144 43 1 10.2212 -4.0081 -4.2215 44 1 11.2366 -4.0334 -2.7551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038626233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:15 Heat of formation + Delta-G solvation = 49.916816 kcal Electronic energy + Delta-G solvation = -27149.055674 eV Core-core repulsion = 23298.022777 eV Total energy + Delta-G solvation = -3851.032897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51747 -39.20034 -39.02445 -37.92831 -34.06891 -32.61383 -32.24521 -32.04806 -30.60400 -28.79571 -28.03707 -27.34848 -23.60127 -23.49033 -23.19880 -21.78356 -21.72773 -20.08439 -19.78534 -19.25913 -18.42013 -16.79812 -16.59007 -16.10745 -16.05172 -15.41096 -15.39409 -15.08236 -14.83088 -14.25377 -14.01665 -13.75495 -13.64936 -13.54043 -13.22360 -12.94582 -12.82277 -11.88683 -11.86776 -11.71454 -11.53728 -11.48401 -11.12418 -11.03200 -11.00000 -10.96475 -10.78042 -10.60238 -10.04112 -9.87480 -9.85934 -9.68760 -9.35668 -9.17124 -8.90961 -8.83322 -8.46464 -6.92388 -5.79355 -3.11937 1.49548 2.05140 2.59436 3.35176 3.42001 3.42486 3.53951 3.70603 3.91067 4.26011 4.41213 4.47815 4.61378 4.76983 4.85093 5.10512 5.16202 5.22427 5.32481 5.37051 5.41746 5.50195 5.56534 5.58909 5.62349 5.76249 5.77186 5.85450 5.91199 6.07547 6.12031 6.27687 6.34845 6.40536 6.58744 6.72657 6.90749 6.94008 7.01970 7.20774 7.37967 7.45834 7.55784 7.95070 7.96313 8.63005 9.00363 9.67894 10.60756 11.37775 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.003524 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.454894 B = 7942.542560 C = 8826.780680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.710 5.710 16 C 0.590 3.410 17 O -0.552 6.552 18 C -0.274 4.274 19 C 0.107 3.893 20 N -0.462 5.462 21 H 0.444 0.556 22 N -0.278 5.278 23 C 0.130 3.870 24 C 0.153 3.847 25 H 0.122 0.878 26 C -0.142 4.142 27 C -0.154 4.154 28 C 0.052 3.948 29 O -0.372 6.372 30 H 0.254 0.746 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.399 0.601 38 H 0.190 0.810 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.924 -11.782 1.625 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.377 3.623 17 O -0.432 6.432 18 C -0.289 4.289 19 C -0.046 4.046 20 N -0.167 5.167 21 H 0.289 0.711 22 N -0.100 5.100 23 C -0.039 4.039 24 C 0.094 3.906 25 H 0.139 0.861 26 C -0.180 4.180 27 C -0.192 4.192 28 C -0.025 4.025 29 O -0.291 6.291 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.207 0.793 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.195 -11.287 1.135 19.773 hybrid contribution -0.287 1.212 1.011 1.604 sum 15.908 -10.075 2.146 18.952 Atomic orbital electron populations 1.69811 1.04970 1.25407 1.56303 1.24760 0.95606 0.97376 1.02526 0.86285 0.78556 0.83506 0.77926 1.21027 1.21539 1.21331 1.18791 0.89964 0.81342 1.44086 0.90240 1.45650 1.02593 0.98564 1.85909 1.22045 0.88718 0.90196 0.96465 1.23677 0.96930 0.99009 1.00434 1.22410 0.92103 0.87708 0.95820 0.93522 1.21808 0.82818 0.98449 0.97068 1.45779 1.05687 1.61846 1.22623 1.17186 0.82191 0.78228 0.84719 1.90671 1.86813 1.45279 1.20462 1.20301 0.94418 1.16406 0.97773 1.23244 0.88590 0.95890 0.96853 1.46151 1.04617 1.47777 1.18121 0.71144 1.77167 1.18329 1.18558 0.95977 1.22156 0.90021 0.96431 0.95253 1.21617 0.93022 0.87918 0.88079 0.86091 1.23270 0.99195 0.97040 0.98504 1.23146 1.00487 0.97212 0.98317 1.23096 0.92857 0.89386 0.97143 1.88483 1.38945 1.31769 1.69922 0.93618 0.95788 0.91007 0.90164 0.92349 0.90961 0.92175 0.76689 0.79345 0.90341 0.89272 0.90100 0.89966 0.91307 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 11.51 55.49 0.64 -25.94 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.21 -5.61 10.55 -15.06 -0.16 -5.76 16 8 H 0.08 1.98 7.68 -52.49 -0.40 1.58 16 9 N -0.60 -14.20 3.65 -176.81 -0.65 -14.85 16 10 C 0.15 3.38 7.40 -8.45 -0.06 3.31 16 11 C -0.16 -2.85 8.03 -26.17 -0.21 -3.06 16 12 C 0.13 2.35 4.10 -72.40 -0.30 2.05 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.15 5.52 -4.04 -0.02 2.13 16 15 N -0.71 -11.65 5.40 -61.38 -0.33 -11.98 16 16 C 0.59 10.12 7.81 -12.52 -0.10 10.02 16 17 O -0.55 -10.80 14.66 5.28 0.08 -10.72 16 18 C -0.27 -4.13 6.13 -105.07 -0.64 -4.77 16 19 C 0.11 1.23 11.52 -16.56 -0.19 1.04 16 20 N -0.46 -5.03 7.29 30.85 0.22 -4.81 16 21 H 0.44 3.09 8.96 -182.73 -1.64 1.46 16 22 N -0.28 -4.00 12.63 33.89 0.43 -3.58 16 23 C 0.13 2.00 6.21 -82.02 -0.51 1.49 16 24 C 0.15 2.23 3.73 -26.86 -0.10 2.13 16 25 H 0.12 1.98 5.90 -51.93 -0.31 1.67 16 26 C -0.14 -1.59 6.56 -24.40 -0.16 -1.75 16 27 C -0.15 -1.39 7.03 -24.70 -0.17 -1.57 16 28 C 0.05 0.56 7.79 37.88 0.30 0.85 16 29 O -0.37 -5.64 11.02 -35.23 -0.39 -6.03 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 33 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 5.99 7.40 -40.82 -0.30 5.69 16 38 H 0.19 1.57 7.46 -52.48 -0.39 1.18 16 39 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -34.37 365.35 -9.55 -43.92 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.61 Total: 5.85 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.43 Total: 5.88 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.31 Total: -61.14 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.31 Total: -16.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.37 -9.55 -43.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038626233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.841 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds