Wall clock time and date at job start Tue Mar 31 2020 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00136 * 2 1 4 4 H 1.48498 * 109.46744 * 240.00203 * 3 2 1 5 5 H 1.48495 * 109.46740 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46911 * 120.00002 * 3 2 1 7 7 C 1.38814 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00378 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99525 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.06324 * 0.04463 * 9 7 2 11 11 C 1.53607 * 88.00597 * 152.89549 * 10 9 7 12 12 C 1.47072 * 136.05452 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.46861 * 92.31421 * 12 9 7 14 14 C 1.53000 * 113.46743 * 321.93403 * 12 9 7 15 15 N 1.46505 * 109.47384 * 75.41015 * 14 12 9 16 16 C 1.34772 * 119.99908 * 180.02562 * 15 14 12 17 17 O 1.21602 * 120.00393 * 0.02562 * 16 15 14 18 18 C 1.47436 * 119.99508 * 180.02562 * 16 15 14 19 19 C 1.38042 * 126.41731 * 0.19511 * 18 16 15 20 20 N 1.34262 * 107.41455 * 180.25618 * 19 18 16 21 21 H 0.97000 * 125.75231 * 179.72984 * 20 19 18 22 22 N 1.39928 * 108.49450 * 359.73273 * 20 19 18 23 23 C 1.30456 * 108.89566 * 359.97438 * 22 20 19 24 24 C 1.50695 * 125.98641 * 180.02562 * 23 22 20 25 25 H 1.09000 * 110.27331 * 194.38598 * 24 23 22 26 26 C 1.54947 * 110.39771 * 72.23769 * 24 23 22 27 27 C 1.55457 * 100.98961 * 204.64744 * 26 24 23 28 28 C 1.54382 * 102.18540 * 34.03935 * 27 26 24 29 29 O 1.43233 * 107.66464 * 338.74226 * 28 27 26 30 30 H 0.97002 * 120.00060 * 359.97438 * 1 2 3 31 31 H 1.08992 * 113.46512 * 267.62760 * 10 9 7 32 32 H 1.08999 * 113.46244 * 38.06195 * 10 9 7 33 33 H 1.08997 * 114.20687 * 272.45275 * 11 10 9 34 34 H 1.09005 * 114.23739 * 139.59440 * 11 10 9 35 35 H 1.08999 * 109.47045 * 315.41221 * 14 12 9 36 36 H 1.09001 * 109.47035 * 195.41065 * 14 12 9 37 37 H 0.97000 * 119.99779 * 0.02562 * 15 14 12 38 38 H 1.08003 * 126.29225 * 359.96934 * 19 18 16 39 39 H 1.08999 * 111.12360 * 322.51243 * 26 24 23 40 40 H 1.09001 * 111.12353 * 86.63548 * 26 24 23 41 41 H 1.08994 * 110.83103 * 275.89000 * 27 26 24 42 42 H 1.08999 * 110.92148 * 152.22878 * 27 26 24 43 43 H 1.09002 * 109.83024 * 219.18066 * 28 27 26 44 44 H 1.08996 * 109.83002 * 98.29659 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0878 -2.7949 -0.0007 11 6 0.3424 -4.0937 -0.6989 12 6 1.6799 -3.8154 0.0005 13 1 1.7453 -4.2465 0.9996 14 6 2.8990 -4.1405 -0.8648 15 7 4.1171 -3.7097 -0.1741 16 6 5.3207 -3.8955 -0.7513 17 8 5.3956 -4.4203 -1.8457 18 6 6.5464 -3.4624 -0.0559 19 6 6.6157 -2.8599 1.1841 20 7 7.9116 -2.6242 1.4446 21 1 8.2614 -2.2047 2.2461 22 7 8.6724 -3.0859 0.3647 23 6 7.8705 -3.5904 -0.5321 24 6 8.2836 -4.1970 -1.8482 25 1 7.4184 -4.3052 -2.5023 26 6 8.9606 -5.5720 -1.6203 27 6 9.8368 -5.6865 -2.8993 28 6 10.2383 -4.2174 -3.1519 29 8 9.2868 -3.3849 -2.4786 30 1 -0.4850 0.8401 0.0004 31 1 -0.4944 -2.9541 0.9979 32 1 -0.7219 -2.1588 -0.6182 33 1 0.3838 -4.0243 -1.7859 34 1 -0.1721 -4.9856 -0.3411 35 1 2.8178 -3.6181 -1.8179 36 1 2.9426 -5.2152 -1.0420 37 1 4.0573 -3.2907 0.6987 38 1 5.7806 -2.6179 1.8249 39 1 9.5782 -5.5617 -0.7222 40 1 8.2211 -6.3716 -1.5765 41 1 9.2554 -6.0788 -3.7336 42 1 10.7166 -6.3029 -2.7144 43 1 10.2212 -4.0081 -4.2215 44 1 11.2366 -4.0334 -2.7551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038626233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:14 Heat of formation + Delta-G solvation = 24.199622 kcal Electronic energy + Delta-G solvation = -27150.170855 eV Core-core repulsion = 23298.022777 eV Total energy + Delta-G solvation = -3852.148079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55205 -40.46062 -40.14948 -39.45986 -35.46967 -34.20685 -33.63262 -32.93622 -31.74557 -29.90752 -29.73826 -28.77116 -25.34860 -24.55690 -24.47518 -23.15185 -22.56889 -21.34316 -20.99574 -20.72135 -19.58465 -18.48294 -17.53350 -17.36263 -17.05192 -16.99495 -16.75879 -16.35388 -15.95934 -15.77574 -15.39101 -15.33829 -14.78180 -14.56106 -14.53949 -14.30969 -13.87768 -13.55071 -13.26786 -12.91511 -12.72296 -12.67743 -12.67124 -12.54206 -12.33111 -12.30040 -12.04750 -11.86448 -11.78062 -11.59726 -11.19341 -10.86120 -10.81088 -10.73108 -10.35438 -10.11544 -9.72344 -8.84617 -7.84032 -5.14775 0.49681 0.92736 1.44065 1.48682 1.52685 1.71798 2.28214 2.45074 2.50673 2.93248 3.30946 3.39058 3.49887 3.57545 3.68082 3.96712 3.99842 4.00618 4.16094 4.21851 4.32561 4.36860 4.37428 4.42021 4.59000 4.72294 4.76772 4.79734 4.85933 4.93100 4.95452 4.99446 5.10803 5.14985 5.18147 5.26635 5.38400 5.54763 5.64307 5.80500 5.99497 6.01293 6.20628 6.43248 6.70411 6.97630 7.34296 7.68645 8.68568 9.33692 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.003524 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.454894 B = 7942.542560 C = 8826.780680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.963 3.037 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.203 4.203 8 H 0.089 0.911 9 N -0.629 5.629 10 C 0.142 3.858 11 C -0.137 4.137 12 C 0.136 3.864 13 H 0.074 0.926 14 C 0.132 3.868 15 N -0.706 5.706 16 C 0.589 3.411 17 O -0.584 6.584 18 C -0.309 4.309 19 C 0.134 3.866 20 N -0.443 5.443 21 H 0.462 0.538 22 N -0.298 5.298 23 C 0.116 3.884 24 C 0.146 3.854 25 H 0.096 0.904 26 C -0.135 4.135 27 C -0.144 4.144 28 C 0.041 3.959 29 O -0.402 6.402 30 H 0.244 0.756 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.407 0.593 38 H 0.226 0.774 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.563 -13.205 3.007 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.331 4.331 8 H 0.107 0.893 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.175 4.175 12 C 0.030 3.970 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.356 5.356 16 C 0.377 3.623 17 O -0.466 6.466 18 C -0.324 4.324 19 C -0.020 4.020 20 N -0.150 5.150 21 H 0.311 0.689 22 N -0.121 5.121 23 C -0.052 4.052 24 C 0.087 3.913 25 H 0.113 0.887 26 C -0.173 4.173 27 C -0.181 4.181 28 C -0.035 4.035 29 O -0.322 6.322 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.242 0.758 38 H 0.242 0.758 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.887 -12.735 2.557 22.105 hybrid contribution -0.762 1.610 0.593 1.878 sum 17.125 -11.124 3.150 20.662 Atomic orbital electron populations 1.69994 1.06276 1.25140 1.59019 1.25471 0.96312 1.00333 1.04142 0.85377 0.77227 0.80039 0.78080 1.21629 1.22660 1.19548 1.19171 0.90608 0.82393 1.40939 0.89315 1.45963 1.03580 1.00068 1.85866 1.22062 0.87846 0.92064 0.96362 1.23506 0.96025 0.98071 0.99926 1.22557 0.92799 0.84574 0.97103 0.90863 1.21597 0.83033 0.99232 0.95412 1.45686 1.05178 1.61884 1.22810 1.17473 0.82826 0.77587 0.84367 1.90653 1.87294 1.46781 1.21919 1.20250 0.93460 1.19166 0.99569 1.23687 0.89491 0.93190 0.95660 1.46183 1.04316 1.46523 1.17945 0.68897 1.77106 1.18983 1.19205 0.96790 1.22328 0.90425 0.96724 0.95727 1.21549 0.92477 0.89681 0.87615 0.88690 1.23222 0.99315 0.95181 0.99614 1.23153 1.01140 0.96482 0.97355 1.23361 0.92551 0.90099 0.97485 1.88438 1.39715 1.33567 1.70470 0.94693 0.95817 0.94856 0.90473 0.88180 0.94237 0.90079 0.75755 0.75763 0.90268 0.88958 0.89481 0.87300 0.90371 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 11.51 21.65 0.25 -56.40 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 3 Si 0.96 45.06 29.55 68.60 2.03 47.09 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.20 -10.48 10.55 84.03 0.89 -9.59 16 8 H 0.09 4.30 7.68 -2.91 -0.02 4.28 16 9 N -0.63 -29.18 3.65 -713.31 -2.61 -31.78 16 10 C 0.14 6.31 7.40 83.22 0.62 6.92 16 11 C -0.14 -4.51 8.03 30.96 0.25 -4.26 16 12 C 0.14 4.68 4.10 41.78 0.17 4.85 16 13 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 14 C 0.13 4.41 5.52 86.38 0.48 4.88 16 15 N -0.71 -21.93 5.40 -466.36 -2.52 -24.45 16 16 C 0.59 19.80 7.81 86.67 0.68 20.47 16 17 O -0.58 -23.11 14.66 -4.04 -0.06 -23.17 16 18 C -0.31 -8.96 6.13 -20.15 -0.12 -9.09 16 19 C 0.13 2.72 11.52 84.27 0.97 3.69 16 20 N -0.44 -8.49 7.29 -56.31 -0.41 -8.90 16 21 H 0.46 4.97 8.96 -213.43 -1.91 3.06 16 22 N -0.30 -8.20 12.63 -46.68 -0.59 -8.79 16 23 C 0.12 3.53 6.21 43.51 0.27 3.80 16 24 C 0.15 4.32 3.73 30.51 0.11 4.43 16 25 H 0.10 3.26 5.90 -2.39 -0.01 3.24 16 26 C -0.13 -2.93 6.56 32.11 0.21 -2.72 16 27 C -0.14 -2.37 7.03 31.91 0.22 -2.15 16 28 C 0.04 0.84 7.79 72.45 0.56 1.41 16 29 O -0.40 -12.28 11.02 -148.98 -1.64 -13.92 16 30 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 1.72 7.12 -2.39 -0.02 1.70 16 33 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 34 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.41 11.14 7.40 -92.71 -0.69 10.45 16 38 H 0.23 2.78 7.46 -2.91 -0.02 2.75 16 39 H 0.08 1.68 8.05 -2.39 -0.02 1.67 16 40 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.18 365.35 -1.33 -78.51 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -1.56 Total: 22.55 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.77 Total: 19.25 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.87 Total: -130.32 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.70 Total: -37.09 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -77.18 -1.33 -78.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038626233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.710 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds