Wall clock time and date at job start Tue Mar 31 2020 12:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48505 * 109.47386 * 269.99832 * 3 2 1 5 5 H 1.48502 * 109.47202 * 29.99488 * 3 2 1 6 6 H 1.48497 * 109.47330 * 149.99651 * 3 2 1 7 7 C 1.38817 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99478 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.48943 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11524 * 204.63570 * 10 9 7 12 12 C 1.47571 * 134.49227 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.87556 * 269.67700 * 12 9 7 14 14 C 1.52999 * 113.77086 * 41.06255 * 12 9 7 15 15 N 1.46494 * 109.47278 * 281.49345 * 14 12 9 16 16 C 1.34780 * 120.00360 * 180.02562 * 15 14 12 17 17 O 1.21601 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.47427 * 119.99960 * 180.02562 * 16 15 14 19 19 C 1.38046 * 126.41746 * 0.34263 * 18 16 15 20 20 N 1.34260 * 107.41659 * 180.12863 * 19 18 16 21 21 H 0.97001 * 125.75636 * 179.85068 * 20 19 18 22 22 N 1.39936 * 108.49307 * 359.57715 * 20 19 18 23 23 C 1.30455 * 108.89458 * 0.27051 * 22 20 19 24 24 C 1.50698 * 125.98484 * 180.02562 * 23 22 20 25 25 H 1.09003 * 109.82243 * 195.53914 * 24 23 22 26 26 C 1.54380 * 109.83388 * 74.55914 * 24 23 22 27 27 C 1.55301 * 102.25631 * 219.12750 * 26 24 23 28 28 C 1.54945 * 100.94019 * 34.13425 * 27 26 24 29 29 O 1.43239 * 109.83319 * 316.42701 * 24 23 22 30 30 H 0.97002 * 120.00187 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.76860 * 90.33757 * 10 9 7 32 32 H 1.09000 * 113.87252 * 318.95246 * 10 9 7 33 33 H 1.08994 * 113.74136 * 222.04653 * 11 10 9 34 34 H 1.09000 * 113.83486 * 90.75110 * 11 10 9 35 35 H 1.09004 * 109.47328 * 161.49482 * 14 12 9 36 36 H 1.08999 * 109.47265 * 41.49180 * 14 12 9 37 37 H 0.97006 * 120.00111 * 359.97438 * 15 14 12 38 38 H 1.08000 * 126.28896 * 359.96831 * 19 18 16 39 39 H 1.08996 * 110.84779 * 337.32129 * 26 24 23 40 40 H 1.09007 * 110.84991 * 100.93657 * 26 24 23 41 41 H 1.09005 * 111.12340 * 276.21405 * 27 26 24 42 42 H 1.08996 * 111.16377 * 152.06935 * 27 26 24 43 43 H 1.09003 * 110.31149 * 204.64466 * 28 27 26 44 44 H 1.08999 * 110.39509 * 82.51059 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7574 -0.0004 11 6 0.3465 -4.0828 0.6408 12 6 1.7201 -3.8101 0.0005 13 1 1.8327 -4.2367 -0.9961 14 6 2.9023 -4.1221 0.9203 15 7 4.1496 -3.7189 0.2662 16 6 5.3287 -3.8999 0.8936 17 8 5.3571 -4.3975 2.0028 18 6 6.5838 -3.4936 0.2356 19 6 6.7049 -2.9127 -1.0109 20 7 8.0127 -2.7051 -1.2322 21 1 8.3969 -2.3104 -2.0306 22 7 8.7280 -3.1485 -0.1141 23 6 7.8875 -3.6197 0.7654 24 6 8.2446 -4.1967 2.1109 25 1 7.3975 -4.7540 2.5108 26 6 8.6318 -3.0606 3.0819 27 6 9.8187 -3.6859 3.8644 28 6 10.4744 -4.5531 2.7604 29 8 9.3789 -5.0620 1.9831 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5264 -2.8735 -0.9982 32 1 -0.7190 -2.1397 0.6534 33 1 -0.1594 -4.9596 0.2368 34 1 0.3581 -4.0632 1.7306 35 1 2.9297 -5.1921 1.1266 36 1 2.7892 -3.5744 1.8559 37 1 4.1270 -3.3223 -0.6188 38 1 5.8963 -2.6720 -1.6852 39 1 8.9522 -2.1745 2.5341 40 1 7.8056 -2.8255 3.7531 41 1 9.4635 -4.3031 4.6897 42 1 10.5048 -2.9169 4.2192 43 1 11.0348 -5.3743 3.2073 44 1 11.1293 -3.9438 2.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038626240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:18 Heat of formation + Delta-G solvation = 45.601250 kcal Electronic energy + Delta-G solvation = -27176.772780 eV Core-core repulsion = 23325.552746 eV Total energy + Delta-G solvation = -3851.220034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52696 -39.20970 -38.96767 -37.78498 -34.07234 -32.58335 -32.21678 -32.02301 -30.59530 -28.81722 -27.97928 -27.38232 -23.54665 -23.38529 -23.26531 -21.90877 -21.75285 -20.08832 -19.73562 -19.16772 -18.40302 -16.79863 -16.61170 -16.13399 -16.07244 -15.42359 -15.38417 -15.06448 -14.81231 -14.25877 -14.01606 -13.72734 -13.60790 -13.54315 -13.27155 -12.92477 -12.83512 -11.87385 -11.85588 -11.70390 -11.44478 -11.38206 -11.11994 -11.04076 -11.01817 -10.96577 -10.75783 -10.57566 -10.05837 -9.88118 -9.77187 -9.69506 -9.47884 -9.27199 -8.90786 -8.82491 -8.47488 -6.91682 -5.79209 -3.11473 1.49574 2.08027 2.59819 3.33324 3.39594 3.41760 3.60777 3.64000 3.94123 4.27426 4.40298 4.45709 4.63084 4.79138 4.86376 5.09324 5.13692 5.20318 5.33859 5.36721 5.43046 5.55229 5.59852 5.61985 5.62697 5.75323 5.79510 5.88562 5.91765 6.11324 6.13417 6.28288 6.35272 6.41093 6.61807 6.72688 6.89886 6.94007 7.01070 7.23175 7.40110 7.45717 7.57424 7.95306 7.96200 8.62814 9.01563 9.68499 10.57351 11.37574 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003513 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.605087 B = 7968.066268 C = 8705.219152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.158 3.842 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.590 3.410 17 O -0.552 6.552 18 C -0.275 4.275 19 C 0.106 3.894 20 N -0.463 5.463 21 H 0.443 0.557 22 N -0.283 5.283 23 C 0.121 3.879 24 C 0.153 3.847 25 H 0.130 0.870 26 C -0.142 4.142 27 C -0.154 4.154 28 C 0.050 3.950 29 O -0.370 6.370 30 H 0.253 0.747 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.189 0.811 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.227 -7.902 0.341 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.360 5.360 16 C 0.377 3.623 17 O -0.432 6.432 18 C -0.290 4.290 19 C -0.046 4.046 20 N -0.167 5.167 21 H 0.288 0.712 22 N -0.106 5.106 23 C -0.048 4.048 24 C 0.093 3.907 25 H 0.147 0.853 26 C -0.180 4.180 27 C -0.192 4.192 28 C -0.026 4.026 29 O -0.288 6.288 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.232 0.768 38 H 0.206 0.794 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.469 -7.866 0.761 18.268 hybrid contribution -0.272 1.680 -1.034 1.991 sum 16.197 -6.187 -0.273 17.341 Atomic orbital electron populations 1.69813 1.04948 1.25224 1.56636 1.24746 0.95590 0.97340 1.02673 0.86225 0.78778 0.83967 0.77435 1.21772 1.21619 1.20723 1.18931 0.90115 0.81920 1.43607 0.90385 1.46068 1.02290 0.98572 1.85947 1.22194 0.87945 0.89667 0.96860 1.23774 0.96143 0.98925 1.00615 1.22512 0.92446 0.87571 0.95650 0.93364 1.21752 0.82062 0.98810 0.97318 1.45774 1.05892 1.63215 1.21120 1.17186 0.82288 0.77954 0.84859 1.90671 1.87016 1.45872 1.19617 1.20316 0.94685 1.16842 0.97151 1.23234 0.88056 0.96163 0.97180 1.46148 1.04712 1.48873 1.16999 0.71219 1.77133 1.19204 1.19453 0.94765 1.22661 0.89949 0.95841 0.96371 1.21452 0.90864 0.91044 0.87297 0.85259 1.23119 0.98993 0.98059 0.97840 1.23276 0.97491 0.99804 0.98643 1.23378 0.89954 0.97608 0.91701 1.88487 1.21820 1.47727 1.70772 0.93697 0.95630 0.90854 0.92832 0.90454 0.92058 0.90869 0.76765 0.79424 0.90490 0.89065 0.90029 0.89891 0.89768 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 11.39 55.49 0.63 -25.82 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -5.66 10.51 -15.06 -0.16 -5.82 16 8 H 0.08 1.93 7.80 -52.48 -0.41 1.52 16 9 N -0.60 -14.18 3.57 -170.74 -0.61 -14.79 16 10 C 0.16 3.54 7.51 -2.97 -0.02 3.52 16 11 C -0.16 -2.76 7.86 -25.78 -0.20 -2.96 16 12 C 0.13 2.32 4.33 -66.85 -0.29 2.03 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.13 2.19 5.54 -4.05 -0.02 2.17 16 15 N -0.71 -11.61 5.52 -61.39 -0.34 -11.95 16 16 C 0.59 10.10 7.81 -12.52 -0.10 10.01 16 17 O -0.55 -10.78 14.67 5.28 0.08 -10.70 16 18 C -0.27 -4.13 6.13 -105.07 -0.64 -4.77 16 19 C 0.11 1.22 11.52 -16.56 -0.19 1.03 16 20 N -0.46 -4.99 7.29 30.85 0.22 -4.77 16 21 H 0.44 3.05 8.96 -182.72 -1.64 1.41 16 22 N -0.28 -4.01 12.63 33.90 0.43 -3.58 16 23 C 0.12 1.84 6.02 -82.02 -0.49 1.34 16 24 C 0.15 2.22 3.81 -27.16 -0.10 2.11 16 25 H 0.13 2.08 5.92 -51.93 -0.31 1.77 16 26 C -0.14 -1.70 6.53 -24.79 -0.16 -1.87 16 27 C -0.15 -1.45 7.16 -24.48 -0.18 -1.63 16 28 C 0.05 0.53 7.78 38.18 0.30 0.82 16 29 O -0.37 -5.33 11.00 -35.23 -0.39 -5.71 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.84 7.16 -51.93 -0.37 1.46 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.40 5.91 7.40 -40.82 -0.30 5.61 16 38 H 0.19 1.55 7.46 -52.49 -0.39 1.16 16 39 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 40 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -33.98 365.31 -9.46 -43.44 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.61 Total: 6.17 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -2.36 Total: 5.71 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.34 Total: -60.91 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.31 Total: -16.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.98 -9.46 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038626240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.044 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds