Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48505 * 109.47386 * 269.99832 * 3 2 1 5 5 H 1.48502 * 109.47202 * 29.99488 * 3 2 1 6 6 H 1.48497 * 109.47330 * 149.99651 * 3 2 1 7 7 C 1.38817 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99478 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.48943 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11524 * 204.63570 * 10 9 7 12 12 C 1.47571 * 134.49227 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.87556 * 269.67700 * 12 9 7 14 14 C 1.52999 * 113.77086 * 41.06255 * 12 9 7 15 15 N 1.46494 * 109.47278 * 281.49345 * 14 12 9 16 16 C 1.34780 * 120.00360 * 180.02562 * 15 14 12 17 17 O 1.21601 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.47427 * 119.99960 * 180.02562 * 16 15 14 19 19 C 1.38046 * 126.41746 * 0.34263 * 18 16 15 20 20 N 1.34260 * 107.41659 * 180.12863 * 19 18 16 21 21 H 0.97001 * 125.75636 * 179.85068 * 20 19 18 22 22 N 1.39936 * 108.49307 * 359.57715 * 20 19 18 23 23 C 1.30455 * 108.89458 * 0.27051 * 22 20 19 24 24 C 1.50698 * 125.98484 * 180.02562 * 23 22 20 25 25 H 1.09003 * 109.82243 * 195.53914 * 24 23 22 26 26 C 1.54380 * 109.83388 * 74.55914 * 24 23 22 27 27 C 1.55301 * 102.25631 * 219.12750 * 26 24 23 28 28 C 1.54945 * 100.94019 * 34.13425 * 27 26 24 29 29 O 1.43239 * 109.83319 * 316.42701 * 24 23 22 30 30 H 0.97002 * 120.00187 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.76860 * 90.33757 * 10 9 7 32 32 H 1.09000 * 113.87252 * 318.95246 * 10 9 7 33 33 H 1.08994 * 113.74136 * 222.04653 * 11 10 9 34 34 H 1.09000 * 113.83486 * 90.75110 * 11 10 9 35 35 H 1.09004 * 109.47328 * 161.49482 * 14 12 9 36 36 H 1.08999 * 109.47265 * 41.49180 * 14 12 9 37 37 H 0.97006 * 120.00111 * 359.97438 * 15 14 12 38 38 H 1.08000 * 126.28896 * 359.96831 * 19 18 16 39 39 H 1.08996 * 110.84779 * 337.32129 * 26 24 23 40 40 H 1.09007 * 110.84991 * 100.93657 * 26 24 23 41 41 H 1.09005 * 111.12340 * 276.21405 * 27 26 24 42 42 H 1.08996 * 111.16377 * 152.06935 * 27 26 24 43 43 H 1.09003 * 110.31149 * 204.64466 * 28 27 26 44 44 H 1.08999 * 110.39509 * 82.51059 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7574 -0.0004 11 6 0.3465 -4.0828 0.6408 12 6 1.7201 -3.8101 0.0005 13 1 1.8327 -4.2367 -0.9961 14 6 2.9023 -4.1221 0.9203 15 7 4.1496 -3.7189 0.2662 16 6 5.3287 -3.8999 0.8936 17 8 5.3571 -4.3975 2.0028 18 6 6.5838 -3.4936 0.2356 19 6 6.7049 -2.9127 -1.0109 20 7 8.0127 -2.7051 -1.2322 21 1 8.3969 -2.3104 -2.0306 22 7 8.7280 -3.1485 -0.1141 23 6 7.8875 -3.6197 0.7654 24 6 8.2446 -4.1967 2.1109 25 1 7.3975 -4.7540 2.5108 26 6 8.6318 -3.0606 3.0819 27 6 9.8187 -3.6859 3.8644 28 6 10.4744 -4.5531 2.7604 29 8 9.3789 -5.0620 1.9831 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5264 -2.8735 -0.9982 32 1 -0.7190 -2.1397 0.6534 33 1 -0.1594 -4.9596 0.2368 34 1 0.3581 -4.0632 1.7306 35 1 2.9297 -5.1921 1.1266 36 1 2.7892 -3.5744 1.8559 37 1 4.1270 -3.3223 -0.6188 38 1 5.8963 -2.6720 -1.6852 39 1 8.9522 -2.1745 2.5341 40 1 7.8056 -2.8255 3.7531 41 1 9.4635 -4.3031 4.6897 42 1 10.5048 -2.9169 4.2192 43 1 11.0348 -5.3743 3.2073 44 1 11.1293 -3.9438 2.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038626240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = 20.403911 kcal Electronic energy + Delta-G solvation = -27177.865419 eV Core-core repulsion = 23325.552746 eV Total energy + Delta-G solvation = -3852.312673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55700 -40.38470 -40.15055 -39.34480 -35.47789 -34.16133 -33.59899 -32.92845 -31.73498 -29.85842 -29.75266 -28.80934 -25.24183 -24.56220 -24.49660 -23.24360 -22.64117 -21.33852 -20.92364 -20.63622 -19.57762 -18.47445 -17.55525 -17.35482 -17.06892 -17.02875 -16.77768 -16.33811 -15.92343 -15.77226 -15.38314 -15.34925 -14.78939 -14.58013 -14.44119 -14.38481 -13.86572 -13.51824 -13.22191 -12.92471 -12.75544 -12.67539 -12.62498 -12.52786 -12.30497 -12.22273 -12.04537 -11.87963 -11.77147 -11.47282 -11.32363 -10.89339 -10.80539 -10.75854 -10.42704 -10.11672 -9.72348 -8.83308 -7.82356 -5.13270 0.50082 0.95656 1.44803 1.47729 1.54487 1.72669 2.32011 2.42308 2.51422 2.96860 3.29747 3.39053 3.44864 3.53000 3.69883 3.94611 3.99874 4.03569 4.16555 4.21812 4.32644 4.35227 4.39158 4.42468 4.63083 4.71774 4.78403 4.78853 4.85336 4.91086 4.94693 5.00291 5.11514 5.16213 5.18460 5.26086 5.39741 5.54478 5.67035 5.80908 5.98190 6.02780 6.20698 6.43478 6.70281 7.00157 7.34337 7.70752 8.65689 9.34843 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003513 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.605087 B = 7968.066268 C = 8705.219152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.207 4.207 8 H 0.088 0.912 9 N -0.628 5.628 10 C 0.149 3.851 11 C -0.133 4.133 12 C 0.135 3.865 13 H 0.074 0.926 14 C 0.135 3.865 15 N -0.706 5.706 16 C 0.589 3.411 17 O -0.584 6.584 18 C -0.311 4.311 19 C 0.133 3.867 20 N -0.444 5.444 21 H 0.462 0.538 22 N -0.301 5.301 23 C 0.107 3.893 24 C 0.150 3.850 25 H 0.106 0.894 26 C -0.140 4.140 27 C -0.144 4.144 28 C 0.043 3.957 29 O -0.392 6.392 30 H 0.243 0.757 31 H 0.023 0.977 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.407 0.593 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.022 -8.524 -0.669 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.336 4.336 8 H 0.106 0.894 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.029 3.971 13 H 0.092 0.908 14 C 0.010 3.990 15 N -0.356 5.356 16 C 0.378 3.622 17 O -0.466 6.466 18 C -0.326 4.326 19 C -0.021 4.021 20 N -0.150 5.150 21 H 0.310 0.690 22 N -0.124 5.124 23 C -0.061 4.061 24 C 0.090 3.910 25 H 0.123 0.877 26 C -0.179 4.179 27 C -0.181 4.181 28 C -0.033 4.033 29 O -0.311 6.311 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.242 0.758 38 H 0.242 0.758 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.321 -8.510 -0.286 20.203 hybrid contribution -0.786 1.792 -0.763 2.100 sum 17.535 -6.718 -1.048 18.807 Atomic orbital electron populations 1.70000 1.06295 1.25008 1.59268 1.25473 0.96316 1.00371 1.04233 0.85279 0.77590 0.80326 0.77385 1.21122 1.23048 1.19925 1.19324 0.90779 0.82927 1.40567 0.89390 1.46408 1.03168 1.00004 1.85878 1.22157 0.87226 0.91790 0.96417 1.23579 0.95315 0.97788 1.00435 1.22670 0.93108 0.84494 0.96867 0.90832 1.21531 0.82352 0.99391 0.95763 1.45677 1.05330 1.63239 1.21366 1.17481 0.82979 0.77281 0.84497 1.90654 1.87513 1.47375 1.21103 1.20266 0.93693 1.19679 0.98958 1.23680 0.88906 0.93463 0.96068 1.46182 1.04483 1.47562 1.16813 0.68958 1.77073 1.19681 1.20066 0.95556 1.22797 0.90339 0.96187 0.96809 1.21330 0.90368 0.91466 0.87840 0.87654 1.23086 0.99924 0.97295 0.97570 1.23276 0.96598 1.00111 0.98147 1.23612 0.89181 0.98656 0.91819 1.88449 1.22621 1.48414 1.71652 0.94746 0.95963 0.94505 0.88893 0.90491 0.90240 0.93963 0.75757 0.75813 0.90912 0.89593 0.89251 0.87560 0.87719 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.34 11.39 21.65 0.25 -56.09 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 44.50 29.55 68.60 2.03 46.52 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.21 -10.63 10.51 84.03 0.88 -9.74 16 8 H 0.09 4.22 7.80 -2.91 -0.02 4.20 16 9 N -0.63 -29.04 3.57 -694.09 -2.48 -31.52 16 10 C 0.15 6.66 7.51 86.48 0.65 7.30 16 11 C -0.13 -4.41 7.86 31.27 0.25 -4.16 16 12 C 0.13 4.65 4.33 45.11 0.20 4.84 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 14 C 0.13 4.50 5.54 86.38 0.48 4.98 16 15 N -0.71 -21.87 5.52 -466.38 -2.57 -24.44 16 16 C 0.59 19.78 7.81 86.66 0.68 20.46 16 17 O -0.58 -23.13 14.67 -4.03 -0.06 -23.19 16 18 C -0.31 -8.97 6.13 -20.15 -0.12 -9.09 16 19 C 0.13 2.68 11.52 84.28 0.97 3.65 16 20 N -0.44 -8.38 7.29 -56.31 -0.41 -8.79 16 21 H 0.46 4.84 8.96 -213.43 -1.91 2.93 16 22 N -0.30 -8.10 12.63 -46.67 -0.59 -8.69 16 23 C 0.11 3.21 6.02 43.51 0.26 3.47 16 24 C 0.15 4.39 3.81 30.32 0.12 4.50 16 25 H 0.11 3.55 5.92 -2.39 -0.01 3.54 16 26 C -0.14 -3.34 6.53 31.85 0.21 -3.14 16 27 C -0.14 -2.49 7.16 32.05 0.23 -2.26 16 28 C 0.04 0.85 7.78 72.65 0.56 1.42 16 29 O -0.39 -11.25 11.00 -148.98 -1.64 -12.89 16 30 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.90 7.16 -2.39 -0.02 1.88 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.58 8.10 -2.39 -0.02 2.57 16 35 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.41 10.99 7.40 -92.70 -0.69 10.30 16 38 H 0.23 2.72 7.46 -2.91 -0.02 2.69 16 39 H 0.07 1.76 7.84 -2.39 -0.02 1.75 16 40 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -75.81 365.31 -1.21 -77.02 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -1.56 Total: 23.29 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 5.82 Total: 18.78 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.81 Total: -129.54 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.70 Total: -36.08 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -75.81 -1.21 -77.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038626240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.428 kcal (2) G-P(sol) polarization free energy of solvation -75.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds