Wall clock time and date at job start Tue Mar 31 2020 12:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.52998 * 113.46518 * 37.77573 * 12 9 7 15 15 N 1.46499 * 109.47563 * 285.49942 * 14 12 9 16 16 C 1.34770 * 120.00009 * 180.02562 * 15 14 12 17 17 O 1.21602 * 120.00484 * 359.97438 * 16 15 14 18 18 C 1.47433 * 120.00087 * 180.02562 * 16 15 14 19 19 C 1.38045 * 126.41209 * 0.02562 * 18 16 15 20 20 N 1.34253 * 107.41862 * 179.97438 * 19 18 16 21 21 H 0.96998 * 125.76289 * 179.97438 * 20 19 18 22 22 N 1.39935 * 108.49006 * 359.97438 * 20 19 18 23 23 C 1.30447 * 108.89741 * 359.74122 * 22 20 19 24 24 C 1.50702 * 125.98714 * 180.26465 * 23 22 20 25 25 H 1.09012 * 109.86707 * 164.46181 * 24 23 22 26 26 C 1.54099 * 109.87875 * 285.46873 * 24 23 22 27 27 C 1.54808 * 104.18485 * 121.45724 * 26 24 23 28 28 C 1.54998 * 102.09430 * 20.88284 * 27 26 24 29 29 O 1.43743 * 109.88356 * 43.46132 * 24 23 22 30 30 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 31 31 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 32 32 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 33 33 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 34 34 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 35 35 H 1.09007 * 109.46935 * 45.50086 * 14 12 9 36 36 H 1.09003 * 109.47247 * 165.49408 * 14 12 9 37 37 H 0.97004 * 119.99950 * 359.97438 * 15 14 12 38 38 H 1.08003 * 126.29455 * 0.02562 * 19 18 16 39 39 H 1.08996 * 110.48692 * 240.13255 * 26 24 23 40 40 H 1.08994 * 110.48886 * 2.78279 * 26 24 23 41 41 H 1.09004 * 110.90723 * 139.07739 * 27 26 24 42 42 H 1.09001 * 110.90919 * 262.68164 * 27 26 24 43 43 H 1.08996 * 110.62003 * 81.47455 * 28 27 26 44 44 H 1.09001 * 110.61727 * 204.31395 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9031 -4.1396 0.8603 15 7 4.1162 -3.6901 0.1727 16 6 5.3223 -3.8727 0.7456 17 8 5.4038 -4.4101 1.8334 18 6 6.5431 -3.4198 0.0540 19 6 6.6045 -2.7969 -1.1764 20 7 7.8983 -2.5525 -1.4389 21 1 8.2433 -2.1223 -2.2368 22 7 8.6652 -3.0230 -0.3671 23 6 7.8684 -3.5358 0.5295 24 6 8.2885 -4.1482 1.8408 25 1 7.4249 -4.2417 2.4995 26 6 8.9128 -5.5354 1.5952 27 6 10.3386 -5.4200 2.1872 28 6 10.1903 -4.2223 3.1599 29 8 9.2918 -3.3288 2.4639 30 1 -0.4849 0.8401 -0.0004 31 1 -0.7200 -2.1579 0.6255 32 1 -0.4978 -2.9554 -0.9903 33 1 -0.1719 -4.9834 0.3522 34 1 0.3904 -4.0224 1.7929 35 1 2.8187 -3.6288 1.8195 36 1 2.9565 -5.2157 1.0252 37 1 4.0513 -3.2617 -0.6952 38 1 5.7659 -2.5505 -1.8108 39 1 8.3451 -6.3068 2.1154 40 1 8.9592 -5.7493 0.5274 41 1 10.6106 -6.3275 2.7262 42 1 11.0671 -5.1995 1.4069 43 1 9.7515 -4.5463 4.1035 44 1 11.1552 -3.7448 3.3305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038626248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:21 Heat of formation + Delta-G solvation = 50.480344 kcal Electronic energy + Delta-G solvation = -27183.079106 eV Core-core repulsion = 23332.070645 eV Total energy + Delta-G solvation = -3851.008461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52070 -39.17406 -39.02055 -37.92913 -34.06124 -32.61765 -32.24752 -31.98184 -30.59134 -28.74029 -28.03755 -27.34129 -23.63443 -23.49309 -23.19060 -21.80506 -21.70276 -20.09656 -19.78228 -19.25603 -18.41282 -16.79827 -16.39997 -16.11188 -16.05711 -15.43173 -15.34509 -15.07652 -14.90588 -14.24040 -14.02741 -13.74342 -13.69577 -13.61029 -13.16514 -12.89307 -12.84480 -11.88994 -11.84617 -11.73140 -11.54512 -11.38204 -11.13031 -11.00176 -10.98573 -10.87094 -10.78375 -10.59399 -10.06504 -9.91369 -9.84985 -9.68247 -9.42855 -9.18726 -8.90104 -8.83765 -8.45801 -6.92475 -5.79711 -3.12169 1.50498 2.07874 2.60686 3.34456 3.42062 3.43175 3.55408 3.71801 3.93461 4.29731 4.41016 4.51622 4.65735 4.78021 4.86606 5.07446 5.16395 5.21312 5.33936 5.37341 5.42750 5.52140 5.57123 5.58079 5.63654 5.76172 5.79605 5.88947 5.91088 6.04525 6.12120 6.27736 6.34698 6.40693 6.59046 6.72719 6.81082 6.91802 7.01620 7.20757 7.37821 7.46877 7.55749 7.94883 7.96971 8.63692 9.00143 9.67600 10.60483 11.37511 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003530 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.176030 B = 7931.169875 C = 8832.674152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.710 5.710 16 C 0.590 3.410 17 O -0.553 6.553 18 C -0.275 4.275 19 C 0.107 3.893 20 N -0.462 5.462 21 H 0.444 0.556 22 N -0.277 5.277 23 C 0.131 3.869 24 C 0.149 3.851 25 H 0.119 0.881 26 C -0.140 4.140 27 C -0.153 4.153 28 C 0.046 3.954 29 O -0.366 6.366 30 H 0.253 0.747 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.399 0.601 38 H 0.190 0.810 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -11.509 -1.630 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.377 3.623 17 O -0.433 6.433 18 C -0.290 4.290 19 C -0.046 4.046 20 N -0.167 5.167 21 H 0.288 0.712 22 N -0.100 5.100 23 C -0.038 4.038 24 C 0.089 3.911 25 H 0.136 0.864 26 C -0.178 4.178 27 C -0.190 4.190 28 C -0.031 4.031 29 O -0.284 6.284 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.206 0.794 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.470 -11.017 -1.152 19.848 hybrid contribution -0.363 1.216 -1.036 1.638 sum 16.107 -9.801 -2.187 18.981 Atomic orbital electron populations 1.69824 1.04970 1.25280 1.56391 1.24763 0.95615 0.97381 1.02563 0.86212 0.78859 0.83826 0.77476 1.21715 1.21570 1.20584 1.18839 0.89990 0.81328 1.43933 0.90181 1.45651 1.02598 0.98576 1.85927 1.22025 0.88710 0.90226 0.96462 1.23664 0.96927 0.99012 1.00404 1.22421 0.92091 0.87706 0.95839 0.93502 1.21798 0.82951 0.98260 0.97113 1.45772 1.05721 1.61190 1.23239 1.17184 0.82168 0.78348 0.84609 1.90670 1.86736 1.45010 1.20843 1.20303 0.94474 1.16109 0.98126 1.23241 0.88680 0.95744 0.96912 1.46159 1.04605 1.47316 1.18641 0.71167 1.77177 1.18127 1.18508 0.96188 1.22183 0.90028 0.96345 0.95268 1.21396 0.93119 0.88167 0.88403 0.86402 1.22907 0.95712 0.96696 1.02532 1.23125 0.97268 0.99176 0.99468 1.23576 0.94216 0.90233 0.95059 1.88994 1.40742 1.30397 1.68299 0.93678 0.91020 0.95754 0.92391 0.90169 0.90997 0.92188 0.76672 0.79362 0.89755 0.90582 0.90143 0.90509 0.91904 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 11.51 55.49 0.64 -25.92 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.21 -5.57 10.55 -15.06 -0.16 -5.73 16 8 H 0.08 2.00 7.51 -52.49 -0.39 1.60 16 9 N -0.60 -14.21 3.65 -176.98 -0.65 -14.85 16 10 C 0.15 3.38 7.39 -8.50 -0.06 3.32 16 11 C -0.16 -2.85 8.03 -26.21 -0.21 -3.06 16 12 C 0.13 2.35 4.10 -72.39 -0.30 2.05 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.17 5.52 -4.04 -0.02 2.14 16 15 N -0.71 -11.72 5.32 -61.38 -0.33 -12.05 16 16 C 0.59 10.19 7.81 -12.52 -0.10 10.09 16 17 O -0.55 -10.86 14.67 5.28 0.08 -10.78 16 18 C -0.28 -4.18 6.13 -105.07 -0.64 -4.82 16 19 C 0.11 1.25 11.52 -16.56 -0.19 1.06 16 20 N -0.46 -5.09 7.29 30.85 0.22 -4.86 16 21 H 0.44 3.14 8.96 -182.72 -1.64 1.50 16 22 N -0.28 -4.02 12.63 33.89 0.43 -3.59 16 23 C 0.13 2.02 5.94 -82.02 -0.49 1.53 16 24 C 0.15 2.18 3.69 -27.31 -0.10 2.08 16 25 H 0.12 1.93 5.93 -51.92 -0.31 1.63 16 26 C -0.14 -1.59 6.63 -25.20 -0.17 -1.76 16 27 C -0.15 -1.41 7.16 -24.72 -0.18 -1.59 16 28 C 0.05 0.48 7.72 38.21 0.29 0.77 16 29 O -0.37 -5.50 11.19 -35.23 -0.39 -5.90 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.80 7.13 -51.93 -0.37 1.43 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 6.05 7.31 -40.82 -0.30 5.75 16 38 H 0.19 1.60 7.46 -52.48 -0.39 1.21 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -34.45 364.67 -9.53 -43.97 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.58 Total: 5.96 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.42 Total: 5.82 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.32 Total: -61.28 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.32 Total: -16.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.45 -9.53 -43.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038626248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.453 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds