Wall clock time and date at job start Tue Mar 31 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.52998 * 113.46518 * 37.77573 * 12 9 7 15 15 N 1.46499 * 109.47563 * 285.49942 * 14 12 9 16 16 C 1.34770 * 120.00009 * 180.02562 * 15 14 12 17 17 O 1.21602 * 120.00484 * 359.97438 * 16 15 14 18 18 C 1.47433 * 120.00087 * 180.02562 * 16 15 14 19 19 C 1.38045 * 126.41209 * 0.02562 * 18 16 15 20 20 N 1.34253 * 107.41862 * 179.97438 * 19 18 16 21 21 H 0.96998 * 125.76289 * 179.97438 * 20 19 18 22 22 N 1.39935 * 108.49006 * 359.97438 * 20 19 18 23 23 C 1.30447 * 108.89741 * 359.74122 * 22 20 19 24 24 C 1.50702 * 125.98714 * 180.26465 * 23 22 20 25 25 H 1.09012 * 109.86707 * 164.46181 * 24 23 22 26 26 C 1.54099 * 109.87875 * 285.46873 * 24 23 22 27 27 C 1.54808 * 104.18485 * 121.45724 * 26 24 23 28 28 C 1.54998 * 102.09430 * 20.88284 * 27 26 24 29 29 O 1.43743 * 109.88356 * 43.46132 * 24 23 22 30 30 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 31 31 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 32 32 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 33 33 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 34 34 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 35 35 H 1.09007 * 109.46935 * 45.50086 * 14 12 9 36 36 H 1.09003 * 109.47247 * 165.49408 * 14 12 9 37 37 H 0.97004 * 119.99950 * 359.97438 * 15 14 12 38 38 H 1.08003 * 126.29455 * 0.02562 * 19 18 16 39 39 H 1.08996 * 110.48692 * 240.13255 * 26 24 23 40 40 H 1.08994 * 110.48886 * 2.78279 * 26 24 23 41 41 H 1.09004 * 110.90723 * 139.07739 * 27 26 24 42 42 H 1.09001 * 110.90919 * 262.68164 * 27 26 24 43 43 H 1.08996 * 110.62003 * 81.47455 * 28 27 26 44 44 H 1.09001 * 110.61727 * 204.31395 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9031 -4.1396 0.8603 15 7 4.1162 -3.6901 0.1727 16 6 5.3223 -3.8727 0.7456 17 8 5.4038 -4.4101 1.8334 18 6 6.5431 -3.4198 0.0540 19 6 6.6045 -2.7969 -1.1764 20 7 7.8983 -2.5525 -1.4389 21 1 8.2433 -2.1223 -2.2368 22 7 8.6652 -3.0230 -0.3671 23 6 7.8684 -3.5358 0.5295 24 6 8.2885 -4.1482 1.8408 25 1 7.4249 -4.2417 2.4995 26 6 8.9128 -5.5354 1.5952 27 6 10.3386 -5.4200 2.1872 28 6 10.1903 -4.2223 3.1599 29 8 9.2918 -3.3288 2.4639 30 1 -0.4849 0.8401 -0.0004 31 1 -0.7200 -2.1579 0.6255 32 1 -0.4978 -2.9554 -0.9903 33 1 -0.1719 -4.9834 0.3522 34 1 0.3904 -4.0224 1.7929 35 1 2.8187 -3.6288 1.8195 36 1 2.9565 -5.2157 1.0252 37 1 4.0513 -3.2617 -0.6952 38 1 5.7659 -2.5505 -1.8108 39 1 8.3451 -6.3068 2.1154 40 1 8.9592 -5.7493 0.5274 41 1 10.6106 -6.3275 2.7262 42 1 11.0671 -5.1995 1.4069 43 1 9.7515 -4.5463 4.1035 44 1 11.1552 -3.7448 3.3305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038626248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:20 Heat of formation + Delta-G solvation = 24.686529 kcal Electronic energy + Delta-G solvation = -27184.197610 eV Core-core repulsion = 23332.070645 eV Total energy + Delta-G solvation = -3852.126965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56360 -40.46682 -40.11837 -39.46406 -35.46895 -34.20976 -33.63994 -32.87729 -31.74107 -29.90951 -29.68856 -28.76325 -25.35247 -24.58079 -24.47264 -23.15837 -22.57516 -21.34484 -21.02526 -20.71913 -19.58161 -18.48565 -17.41966 -17.27079 -17.05226 -17.01652 -16.77200 -16.26821 -16.08339 -15.81223 -15.37490 -15.33814 -14.81935 -14.58792 -14.53464 -14.31265 -13.85220 -13.55794 -13.27739 -12.95047 -12.70396 -12.68859 -12.64386 -12.53159 -12.33661 -12.21512 -12.03835 -11.82765 -11.68580 -11.58308 -11.21689 -10.91463 -10.81817 -10.72545 -10.46583 -10.11582 -9.72555 -8.84783 -7.84371 -5.14987 0.49465 0.94571 1.43758 1.47548 1.53812 1.72072 2.28306 2.45266 2.50476 2.97691 3.31399 3.38860 3.49884 3.59538 3.74509 3.96316 3.98618 3.99598 4.13121 4.20304 4.33512 4.36815 4.41539 4.42092 4.63148 4.71653 4.76620 4.79979 4.87432 4.91058 4.95070 5.03426 5.10791 5.15273 5.17524 5.22158 5.38244 5.54570 5.64217 5.80047 5.87562 6.01044 6.20064 6.43364 6.70142 6.97544 7.33984 7.68346 8.68253 9.33591 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003530 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.176030 B = 7931.169875 C = 8832.674152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.277 1.277 7 C -0.201 4.201 8 H 0.090 0.910 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.136 4.136 12 C 0.136 3.864 13 H 0.074 0.926 14 C 0.132 3.868 15 N -0.706 5.706 16 C 0.589 3.411 17 O -0.584 6.584 18 C -0.311 4.311 19 C 0.133 3.867 20 N -0.444 5.444 21 H 0.462 0.538 22 N -0.297 5.297 23 C 0.117 3.883 24 C 0.143 3.857 25 H 0.092 0.908 26 C -0.135 4.135 27 C -0.142 4.142 28 C 0.036 3.964 29 O -0.396 6.396 30 H 0.244 0.756 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.407 0.593 38 H 0.226 0.774 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.865 -12.866 -2.927 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.330 4.330 8 H 0.107 0.893 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.175 4.175 12 C 0.030 3.970 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.356 5.356 16 C 0.377 3.623 17 O -0.467 6.467 18 C -0.326 4.326 19 C -0.021 4.021 20 N -0.150 5.150 21 H 0.311 0.689 22 N -0.120 5.120 23 C -0.052 4.052 24 C 0.084 3.916 25 H 0.109 0.891 26 C -0.174 4.174 27 C -0.179 4.179 28 C -0.040 4.040 29 O -0.315 6.315 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.242 0.758 38 H 0.242 0.758 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.198 -12.398 -2.486 22.159 hybrid contribution -0.854 1.588 -0.641 1.914 sum 17.344 -10.809 -3.127 20.674 Atomic orbital electron populations 1.70005 1.06272 1.25050 1.59104 1.25473 0.96320 1.00332 1.04192 0.85284 0.77497 0.80343 0.77495 1.20871 1.22974 1.20194 1.19210 0.90616 0.82366 1.40771 0.89279 1.45966 1.03581 1.00073 1.85872 1.22041 0.87845 0.92075 0.96359 1.23491 0.96019 0.98089 0.99907 1.22566 0.92784 0.84590 0.97108 0.90880 1.21593 0.83135 0.99076 0.95462 1.45684 1.05235 1.61227 1.23415 1.17472 0.82797 0.77731 0.84257 1.90652 1.87215 1.46503 1.22287 1.20258 0.93558 1.18842 0.99929 1.23681 0.89598 0.93103 0.95703 1.46191 1.04285 1.46085 1.18462 0.68919 1.77115 1.18774 1.19135 0.96975 1.22360 0.90416 0.96634 0.95757 1.21325 0.92552 0.89846 0.87896 0.89069 1.22879 0.96972 0.94973 1.02558 1.23108 0.95786 0.99779 0.99254 1.23863 0.94285 0.90442 0.95370 1.88949 1.41456 1.32212 1.68895 0.94707 0.94851 0.95789 0.88239 0.90454 0.94203 0.90104 0.75768 0.75814 0.89130 0.90903 0.87386 0.90350 0.91068 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 11.51 21.65 0.25 -56.36 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.96 45.09 29.55 68.60 2.03 47.12 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.20 -10.39 10.55 84.03 0.89 -9.50 16 8 H 0.09 4.32 7.51 -2.91 -0.02 4.30 16 9 N -0.63 -29.18 3.65 -713.85 -2.61 -31.78 16 10 C 0.14 6.32 7.39 83.18 0.61 6.93 16 11 C -0.14 -4.51 8.03 30.94 0.25 -4.26 16 12 C 0.14 4.68 4.10 41.80 0.17 4.86 16 13 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 14 C 0.13 4.42 5.52 86.38 0.48 4.90 16 15 N -0.71 -22.13 5.32 -466.37 -2.48 -24.61 16 16 C 0.59 19.96 7.81 86.67 0.68 20.64 16 17 O -0.58 -23.24 14.67 -4.04 -0.06 -23.30 16 18 C -0.31 -9.10 6.13 -20.15 -0.12 -9.23 16 19 C 0.13 2.76 11.52 84.28 0.97 3.73 16 20 N -0.44 -8.63 7.29 -56.32 -0.41 -9.04 16 21 H 0.46 5.09 8.96 -213.43 -1.91 3.18 16 22 N -0.30 -8.23 12.63 -46.68 -0.59 -8.82 16 23 C 0.12 3.56 5.94 43.51 0.26 3.82 16 24 C 0.14 4.26 3.69 30.22 0.11 4.37 16 25 H 0.09 3.14 5.93 -2.38 -0.01 3.13 16 26 C -0.14 -2.99 6.63 31.58 0.21 -2.78 16 27 C -0.14 -2.37 7.16 31.89 0.23 -2.14 16 28 C 0.04 0.72 7.72 72.67 0.56 1.28 16 29 O -0.40 -11.96 11.19 -148.98 -1.67 -13.63 16 30 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.03 1.72 7.13 -2.39 -0.02 1.70 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 35 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.41 11.28 7.31 -92.70 -0.68 10.61 16 38 H 0.23 2.86 7.46 -2.91 -0.02 2.84 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.22 364.67 -1.33 -78.55 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -1.55 Total: 22.68 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.76 Total: 19.19 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.84 Total: -130.61 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.73 Total: -36.93 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.22 -1.33 -78.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038626248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.235 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds