Wall clock time and date at job start Tue Mar 31 2020 12:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00412 * 2 1 4 4 H 1.48504 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46904 * 60.00362 * 3 2 1 6 6 H 1.48498 * 109.47367 * 300.00353 * 3 2 1 7 7 C 1.38815 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99660 * 320.11260 * 7 2 1 9 9 N 1.36929 * 120.00364 * 140.11027 * 7 2 1 10 10 C 1.47026 * 125.64989 * 335.64265 * 9 7 2 11 11 C 1.54320 * 107.27540 * 181.02119 * 10 9 7 12 12 C 1.55154 * 102.94204 * 22.18792 * 11 10 9 13 13 H 1.09004 * 111.00459 * 82.60984 * 12 11 10 14 14 N 1.46903 * 111.00808 * 206.42490 * 12 11 10 15 15 C 1.46893 * 110.99866 * 304.30618 * 14 12 11 16 16 C 1.53238 * 109.34069 * 172.74210 * 15 14 12 17 17 N 1.47085 * 108.51944 * 53.83158 * 16 15 14 18 18 C 1.34773 * 120.88170 * 128.79329 * 17 16 15 19 19 O 1.21687 * 119.99812 * 175.74789 * 18 17 16 20 20 C 1.46721 * 120.00287 * 355.75632 * 18 17 16 21 21 C 1.36339 * 126.64281 * 186.74494 * 20 18 17 22 22 N 1.33702 * 107.45141 * 179.97438 * 21 20 18 23 23 C 1.30621 * 108.99304 * 359.97438 * 22 21 20 24 24 O 1.33665 * 109.15505 * 359.72996 * 23 22 21 25 25 C 1.47082 * 118.23458 * 308.81313 * 17 16 15 26 26 C 1.46892 * 111.00224 * 180.02562 * 14 12 11 27 27 C 1.47431 * 125.65141 * 155.32951 * 9 7 2 28 28 H 0.96996 * 120.00693 * 185.27342 * 1 2 3 29 29 H 1.09005 * 109.87915 * 300.43451 * 10 9 7 30 30 H 1.09006 * 109.88306 * 61.44320 * 10 9 7 31 31 H 1.08997 * 110.72366 * 140.55406 * 11 10 9 32 32 H 1.09004 * 110.71702 * 263.65111 * 11 10 9 33 33 H 1.08997 * 109.49625 * 292.70470 * 15 14 12 34 34 H 1.09003 * 109.49836 * 52.78222 * 15 14 12 35 35 H 1.08995 * 109.62879 * 294.11975 * 16 15 14 36 36 H 1.09008 * 109.78904 * 173.63013 * 16 15 14 37 37 H 1.07993 * 126.27651 * 359.95889 * 21 20 18 38 38 H 1.08000 * 125.41672 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.62922 * 291.47897 * 25 17 16 40 40 H 1.08999 * 109.62475 * 170.89865 * 25 17 16 41 41 H 1.09002 * 109.49504 * 307.21502 * 26 14 12 42 42 H 1.09001 * 109.49446 * 67.26724 * 26 14 12 43 43 H 1.09007 * 110.36355 * 274.75226 * 27 9 7 44 44 H 1.08997 * 110.36445 * 37.07017 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 1.2126 6 1 1.8915 2.3964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 1.6585 -2.0290 0.5989 9 7 3.1405 -1.3400 -0.7611 10 6 3.4646 -0.5588 -1.9637 11 6 4.8171 -1.0771 -2.4961 12 6 4.9062 -2.5024 -1.8896 13 1 4.3485 -3.2192 -2.4925 14 7 6.3053 -2.9232 -1.7366 15 6 7.0220 -2.8430 -3.0163 16 6 8.5120 -3.1131 -2.7814 17 7 8.6483 -4.3941 -2.0715 18 6 9.4790 -5.3525 -2.5272 19 8 9.6381 -6.3748 -1.8864 20 6 10.1917 -5.1634 -3.7956 21 6 10.9579 -6.0862 -4.4439 22 7 11.4218 -5.5107 -5.5580 23 6 10.9760 -4.2845 -5.6204 24 8 10.2099 -4.0414 -4.5524 25 6 7.8535 -4.6015 -0.8514 26 6 6.3895 -4.2729 -1.1629 27 6 4.2371 -2.2918 -0.5059 28 1 -0.4851 -0.8364 0.0772 29 1 2.6904 -0.7010 -2.7178 30 1 3.5442 0.4981 -1.7090 31 1 4.8117 -1.1211 -3.5852 32 1 5.6364 -0.4521 -2.1409 33 1 6.6216 -3.5871 -3.7048 34 1 6.8956 -1.8477 -3.4424 35 1 8.9384 -2.3125 -2.1772 36 1 9.0325 -3.1673 -3.7376 37 1 11.1543 -7.0966 -4.1174 38 1 11.1891 -3.5805 -6.4113 39 1 8.2167 -3.9438 -0.0616 40 1 7.9358 -5.6407 -0.5331 41 1 5.8042 -4.3148 -0.2443 42 1 5.9975 -4.9969 -1.8773 43 1 4.9496 -1.8685 0.2022 44 1 3.8410 -3.2347 -0.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046049804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:54 Heat of formation + Delta-G solvation = 54.023736 kcal Electronic energy + Delta-G solvation = -27339.531967 eV Core-core repulsion = 23488.677159 eV Total energy + Delta-G solvation = -3850.854808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.93684 -40.40599 -38.79436 -37.00653 -35.51898 -34.37131 -32.37899 -31.79797 -30.74859 -29.55570 -28.41367 -26.45548 -24.74966 -23.86815 -23.39109 -23.04724 -21.71136 -20.39169 -20.20526 -19.71682 -18.14068 -17.59564 -17.44087 -17.30317 -16.50642 -15.79690 -15.53940 -15.16395 -15.02825 -14.78798 -14.52519 -14.45148 -14.04554 -13.80723 -13.38914 -13.21465 -12.84634 -12.62048 -12.30132 -12.27211 -12.01415 -11.79383 -11.52036 -11.34368 -11.15995 -10.99132 -10.88873 -10.63007 -10.48755 -10.37855 -10.27392 -9.72340 -9.63291 -9.39088 -9.09538 -8.35157 -8.18578 -7.10467 -6.35354 -3.21642 0.37456 1.90464 1.99077 2.58086 2.69325 3.46089 3.53111 3.65091 3.70295 3.77215 4.09000 4.46608 4.59196 4.60871 4.68260 4.81691 4.89666 4.99931 5.02624 5.07155 5.12893 5.27870 5.28974 5.36281 5.49267 5.54922 5.58980 5.59311 5.69180 5.78528 5.83472 5.90587 6.06854 6.17334 6.20322 6.48262 6.57970 6.67059 6.82766 6.84910 7.01693 7.07176 7.19328 7.57049 7.90794 8.36756 8.99521 9.62441 10.35967 11.01233 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.002719 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.860436 B =10294.513377 C =10849.021818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.001 4.001 3 Si 1.042 2.958 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.351 4.351 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.132 3.868 11 C -0.123 4.123 12 C 0.069 3.931 13 H 0.050 0.950 14 N -0.527 5.527 15 C 0.041 3.959 16 C 0.096 3.904 17 N -0.599 5.599 18 C 0.605 3.395 19 O -0.520 6.520 20 C -0.105 4.105 21 C 0.053 3.947 22 N -0.494 5.494 23 C 0.193 3.807 24 O -0.185 6.185 25 C 0.119 3.881 26 C 0.041 3.959 27 C 0.141 3.859 28 H 0.267 0.733 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.197 0.803 38 H 0.256 0.744 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.248 -7.489 -10.763 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.206 4.206 3 Si 0.872 3.128 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.478 4.478 8 H 0.084 0.916 9 N -0.328 5.328 10 C 0.006 3.994 11 C -0.161 4.161 12 C -0.040 4.040 13 H 0.068 0.932 14 N -0.252 5.252 15 C -0.088 4.088 16 C -0.026 4.026 17 N -0.331 5.331 18 C 0.392 3.608 19 O -0.398 6.398 20 C -0.159 4.159 21 C -0.090 4.090 22 N -0.222 5.222 23 C -0.031 4.031 24 O -0.072 6.072 25 C -0.003 4.003 26 C -0.088 4.088 27 C 0.015 3.985 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.214 0.786 38 H 0.271 0.729 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.598 -6.290 -10.524 25.709 hybrid contribution -0.595 -1.655 -0.127 1.763 sum 22.003 -7.945 -10.651 25.704 Atomic orbital electron populations 1.70942 1.06651 1.30802 1.44636 1.26002 0.95934 1.00878 0.97766 0.84066 0.75978 0.76270 0.76480 1.20760 1.22410 1.22025 1.19669 1.00747 0.98297 1.29055 0.91572 1.44644 1.19407 1.42469 1.26319 1.21447 0.93123 0.95203 0.89610 1.22648 0.99017 0.95515 0.98915 1.22905 0.85987 0.95971 0.99104 0.93161 1.61966 1.14282 1.24268 1.24670 1.22456 0.92837 1.02262 0.91217 1.22463 0.97146 0.84693 0.98260 1.48109 1.41860 1.15855 1.27306 1.16515 0.78915 0.83486 0.81876 1.90896 1.64623 1.27938 1.56316 1.23244 1.08656 0.86852 0.97188 1.23619 0.94330 1.01109 0.89946 1.70489 1.24432 1.06899 1.20344 1.28602 0.89415 0.94874 0.90236 1.84655 1.55261 1.36901 1.30368 1.21881 0.89601 1.03249 0.85570 1.22495 0.95868 0.89372 1.01047 1.21615 0.90235 0.94221 0.92467 0.92264 0.94826 0.95543 0.91951 0.90701 0.94619 0.88817 0.89863 0.87461 0.78629 0.72879 0.89878 0.88403 0.88562 0.94438 0.95058 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.70 55.49 0.76 -26.60 16 2 C 0.00 -0.03 5.21 -17.43 -0.09 -0.12 16 3 Si 1.04 26.03 26.26 -169.99 -4.46 21.56 16 4 H -0.28 -6.73 6.59 56.52 0.37 -6.35 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.35 -9.98 10.18 -15.06 -0.15 -10.13 16 8 H 0.07 2.00 8.06 -52.48 -0.42 1.57 16 9 N -0.60 -14.70 3.08 -169.92 -0.52 -15.23 16 10 C 0.13 2.83 6.15 -3.06 -0.02 2.81 16 11 C -0.12 -1.97 5.03 -24.90 -0.13 -2.10 16 12 C 0.07 1.10 2.73 -65.45 -0.18 0.92 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 N -0.53 -6.79 4.53 -223.64 -1.01 -7.80 16 15 C 0.04 0.43 5.42 -3.71 -0.02 0.41 16 16 C 0.10 0.88 6.48 -3.60 -0.02 0.85 16 17 N -0.60 -6.40 3.01 -173.98 -0.52 -6.92 16 18 C 0.61 7.02 7.67 -12.84 -0.10 6.92 16 19 O -0.52 -7.32 16.37 5.20 0.09 -7.23 16 20 C -0.10 -1.02 6.89 -36.84 -0.25 -1.27 16 21 C 0.05 0.49 11.67 -17.42 -0.20 0.28 16 22 N -0.49 -4.31 11.26 -14.67 -0.17 -4.48 16 23 C 0.19 1.11 13.21 52.25 0.69 1.80 16 24 O -0.18 -1.39 7.28 4.41 0.03 -1.36 16 25 C 0.12 1.27 6.59 -3.60 -0.02 1.24 16 26 C 0.04 0.48 5.52 -3.70 -0.02 0.46 16 27 C 0.14 2.81 5.96 -2.41 -0.01 2.79 16 28 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.60 4.33 -51.93 -0.22 0.38 16 31 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 32 H 0.07 1.16 8.11 -51.93 -0.42 0.73 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.91 6.64 -51.93 -0.34 0.56 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.85 3.88 -54.63 -0.21 0.64 16 37 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.26 0.13 8.06 -52.49 -0.42 -0.30 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.05 7.09 -51.93 -0.37 0.69 16 41 H 0.10 1.16 7.05 -51.93 -0.37 0.80 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.04 0.74 7.87 -51.93 -0.41 0.34 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -34.32 347.82 -7.27 -41.59 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.17 Total: -3.65 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.53 Total: 4.87 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -1.46 Total: -61.02 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.12 Total: -8.60 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -4.46 Total: 21.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.32 -7.27 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046049804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.616 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds