Wall clock time and date at job start Tue Mar 31 2020 12:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00412 * 2 1 4 4 H 1.48504 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46904 * 60.00362 * 3 2 1 6 6 H 1.48498 * 109.47367 * 300.00353 * 3 2 1 7 7 C 1.38815 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99660 * 320.11260 * 7 2 1 9 9 N 1.36929 * 120.00364 * 140.11027 * 7 2 1 10 10 C 1.47026 * 125.64989 * 335.64265 * 9 7 2 11 11 C 1.54320 * 107.27540 * 181.02119 * 10 9 7 12 12 C 1.55154 * 102.94204 * 22.18792 * 11 10 9 13 13 H 1.09004 * 111.00459 * 82.60984 * 12 11 10 14 14 N 1.46903 * 111.00808 * 206.42490 * 12 11 10 15 15 C 1.46893 * 110.99866 * 304.30618 * 14 12 11 16 16 C 1.53238 * 109.34069 * 172.74210 * 15 14 12 17 17 N 1.47085 * 108.51944 * 53.83158 * 16 15 14 18 18 C 1.34773 * 120.88170 * 128.79329 * 17 16 15 19 19 O 1.21687 * 119.99812 * 175.74789 * 18 17 16 20 20 C 1.46721 * 120.00287 * 355.75632 * 18 17 16 21 21 C 1.36339 * 126.64281 * 186.74494 * 20 18 17 22 22 N 1.33702 * 107.45141 * 179.97438 * 21 20 18 23 23 C 1.30621 * 108.99304 * 359.97438 * 22 21 20 24 24 O 1.33665 * 109.15505 * 359.72996 * 23 22 21 25 25 C 1.47082 * 118.23458 * 308.81313 * 17 16 15 26 26 C 1.46892 * 111.00224 * 180.02562 * 14 12 11 27 27 C 1.47431 * 125.65141 * 155.32951 * 9 7 2 28 28 H 0.96996 * 120.00693 * 185.27342 * 1 2 3 29 29 H 1.09005 * 109.87915 * 300.43451 * 10 9 7 30 30 H 1.09006 * 109.88306 * 61.44320 * 10 9 7 31 31 H 1.08997 * 110.72366 * 140.55406 * 11 10 9 32 32 H 1.09004 * 110.71702 * 263.65111 * 11 10 9 33 33 H 1.08997 * 109.49625 * 292.70470 * 15 14 12 34 34 H 1.09003 * 109.49836 * 52.78222 * 15 14 12 35 35 H 1.08995 * 109.62879 * 294.11975 * 16 15 14 36 36 H 1.09008 * 109.78904 * 173.63013 * 16 15 14 37 37 H 1.07993 * 126.27651 * 359.95889 * 21 20 18 38 38 H 1.08000 * 125.41672 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.62922 * 291.47897 * 25 17 16 40 40 H 1.08999 * 109.62475 * 170.89865 * 25 17 16 41 41 H 1.09002 * 109.49504 * 307.21502 * 26 14 12 42 42 H 1.09001 * 109.49446 * 67.26724 * 26 14 12 43 43 H 1.09007 * 110.36355 * 274.75226 * 27 9 7 44 44 H 1.08997 * 110.36445 * 37.07017 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 1.2126 6 1 1.8915 2.3964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 1.6585 -2.0290 0.5989 9 7 3.1405 -1.3400 -0.7611 10 6 3.4646 -0.5588 -1.9637 11 6 4.8171 -1.0771 -2.4961 12 6 4.9062 -2.5024 -1.8896 13 1 4.3485 -3.2192 -2.4925 14 7 6.3053 -2.9232 -1.7366 15 6 7.0220 -2.8430 -3.0163 16 6 8.5120 -3.1131 -2.7814 17 7 8.6483 -4.3941 -2.0715 18 6 9.4790 -5.3525 -2.5272 19 8 9.6381 -6.3748 -1.8864 20 6 10.1917 -5.1634 -3.7956 21 6 10.9579 -6.0862 -4.4439 22 7 11.4218 -5.5107 -5.5580 23 6 10.9760 -4.2845 -5.6204 24 8 10.2099 -4.0414 -4.5524 25 6 7.8535 -4.6015 -0.8514 26 6 6.3895 -4.2729 -1.1629 27 6 4.2371 -2.2918 -0.5059 28 1 -0.4851 -0.8364 0.0772 29 1 2.6904 -0.7010 -2.7178 30 1 3.5442 0.4981 -1.7090 31 1 4.8117 -1.1211 -3.5852 32 1 5.6364 -0.4521 -2.1409 33 1 6.6216 -3.5871 -3.7048 34 1 6.8956 -1.8477 -3.4424 35 1 8.9384 -2.3125 -2.1772 36 1 9.0325 -3.1673 -3.7376 37 1 11.1543 -7.0966 -4.1174 38 1 11.1891 -3.5805 -6.4113 39 1 8.2167 -3.9438 -0.0616 40 1 7.9358 -5.6407 -0.5331 41 1 5.8042 -4.3148 -0.2443 42 1 5.9975 -4.9969 -1.8773 43 1 4.9496 -1.8685 0.2022 44 1 3.8410 -3.2347 -0.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046049804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:53 Heat of formation + Delta-G solvation = 26.231073 kcal Electronic energy + Delta-G solvation = -27340.737147 eV Core-core repulsion = 23488.677159 eV Total energy + Delta-G solvation = -3852.059988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.51638 -41.30072 -39.98170 -38.27849 -36.25074 -35.53127 -34.24846 -32.71064 -31.47862 -31.15558 -29.73768 -27.69553 -25.86317 -24.89187 -24.63701 -23.71084 -22.54309 -22.01353 -21.43068 -20.77070 -19.54937 -18.85300 -18.28603 -17.91898 -17.38072 -17.04659 -16.89841 -16.26032 -15.96293 -15.78647 -15.56883 -15.30168 -15.24373 -15.10006 -14.72331 -14.51130 -14.35959 -13.94697 -13.63083 -13.41611 -13.04482 -12.72350 -12.71177 -12.56976 -12.48658 -12.34055 -12.10262 -11.91615 -11.77632 -11.66805 -11.51047 -11.43810 -11.28503 -10.38387 -10.32835 -9.92450 -9.36983 -9.19729 -8.58767 -5.43430 -0.26389 1.26678 1.40187 1.44628 1.53707 1.75280 1.84357 1.92762 2.51492 2.68016 2.96738 3.19807 3.43055 3.52401 3.63715 3.82154 3.85031 3.89668 4.01344 4.13621 4.14618 4.19734 4.32694 4.38186 4.42852 4.49514 4.54225 4.62409 4.76973 4.82384 4.84736 4.85258 4.94841 4.98595 5.04332 5.14923 5.21752 5.28509 5.36044 5.72591 5.92126 6.01060 6.10703 6.16826 6.48435 6.74943 6.82483 7.53283 8.24038 8.73413 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.002719 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.860436 B =10294.513377 C =10849.021818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.053 4.053 3 Si 1.091 2.909 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.348 4.348 8 H 0.030 0.970 9 N -0.622 5.622 10 C 0.121 3.879 11 C -0.106 4.106 12 C 0.087 3.913 13 H 0.044 0.956 14 N -0.527 5.527 15 C 0.041 3.959 16 C 0.101 3.899 17 N -0.601 5.601 18 C 0.604 3.396 19 O -0.556 6.556 20 C -0.125 4.125 21 C 0.053 3.947 22 N -0.528 5.528 23 C 0.224 3.776 24 O -0.184 6.184 25 C 0.124 3.876 26 C 0.045 3.955 27 C 0.139 3.861 28 H 0.252 0.748 29 H 0.019 0.981 30 H 0.022 0.978 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.198 0.802 38 H 0.307 0.693 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.335 -5.928 -13.105 29.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.252 4.252 3 Si 0.916 3.084 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.476 4.476 8 H 0.047 0.953 9 N -0.350 5.350 10 C -0.004 4.004 11 C -0.144 4.144 12 C -0.022 4.022 13 H 0.062 0.938 14 N -0.252 5.252 15 C -0.087 4.087 16 C -0.020 4.020 17 N -0.332 5.332 18 C 0.393 3.607 19 O -0.437 6.437 20 C -0.180 4.180 21 C -0.089 4.089 22 N -0.255 5.255 23 C 0.000 4.000 24 O -0.071 6.071 25 C 0.002 3.998 26 C -0.084 4.084 27 C 0.014 3.986 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.215 0.785 38 H 0.321 0.679 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 25.721 -4.742 -12.887 29.156 hybrid contribution -1.522 -2.246 0.543 2.767 sum 24.198 -6.988 -12.343 28.049 Atomic orbital electron populations 1.71063 1.07703 1.29976 1.47806 1.27175 0.95904 1.04331 0.97801 0.83405 0.75641 0.72460 0.76880 1.18735 1.22159 1.20807 1.19530 1.02259 0.97194 1.28634 0.95254 1.44744 1.19622 1.43611 1.27028 1.21644 0.95857 0.94800 0.88124 1.22598 0.96033 0.94881 1.00885 1.22560 0.87482 0.96268 0.95894 0.93805 1.61925 1.12209 1.24696 1.26362 1.22572 0.93134 1.03240 0.89728 1.22560 0.96337 0.83967 0.99166 1.48195 1.41455 1.16335 1.27210 1.16712 0.78778 0.83006 0.82252 1.90868 1.65916 1.29283 1.57584 1.22795 1.09989 0.87893 0.97335 1.23770 0.93718 1.01348 0.90082 1.70535 1.25969 1.08503 1.20514 1.29780 0.86214 0.94483 0.89488 1.84599 1.55791 1.36015 1.30708 1.21772 0.88817 1.03162 0.86006 1.22453 0.96582 0.88863 1.00520 1.21684 0.89186 0.92492 0.95248 0.93795 0.96269 0.96013 0.88414 0.89038 0.94795 0.87049 0.89018 0.85792 0.78486 0.67865 0.89252 0.88870 0.89353 0.94970 0.95040 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.70 21.65 0.30 -58.17 16 2 C -0.05 -3.15 5.21 84.86 0.44 -2.71 16 3 Si 1.09 52.49 26.26 68.60 1.80 54.29 16 4 H -0.26 -11.67 6.59 99.48 0.66 -11.02 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.35 -20.37 10.18 84.04 0.86 -19.52 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 9 N -0.62 -30.44 3.08 -691.51 -2.13 -32.57 16 10 C 0.12 4.98 6.15 86.73 0.53 5.52 16 11 C -0.11 -3.02 5.03 31.78 0.16 -2.86 16 12 C 0.09 2.58 2.73 46.38 0.13 2.71 16 13 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 14 N -0.53 -12.20 4.53 -861.47 -3.90 -16.10 16 15 C 0.04 0.71 5.42 86.38 0.47 1.18 16 16 C 0.10 1.49 6.48 86.35 0.56 2.05 16 17 N -0.60 -11.73 3.01 -822.56 -2.48 -14.20 16 18 C 0.60 13.39 7.67 86.46 0.66 14.05 16 19 O -0.56 -15.70 16.37 -4.31 -0.07 -15.77 16 20 C -0.13 -2.21 6.89 24.04 0.17 -2.04 16 21 C 0.05 0.91 11.67 83.97 0.98 1.89 16 22 N -0.53 -7.87 11.26 -315.09 -3.55 -11.42 16 23 C 0.22 1.65 13.21 130.42 1.72 3.37 16 24 O -0.18 -2.12 7.28 -7.13 -0.05 -2.17 16 25 C 0.12 2.52 6.59 86.35 0.57 3.09 16 26 C 0.04 1.00 5.52 86.39 0.48 1.48 16 27 C 0.14 5.49 5.96 86.93 0.52 6.01 16 28 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 29 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.02 0.93 4.33 -2.38 -0.01 0.92 16 31 H 0.10 2.15 7.96 -2.39 -0.02 2.13 16 32 H 0.09 2.37 8.11 -2.39 -0.02 2.35 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 1.56 6.64 -2.39 -0.02 1.55 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.13 1.46 3.88 -45.18 -0.18 1.28 16 37 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.31 -1.51 8.06 -2.91 -0.02 -1.53 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 2.00 7.09 -2.39 -0.02 1.98 16 41 H 0.09 2.12 7.05 -2.39 -0.02 2.10 16 42 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.03 1.05 7.87 -2.39 -0.02 1.03 16 Total: -1.00 -77.64 347.82 -1.07 -78.71 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 0.76 Total: 3.19 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 8.24 Total: 14.22 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -11.75 Total: -132.47 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.12 Total: -17.94 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 1.80 Total: 54.29 kcal Total: -77.64 -1.07 -78.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046049804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.943 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds