Wall clock time and date at job start Tue Mar 31 2020 12:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48497 * 109.47437 * 264.99945 * 3 2 1 5 5 H 1.48509 * 109.46959 * 145.00066 * 3 2 1 6 6 H 1.48503 * 109.47198 * 25.00490 * 3 2 1 7 7 C 1.38811 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00524 * 184.86529 * 7 2 1 9 9 N 1.36937 * 119.99938 * 4.86700 * 7 2 1 10 10 C 1.47426 * 125.64814 * 4.13839 * 9 7 2 11 11 C 1.54910 * 104.83111 * 204.09213 * 10 9 7 12 12 C 1.55159 * 101.58305 * 322.99086 * 11 10 9 13 13 H 1.09005 * 110.71760 * 276.96284 * 12 11 10 14 14 N 1.46897 * 110.72113 * 153.86839 * 12 11 10 15 15 C 1.46904 * 111.00091 * 179.53168 * 14 12 11 16 16 C 1.53231 * 109.33952 * 172.74365 * 15 14 12 17 17 N 1.47083 * 108.52387 * 53.82856 * 16 15 14 18 18 C 1.34772 * 120.88052 * 128.83491 * 17 16 15 19 19 O 1.21690 * 119.99967 * 186.31330 * 18 17 16 20 20 C 1.46728 * 120.00271 * 6.31262 * 18 17 16 21 21 C 1.36337 * 126.64560 * 187.16819 * 20 18 17 22 22 N 1.33688 * 107.45441 * 179.97438 * 21 20 18 23 23 C 1.30613 * 108.99367 * 359.97438 * 22 21 20 24 24 O 1.33661 * 109.15828 * 359.75321 * 23 22 21 25 25 C 1.47070 * 118.23672 * 308.81515 * 17 16 15 26 26 C 1.46899 * 111.00337 * 55.22690 * 14 12 11 27 27 C 1.47023 * 125.64791 * 183.82973 * 9 7 2 28 28 H 0.96993 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.09002 * 110.36437 * 322.92757 * 10 9 7 30 30 H 1.08995 * 110.36928 * 85.25450 * 10 9 7 31 31 H 1.09002 * 111.00659 * 81.06609 * 11 10 9 32 32 H 1.08994 * 111.00504 * 204.87827 * 11 10 9 33 33 H 1.09000 * 109.49118 * 292.70340 * 15 14 12 34 34 H 1.08998 * 109.49076 * 52.78244 * 15 14 12 35 35 H 1.08998 * 109.63239 * 294.11934 * 16 15 14 36 36 H 1.09002 * 109.62683 * 173.54007 * 16 15 14 37 37 H 1.08003 * 126.27219 * 359.97438 * 21 20 18 38 38 H 1.08009 * 125.42227 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.63112 * 291.47216 * 25 17 16 40 40 H 1.08999 * 109.63287 * 170.89169 * 25 17 16 41 41 H 1.09003 * 109.49164 * 307.21556 * 26 14 12 42 42 H 1.08995 * 109.49302 * 67.26818 * 26 14 12 43 43 H 1.08997 * 109.88276 * 298.39382 * 27 9 7 44 44 H 1.09001 * 109.88472 * 59.55672 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9855 -1.3947 5 1 3.4909 1.4729 0.8031 6 1 1.3988 2.6809 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0873 -1.2039 0.0788 9 7 1.3293 -2.3859 -0.1017 10 6 -0.1246 -2.5264 -0.3017 11 6 -0.4682 -3.9290 0.2589 12 6 0.7785 -4.7487 -0.1668 13 1 0.6826 -5.0890 -1.1979 14 7 0.9852 -5.8878 0.7374 15 6 2.1580 -6.6747 0.3333 16 6 2.4460 -7.7392 1.3972 17 7 1.2198 -8.5203 1.6206 18 6 1.2396 -9.8671 1.5747 19 8 0.1990 -10.4937 1.6471 20 6 2.5159 -10.5778 1.4374 21 6 2.6849 -11.9164 1.2414 22 7 3.9996 -12.1485 1.1709 23 6 4.6390 -11.0186 1.3135 24 8 3.7533 -10.0306 1.4740 25 6 -0.0283 -7.7926 1.8957 26 6 -0.2189 -6.7259 0.8122 27 6 1.9278 -3.7271 -0.0352 28 1 -0.4849 0.8400 0.0004 29 1 -0.6599 -1.7550 0.2519 30 1 -0.3686 -2.4716 -1.3626 31 1 -0.5666 -3.9027 1.3441 32 1 -1.3727 -4.3238 -0.2038 33 1 1.9587 -7.1600 -0.6222 34 1 3.0211 -6.0165 0.2343 35 1 2.7466 -7.2560 2.3268 36 1 3.2417 -8.3982 1.0498 37 1 1.9004 -12.6541 1.1583 38 1 5.7126 -10.9008 1.3001 39 1 0.0345 -7.3144 2.8733 40 1 -0.8684 -8.4867 1.8779 41 1 -1.0795 -6.1048 1.0606 42 1 -0.3854 -7.2101 -0.1501 43 1 2.6375 -3.8572 -0.8521 44 1 2.4324 -3.8608 0.9217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046049805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:58 Heat of formation + Delta-G solvation = 52.689337 kcal Electronic energy + Delta-G solvation = -27277.292943 eV Core-core repulsion = 23426.380271 eV Total energy + Delta-G solvation = -3850.912672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.87426 -40.33425 -38.65882 -36.80347 -35.42653 -34.29241 -32.09015 -31.72523 -30.68270 -29.25361 -28.05145 -26.28848 -24.44172 -24.29305 -23.54219 -22.97432 -21.63151 -20.24566 -19.97697 -19.50936 -18.04408 -17.51819 -17.24236 -16.93747 -16.41409 -15.62613 -15.39784 -14.93385 -14.79114 -14.61075 -14.57896 -14.32634 -14.11405 -13.80034 -13.27716 -13.07416 -12.55409 -12.44668 -11.97525 -11.86856 -11.68839 -11.57759 -11.44709 -11.35207 -11.08338 -10.96320 -10.83082 -10.56822 -10.30323 -10.16982 -10.09377 -9.82863 -9.58108 -9.52021 -9.00779 -8.71373 -8.20982 -6.83679 -5.62085 -3.09855 0.42955 1.98404 2.04373 2.64507 2.75638 3.39314 3.43832 3.45862 3.70693 3.89642 4.15822 4.48781 4.52158 4.70955 4.80116 4.92896 5.03418 5.07128 5.13449 5.21041 5.40428 5.43092 5.44568 5.52498 5.60167 5.64755 5.73594 5.80147 5.82171 5.84396 5.95333 6.13686 6.29431 6.52154 6.53198 6.62926 6.66215 6.89913 7.12728 7.13840 7.34827 7.46616 7.62740 7.62860 7.85309 8.40679 9.21658 9.82813 10.46512 11.36670 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002639 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.736004 B =10608.090591 C =11439.708140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.133 4.133 12 C 0.071 3.929 13 H 0.042 0.958 14 N -0.526 5.526 15 C 0.041 3.959 16 C 0.103 3.897 17 N -0.599 5.599 18 C 0.606 3.394 19 O -0.521 6.521 20 C -0.104 4.104 21 C 0.051 3.949 22 N -0.495 5.495 23 C 0.195 3.805 24 O -0.185 6.185 25 C 0.118 3.882 26 C 0.041 3.959 27 C 0.147 3.853 28 H 0.252 0.748 29 H 0.123 0.877 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.197 0.803 38 H 0.256 0.744 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.015 0.985 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -20.616 2.918 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.013 3.987 11 C -0.172 4.172 12 C -0.037 4.037 13 H 0.060 0.940 14 N -0.251 5.251 15 C -0.088 4.088 16 C -0.020 4.020 17 N -0.331 5.331 18 C 0.393 3.607 19 O -0.399 6.399 20 C -0.159 4.159 21 C -0.091 4.091 22 N -0.223 5.223 23 C -0.030 4.030 24 O -0.071 6.071 25 C -0.004 4.004 26 C -0.088 4.088 27 C 0.021 3.979 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.023 0.977 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.213 0.787 38 H 0.272 0.728 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.079 -21.015 3.355 21.879 hybrid contribution 0.284 1.101 -0.906 1.454 sum 5.363 -19.913 2.449 20.768 Atomic orbital electron populations 1.69617 1.04940 1.24663 1.57832 1.24780 0.95683 0.97757 1.02587 0.86063 0.78485 0.83171 0.77609 1.21657 1.20732 1.21653 1.19061 0.90692 0.82535 1.42491 0.90528 1.44431 1.03605 0.99631 1.85067 1.22194 0.85686 0.93280 0.97504 1.23087 0.94494 0.98305 1.01323 1.22722 0.98614 0.89717 0.92642 0.93982 1.62005 1.02922 1.08702 1.51450 1.22462 0.95604 0.95047 0.95664 1.22308 0.85853 0.93407 1.00387 1.48105 1.11547 1.04639 1.68834 1.16496 0.85153 0.81746 0.77346 1.90888 1.30770 1.66673 1.51594 1.23221 0.84012 0.94436 1.14255 1.23611 0.93565 0.93890 0.98066 1.70474 1.05040 1.27823 1.18928 1.28558 0.98060 0.80101 0.96286 1.84693 1.15575 1.38441 1.68411 1.21887 0.85770 0.93518 0.99214 1.22476 0.94413 0.94412 0.97463 1.21210 0.93095 0.85573 0.98033 0.93679 0.86016 0.97708 0.91021 0.92800 0.94711 0.88776 0.89816 0.88146 0.78656 0.72847 0.89932 0.88439 0.88562 0.94625 0.96676 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.04 55.49 0.56 -26.03 16 2 C -0.01 -0.36 5.47 -17.43 -0.10 -0.45 16 3 Si 0.92 21.87 29.56 -169.99 -5.02 16.85 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.29 3.39 -170.06 -0.58 -15.87 16 10 C 0.14 3.33 6.14 -2.53 -0.02 3.31 16 11 C -0.13 -2.47 5.12 -24.58 -0.13 -2.60 16 12 C 0.07 1.22 2.64 -65.87 -0.17 1.04 16 13 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 14 N -0.53 -7.40 4.45 -224.14 -1.00 -8.40 16 15 C 0.04 0.49 5.51 -3.70 -0.02 0.47 16 16 C 0.10 1.05 6.26 -3.60 -0.02 1.03 16 17 N -0.60 -6.82 3.01 -173.99 -0.52 -7.35 16 18 C 0.61 7.35 7.66 -12.83 -0.10 7.26 16 19 O -0.52 -7.55 16.36 5.20 0.09 -7.46 16 20 C -0.10 -1.07 6.80 -36.84 -0.25 -1.32 16 21 C 0.05 0.50 11.67 -17.43 -0.20 0.30 16 22 N -0.49 -4.56 11.26 -14.67 -0.17 -4.72 16 23 C 0.19 1.24 13.21 52.24 0.69 1.93 16 24 O -0.18 -1.53 7.46 4.43 0.03 -1.50 16 25 C 0.12 1.32 6.61 -3.61 -0.02 1.30 16 26 C 0.04 0.51 5.42 -3.70 -0.02 0.49 16 27 C 0.15 3.02 5.85 -3.06 -0.02 3.00 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.12 3.30 5.49 -51.93 -0.29 3.02 16 30 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 1.36 8.10 -51.93 -0.42 0.93 16 32 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.12 7.16 -51.93 -0.37 0.75 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.90 4.36 -52.43 -0.23 0.67 16 37 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16 38 H 0.26 0.28 8.06 -52.48 -0.42 -0.14 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.08 7.04 -51.93 -0.37 0.72 16 41 H 0.10 1.17 6.60 -51.93 -0.34 0.82 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.04 0.73 7.99 -51.93 -0.41 0.32 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -32.91 349.43 -8.07 -40.99 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.19 Total: -1.29 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.53 Total: 9.52 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -1.71 Total: -62.36 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.12 Total: -8.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.91 -8.07 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046049805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.677 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds